Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:26:49 (2938582): wrapper (7.7.26015): starting
20:26:49 (2938582): wrapper: running run_atlas (--nthreads 3)
[2026-01-26 20:26:49] Arguments: --nthreads 3
[2026-01-26 20:26:49] Threads: 3
[2026-01-26 20:26:49] Checking for CVMFS
[2026-01-26 20:26:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 20:26:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 20:26:49] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 20:26:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 20:26:50] 2.9.2.0 1575713 8413 90672 155559 3 1 23897037 36864000 0 130560 0 3904228 99.987 273476 6534 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 20:26:50] CVMFS is ok
[2026-01-26 20:26:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 20:26:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 20:26:50] Further information can be found at the LHC@home message board.
[2026-01-26 20:26:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 20:26:50] Checking for apptainer binary...
[2026-01-26 20:26:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 20:26:50] Running /usr/bin/apptainer --version
[2026-01-26 20:26:50] apptainer version 1.4.1-1.1
[2026-01-26 20:26:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 20:26:50] thA335b
[2026-01-26 20:26:50] apptainer works
[2026-01-26 20:26:50] Set ATHENA_PROC_NUMBER=3
[2026-01-26 20:26:50] Set ATHENA_CORE_NUMBER=3
[2026-01-26 20:26:50] Starting ATLAS job with PandaID=6983773144
[2026-01-26 20:26:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 21:48:12]  *** The last 200 lines of the pilot log: ***
[2026-01-26 21:48:12] 2026-01-26 20:47:48,655 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 21:48:12] 2026-01-26 20:47:48,655 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 21:48:12] 2026-01-26 20:47:48,655 | INFO     | job 6983773144 has completed (purged errors)
[2026-01-26 21:48:12] 2026-01-26 20:47:48,655 | INFO     | overall cleanup function is called
[2026-01-26 21:48:12] 2026-01-26 20:47:49,662 | INFO     | --- collectZombieJob: --- 10, [2947052]
[2026-01-26 21:48:12] 2026-01-26 20:47:49,662 | INFO     | zombie collector waiting for pid 2947052
[2026-01-26 21:48:12] 2026-01-26 20:47:49,662 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 21:48:12] 2026-01-26 20:47:49,662 | INFO     | collected zombie processes
[2026-01-26 21:48:12] 2026-01-26 20:47:49,662 | INFO     | will attempt to kill all subprocesses of pid=2947052
[2026-01-26 21:48:12] 2026-01-26 20:47:49,703 | INFO     | process IDs to be killed: [2947052] (in reverse order)
[2026-01-26 21:48:12] 2026-01-26 20:47:49,728 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 21:48:12] 2026-01-26 20:47:49,729 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 21:48:12] 2026-01-26 20:47:49,730 | INFO     | did not find any defunct processes belonging to 2947052
[2026-01-26 21:48:12] 2026-01-26 20:47:49,731 | INFO     | did not find any defunct processes belonging to 2947052
[2026-01-26 21:48:12] 2026-01-26 20:47:49,731 | INFO     | ready for new job
[2026-01-26 21:48:12] 2026-01-26 20:47:49,731 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 21:48:12] 2026-01-26 20:47:49,731 | INFO     | **************************************
[2026-01-26 21:48:12] 2026-01-26 20:47:49,732 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 21:48:12] 2026-01-26 20:47:49,732 | INFO     | **************************************
[2026-01-26 21:48:12] 2026-01-26 20:47:49,732 | INFO     | 
[2026-01-26 21:48:12] 2026-01-26 20:47:49,732 | INFO     | architecture information:
[2026-01-26 21:48:12] 2026-01-26 20:47:49,732 | INFO     | executing command: cat /etc/os-release
