Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:16:51 (2038182): wrapper (7.7.26015): starting
19:16:51 (2038182): wrapper: running run_atlas (--nthreads 3)
[2026-01-26 19:16:51] Arguments: --nthreads 3
[2026-01-26 19:16:51] Threads: 3
[2026-01-26 19:16:51] Checking for CVMFS
[2026-01-26 19:16:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 19:16:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 19:16:51] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 19:16:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 19:16:51] 2.9.2.0 941362 4679 80516 155555 0 50 23290544 36864001 0 130560 0 2269962 99.986 177400 5363 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 19:16:51] CVMFS is ok
[2026-01-26 19:16:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 19:16:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 19:16:51] Further information can be found at the LHC@home message board.
[2026-01-26 19:16:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 19:16:51] Checking for apptainer binary...
[2026-01-26 19:16:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 19:16:51] Running /usr/bin/apptainer --version
[2026-01-26 19:16:51] apptainer version 1.4.1-1.1
[2026-01-26 19:16:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 19:16:51] atlasA230
[2026-01-26 19:16:51] apptainer works
[2026-01-26 19:16:51] Set ATHENA_PROC_NUMBER=3
[2026-01-26 19:16:51] Set ATHENA_CORE_NUMBER=3
[2026-01-26 19:16:52] Starting ATLAS job with PandaID=6983772141
[2026-01-26 19:16:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 20:39:29]  *** The last 200 lines of the pilot log: ***
[2026-01-26 20:39:29] 2026-01-26 19:38:57,966 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 20:39:29] 2026-01-26 19:38:57,966 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 20:39:29] 2026-01-26 19:38:57,966 | INFO     | job 6983772141 has completed (purged errors)
[2026-01-26 20:39:29] 2026-01-26 19:38:57,966 | INFO     | overall cleanup function is called
[2026-01-26 20:39:29] 2026-01-26 19:38:58,973 | INFO     | --- collectZombieJob: --- 10, [2046652]
[2026-01-26 20:39:29] 2026-01-26 19:38:58,973 | INFO     | zombie collector waiting for pid 2046652
[2026-01-26 20:39:29] 2026-01-26 19:38:58,973 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 20:39:29] 2026-01-26 19:38:58,973 | INFO     | collected zombie processes
[2026-01-26 20:39:29] 2026-01-26 19:38:58,973 | INFO     | will attempt to kill all subprocesses of pid=2046652
[2026-01-26 20:39:29] 2026-01-26 19:38:59,031 | INFO     | process IDs to be killed: [2046652] (in reverse order)
[2026-01-26 20:39:29] 2026-01-26 19:38:59,061 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 20:39:29] 2026-01-26 19:38:59,061 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 20:39:29] 2026-01-26 19:38:59,063 | INFO     | did not find any defunct processes belonging to 2046652
[2026-01-26 20:39:29] 2026-01-26 19:38:59,065 | INFO     | did not find any defunct processes belonging to 2046652
[2026-01-26 20:39:29] 2026-01-26 19:38:59,065 | INFO     | ready for new job
[2026-01-26 20:39:29] 2026-01-26 19:38:59,065 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 20:39:29] 2026-01-26 19:38:59,065 | INFO     | **************************************
[2026-01-26 20:39:29] 2026-01-26 19:38:59,066 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 20:39:29] 2026-01-26 19:38:59,066 | INFO     | **************************************
[2026-01-26 20:39:29] 2026-01-26 19:38:59,066 | INFO     | 
[2026-01-26 20:39:29] 2026-01-26 19:38:59,066 | INFO     | architecture information:
[2026-01-26 20:39:29] 2026-01-26 19:38:59,066 | INFO     | executing command: cat /etc/os-release
[2026-01-26 20:39:29] 2026-01-26 19:38:59,075 | INFO     | cat /etc/os-release:
[2026-01-26 20:39:29] NAME="CentOS Linux"
[2026-01-26 20:39:29] VERSION="7 (Core)"
[2026-01-26 20:39:29] ID="centos"
[2026-01-26 20:39:29] ID_LIKE="rhel fedora"
[2026-01-26 20:39:29] VERSION_ID="7"
[2026-01-26 20:39:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 20:39:29] ANSI_COLOR="0;31"
[2026-01-26 20:39:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 20:39:29] HOME_URL="https://www.centos.org/"
[2026-01-26 20:39:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 20:39:29] 
[2026-01-26 20:39:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 20:39:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 20:39:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 20:39:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 20:39:29] 
[2026-01-26 20:39:29] 2026-01-26 19:38:59,075 | INFO     | **************************************
[2026-01-26 20:39:29] 2026-01-26 19:38:59,579 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 20:39:29] 2026-01-26 19:38:59,592 | INFO     | sufficient remaining disk space (334477918208 B)
[2026-01-26 20:39:29] 2026-01-26 19:38:59,593 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 20:39:29] 2026-01-26 19:38:59,593 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 20:39:29] 2026-01-26 19:38:59,593 | INFO     | update_server=False
[2026-01-26 20:39:29] 2026-01-26 19:38:59,593 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 20:39:29] 2026-01-26 19:38:59,593 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 20:39:29] 2026-01-26 19:38:59,593 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 20:39:29] 2026-01-26 19:38:59,660 | INFO     | all data control threads have been joined
[2026-01-26 20:39:29] 2026-01-26 19:38:59,725 | INFO     | all job control threads have been joined
[2026-01-26 20:39:29] 2026-01-26 19:38:59,756 | INFO     | all payload control threads have been joined
[2026-01-26 20:39:29] 2026-01-26 19:39:00,206 | WARNING  | process 2046652 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 20:39:29] 2026-01-26 19:39:00,246 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 20:39:29] 2026-01-26 19:39:00,297 | INFO     | number of running child processes to parent process 2046652: 1
[2026-01-26 20:39:29] 2026-01-26 19:39:00,297 | INFO     | maximum number of monitored processes: 6
[2026-01-26 20:39:29] 2026-01-26 19:39:00,297 | INFO     | aborting job monitoring since job object (job id=6983772141) has expired
[2026-01-26 20:39:29] 2026-01-26 19:39:00,297 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 20:39:29] 2026-01-26 19:39:00,297 | INFO     | will abort loop
[2026-01-26 20:39:29] 2026-01-26 19:39:00,597 | INFO     | [job] retrieve thread has finished
[2026-01-26 20:39:29] 2026-01-26 19:39:00,598 | INFO     | [job] queue monitor thread has finished
[2026-01-26 20:39:29] 2026-01-26 19:39:00,665 | INFO     | [data] control thread has finished
[2026-01-26 20:39:29] 2026-01-26 19:39:00,715 | INFO     | [data] copytool_in thread has finished
[2026-01-26 20:39:29] 2026-01-26 19:39:00,731 | INFO     | [job] control thread has finished
[2026-01-26 20:39:29] 2026-01-26 19:39:00,762 | INFO     | [payload] control thread has finished
[2026-01-26 20:39:29] 2026-01-26 19:39:01,086 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 20:39:29] 2026-01-26 19:39:01,303 | INFO     | [job] job monitor thread has finished