[2026-01-26 21:48:12] 2026-01-26 20:47:49,742 | INFO     | cat /etc/os-release:
[2026-01-26 21:48:12] NAME="CentOS Linux"
[2026-01-26 21:48:12] VERSION="7 (Core)"
[2026-01-26 21:48:12] ID="centos"
[2026-01-26 21:48:12] ID_LIKE="rhel fedora"
[2026-01-26 21:48:12] VERSION_ID="7"
[2026-01-26 21:48:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 21:48:12] ANSI_COLOR="0;31"
[2026-01-26 21:48:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 21:48:12] HOME_URL="https://www.centos.org/"
[2026-01-26 21:48:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 21:48:12] 
[2026-01-26 21:48:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 21:48:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 21:48:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 21:48:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 21:48:12] 
[2026-01-26 21:48:12] 2026-01-26 20:47:49,742 | INFO     | **************************************
[2026-01-26 21:48:12] 2026-01-26 20:47:50,245 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 21:48:12] 2026-01-26 20:47:50,258 | INFO     | sufficient remaining disk space (378785497088 B)
[2026-01-26 21:48:12] 2026-01-26 20:47:50,258 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 21:48:12] 2026-01-26 20:47:50,258 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 21:48:12] 2026-01-26 20:47:50,259 | INFO     | update_server=False
[2026-01-26 21:48:12] 2026-01-26 20:47:50,259 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 21:48:12] 2026-01-26 20:47:50,259 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 21:48:12] 2026-01-26 20:47:50,259 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 21:48:12] 2026-01-26 20:47:50,259 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-26 21:48:12] 2026-01-26 20:47:50,259 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 21:48:12] 2026-01-26 20:47:50,259 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 21:48:12] 2026-01-26 20:47:50,259 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 21:48:12] 2026-01-26 20:47:50,511 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-26 21:48:12] 2026-01-26 20:47:50,511 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-26 21:48:12] 2026-01-26 20:47:50,511 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 21:48:12] 2026-01-26 20:47:50,511 | INFO     | will abort loop
[2026-01-26 21:48:12] 2026-01-26 20:47:50,673 | INFO     | all data control threads have been joined
[2026-01-26 21:48:12] 2026-01-26 20:47:50,878 | INFO     | all job control threads have been joined
[2026-01-26 21:48:12] 2026-01-26 20:47:51,264 | INFO     | [job] retrieve thread has finished
[2026-01-26 21:48:12] 2026-01-26 20:47:51,265 | INFO     | [job] queue monitor thread has finished
[2026-01-26 21:48:12] 2026-01-26 20:47:51,517 | INFO     | [job] job monitor thread has finished
[2026-01-26 21:48:12] 2026-01-26 20:47:51,540 | INFO     | [payload] validate_post thread has finished
[2026-01-26 21:48:12] 2026-01-26 20:47:51,547 | INFO     | all payload control threads have been joined
[2026-01-26 21:48:12] 2026-01-26 20:47:51,679 | INFO     | [data] control thread has finished
[2026-01-26 21:48:12] 2026-01-26 20:47:51,813 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 21:48:12] 2026-01-26 20:47:51,813 | INFO     | [job] validate thread has finished
[2026-01-26 21:48:12] 2026-01-26 20:47:51,883 | INFO     | [job] control thread has finished
[2026-01-26 21:48:12] 2026-01-26 20:47:51,889 | INFO     | [payload] failed_post thread has finished
[2026-01-26 21:48:12] 2026-01-26 20:47:51,911 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 21:48:12] 2026-01-26 20:47:52,018 | INFO     | [data] copytool_in thread has finished