[2026-01-26 20:39:29] 2026-01-26 19:39:01,419 | INFO     | [payload] validate_post thread has finished
[2026-01-26 20:39:29] 2026-01-26 19:39:01,599 | INFO     | [data] copytool_out thread has finished
[2026-01-26 20:39:29] 2026-01-26 19:39:01,709 | INFO     | [payload] failed_post thread has finished
[2026-01-26 20:39:29] 2026-01-26 19:39:01,965 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 20:39:29] 2026-01-26 19:39:01,969 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 20:39:29] 2026-01-26 19:39:01,975 | INFO     | [job] validate thread has finished
[2026-01-26 20:39:29] 2026-01-26 19:39:02,129 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 20:39:29] 2026-01-26 19:39:06,137 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 20:39:29] 2026-01-26 19:39:07,101 | INFO     | [monitor] cgroup control has ended
[2026-01-26 20:39:29] 2026-01-26 19:39:10,063 | INFO     | job.realtimelogging is not enabled
[2026-01-26 20:39:29] 2026-01-26 19:39:11,068 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 20:39:29] 2026-01-26 19:39:12,720 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139900422162240)>', '<ExcThread(monitor, started 139900078769920)>']
[2026-01-26 20:39:29] 2026-01-26 19:39:17,746 | INFO     | all workflow threads have been joined
[2026-01-26 20:39:29] 2026-01-26 19:39:17,747 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 20:39:29] 2026-01-26 19:39:17,747 | INFO     | traces error code: 0
[2026-01-26 20:39:29] 2026-01-26 19:39:17,747 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 20:39:29] 2026-01-26 19:39:29,479 | INFO     | PID=2042225 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 20:39:29] 2026-01-26 19:39:29,479 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 20:39:29] 2026-01-26 19:39:29,479 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 20:39:29] 2026-01-26 19:39:29,479 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 20:39:29] 2026-01-26 19:39:29,479 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 20:39:29] 2026-01-26 19:39:29,479 | INFO     | [monitor] control thread has ended
[2026-01-26 20:39:29] 2026-01-26 19:39:29,529 [wrapper] ==== pilot stdout END ====
[2026-01-26 20:39:29] 2026-01-26 19:39:29,531 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 20:39:29] 2026-01-26 19:39:29,533 [wrapper] pilotpid: 2042225
[2026-01-26 20:39:29] 2026-01-26 19:39:29,536 [wrapper] Pilot exit status: 0
[2026-01-26 20:39:29] 2026-01-26 19:39:29,543 [wrapper] pandaids: 6983772141
[2026-01-26 20:39:29] 2026-01-26 19:39:29,561 [wrapper] cleanup supervisor_pilot 2055962 2042226
[2026-01-26 20:39:29] 2026-01-26 19:39:29,564 [wrapper] Test setup, not cleaning
[2026-01-26 20:39:29] 2026-01-26 19:39:29,566 [wrapper] apfmon messages muted
[2026-01-26 20:39:29] 2026-01-26 19:39:29,568 [wrapper] ==== wrapper stdout END ====
[2026-01-26 20:39:29] 2026-01-26 19:39:29,571 [wrapper] ==== wrapper stderr END ====
[2026-01-26 20:39:29]  *** Error codes and diagnostics ***
[2026-01-26 20:39:29]     "exeErrorCode": 0,
[2026-01-26 20:39:29]     "exeErrorDiag": "",
[2026-01-26 20:39:29]     "pilotErrorCode": 0,
[2026-01-26 20:39:29]     "pilotErrorDiag": "",
[2026-01-26 20:39:29]  *** Listing of results directory ***
[2026-01-26 20:39:29] total 675592
[2026-01-26 20:39:29] -rw-r--r-- 1 boinc boinc    584422 Jan 26 04:19 pilot3.tar.gz
[2026-01-26 20:39:29] -rwx------ 1 boinc boinc     36322 Jan 26 04:19 runpilot2-wrapper.sh
[2026-01-26 20:39:29] -rw-r--r-- 1 boinc boinc      5111 Jan 26 04:21 queuedata.json
[2026-01-26 20:39:29] -rw-r--r-- 1 boinc boinc       100 Jan 26 19:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 20:39:29] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 19:16 run_atlas
[2026-01-26 20:39:29] -rw-r--r-- 1 boinc boinc       105 Jan 26 19:16 job.xml
[2026-01-26 20:39:29] -rw-r--r-- 2 boinc boinc 502972251 Jan 26 19:16 EVNT.48318032._000061.pool.root.1
[2026-01-26 20:39:29] -rw-r--r-- 2 boinc boinc    597762 Jan 26 19:16 input.tar.gz
[2026-01-26 20:39:29] -rw-r--r-- 2 boinc boinc     15845 Jan 26 19:16 start_atlas.sh
[2026-01-26 20:39:29] drwxrwx--x 2 boinc boinc      4096 Jan 26 19:16 shared
[2026-01-26 20:39:29] -rw-r--r-- 1 boinc boinc         0 Jan 26 19:16 boinc_setup_complete
[2026-01-26 20:39:29] -rw-r--r-- 1 boinc boinc      6441 Jan 26 19:16 init_data.xml
[2026-01-26 20:39:29] -rw-r--r-- 1 boinc boinc         0 Jan 26 19:16 boinc_lockfile
[2026-01-26 20:39:29] -rw-r--r-- 1 boinc boinc      2533 Jan 26 19:16 pandaJob.out
[2026-01-26 20:39:29] -rw------- 1 boinc boinc   1006384 Jan 26 19:16 agis_schedconf.cvmfs.json
[2026-01-26 20:39:29] -rw------- 1 boinc boinc   1516246 Jan 26 19:16 agis_ddmendpoints.agis.ALL.json
[2026-01-26 20:39:29] -rw------- 1 boinc boinc       430 Jan 26 19:17 workernode_map.json
[2026-01-26 20:39:29] drwx------ 5 boinc boinc      4096 Jan 26 19:17 pilot3
[2026-01-26 20:39:29] -rw------- 1 boinc boinc 182915833 Jan 26 20:38 HITS.48318034._002386.pool.root.1
[2026-01-26 20:39:29] -rw-r--r-- 1 boinc boinc       530 Jan 26 20:38 boinc_task_state.xml
[2026-01-26 20:39:29] -rw------- 1 boinc boinc      1019 Jan 26 20:38 memory_monitor_summary.json
[2026-01-26 20:39:29] -rw------- 1 boinc boinc    277539 Jan 26 20:38 log.48318034._002386.job.log.tgz.1
[2026-01-26 20:39:29] -rw------- 1 boinc boinc      6325 Jan 26 20:38 heartbeat.json
[2026-01-26 20:39:29] -rw-r--r-- 1 boinc boinc        27 Jan 26 20:39 wrapper_checkpoint.txt
[2026-01-26 20:39:29] -rw-r--r-- 1 boinc boinc      8192 Jan 26 20:39 boinc_mmap_file
[2026-01-26 20:39:29] -rw------- 1 boinc boinc       747 Jan 26 20:39 pilotlog.txt
[2026-01-26 20:39:29] -rw------- 1 boinc boinc        95 Jan 26 20:39 pilot_heartbeat.json
[2026-01-26 20:39:29] -rw------- 1 boinc boinc    720294 Jan 26 20:39 log.48318034._002386.job.log.1
[2026-01-26 20:39:29] -rw------- 1 boinc boinc       357 Jan 26 20:39 output.list
[2026-01-26 20:39:29] -rw-r--r-- 1 boinc boinc       620 Jan 26 20:39 runtime_log
[2026-01-26 20:39:29] -rw------- 1 boinc boinc   1013760 Jan 26 20:39 result.tar.gz
[2026-01-26 20:39:29] -rw-r--r-- 1 boinc boinc      8911 Jan 26 20:39 runtime_log.err
[2026-01-26 20:39:29] -rw------- 1 boinc boinc       660 Jan 26 20:39 GFVLDmrJS48n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6P2KDmTGnBNo.diag
[2026-01-26 20:39:29] -rw-r--r-- 1 boinc boinc     11742 Jan 26 20:39 stderr.txt
[2026-01-26 20:39:29] HITS file was successfully produced:
[2026-01-26 20:39:29] -rw------- 1 boinc boinc 182915833 Jan 26 20:38 shared/HITS.pool.root.1
[2026-01-26 20:39:29]  *** Contents of shared directory: ***
[2026-01-26 20:39:29] total 671416
[2026-01-26 20:39:29] -rw-r--r-- 2 boinc boinc 502972251 Jan 26 19:16 ATLAS.root_0
[2026-01-26 20:39:29] -rw-r--r-- 2 boinc boinc    597762 Jan 26 19:16 input.tar.gz
[2026-01-26 20:39:29] -rw-r--r-- 2 boinc boinc     15845 Jan 26 19:16 start_atlas.sh
[2026-01-26 20:39:29] -rw------- 1 boinc boinc 182915833 Jan 26 20:38 HITS.pool.root.1
[2026-01-26 20:39:29] -rw------- 1 boinc boinc   1013760 Jan 26 20:39 result.tar.gz
20:39:31 (2038182): run_atlas exited; CPU time 14139.160186
20:39:31 (2038182): called boinc_finish(0)

</stderr_txt>
]]>

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