[2026-01-26 21:48:12] 2026-01-26 20:47:52,265 | INFO     | [data] copytool_out thread has finished
[2026-01-26 21:48:12] 2026-01-26 20:47:52,501 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 21:48:12] 2026-01-26 20:47:52,552 | INFO     | [payload] control thread has finished
[2026-01-26 21:48:12] 2026-01-26 20:47:53,463 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 21:48:12] 2026-01-26 20:47:57,471 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 21:48:12] 2026-01-26 20:48:00,877 | INFO     | job.realtimelogging is not enabled
[2026-01-26 21:48:12] 2026-01-26 20:48:01,882 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 21:48:12] 2026-01-26 20:48:05,036 | INFO     | [monitor] cgroup control has ended
[2026-01-26 21:48:12] 2026-01-26 20:48:06,902 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140565945976640)>', '<ExcThread(monitor, started 140565454763776)>']
[2026-01-26 21:48:12] 2026-01-26 20:48:07,348 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 21:48:12] 2026-01-26 20:48:07,348 | INFO     | [monitor] control thread has ended
[2026-01-26 21:48:12] 2026-01-26 20:48:11,927 | INFO     | all workflow threads have been joined
[2026-01-26 21:48:12] 2026-01-26 20:48:11,928 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 21:48:12] 2026-01-26 20:48:11,928 | INFO     | traces error code: 0
[2026-01-26 21:48:12] 2026-01-26 20:48:11,928 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 21:48:12] 2026-01-26 20:48:11,980 [wrapper] ==== pilot stdout END ====
[2026-01-26 21:48:12] 2026-01-26 20:48:11,983 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 21:48:12] 2026-01-26 20:48:11,985 [wrapper] pilotpid: 2942625
[2026-01-26 21:48:12] 2026-01-26 20:48:11,988 [wrapper] Pilot exit status: 0
[2026-01-26 21:48:12] 2026-01-26 20:48:11,996 [wrapper] pandaids: 6983773144
[2026-01-26 21:48:12] 2026-01-26 20:48:12,013 [wrapper] cleanup supervisor_pilot 2952075 2942626
[2026-01-26 21:48:12] 2026-01-26 20:48:12,015 [wrapper] Test setup, not cleaning
[2026-01-26 21:48:12] 2026-01-26 20:48:12,018 [wrapper] apfmon messages muted
[2026-01-26 21:48:12] 2026-01-26 20:48:12,020 [wrapper] ==== wrapper stdout END ====
[2026-01-26 21:48:12] 2026-01-26 20:48:12,023 [wrapper] ==== wrapper stderr END ====
[2026-01-26 21:48:12]  *** Error codes and diagnostics ***
[2026-01-26 21:48:12]     "exeErrorCode": 0,
[2026-01-26 21:48:12]     "exeErrorDiag": "",
[2026-01-26 21:48:12]     "pilotErrorCode": 0,
[2026-01-26 21:48:12]     "pilotErrorDiag": "",
[2026-01-26 21:48:12]  *** Listing of results directory ***
[2026-01-26 21:48:12] total 678460
[2026-01-26 21:48:12] -rw-r--r-- 1 boinc boinc    584422 Jan 26 04:16 pilot3.tar.gz
[2026-01-26 21:48:12] -rw-r--r-- 1 boinc boinc      5111 Jan 26 04:17 queuedata.json
[2026-01-26 21:48:12] -rwx------ 1 boinc boinc     36322 Jan 26 04:17 runpilot2-wrapper.sh
[2026-01-26 21:48:12] -rw-r--r-- 1 boinc boinc       100 Jan 26 20:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 21:48:12] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 20:26 run_atlas
[2026-01-26 21:48:12] -rw-r--r-- 1 boinc boinc       105 Jan 26 20:26 job.xml
[2026-01-26 21:48:12] -rw-r--r-- 2 boinc boinc 501258715 Jan 26 20:26 EVNT.48317869._000039.pool.root.1
[2026-01-26 21:48:12] -rw-r--r-- 2 boinc boinc    597752 Jan 26 20:26 input.tar.gz
[2026-01-26 21:48:12] -rw-r--r-- 2 boinc boinc     15845 Jan 26 20:26 start_atlas.sh
[2026-01-26 21:48:12] drwxrwx--x 2 boinc boinc      4096 Jan 26 20:26 shared
[2026-01-26 21:48:12] -rw-r--r-- 1 boinc boinc         0 Jan 26 20:26 boinc_setup_complete
[2026-01-26 21:48:12] -rw-r--r-- 1 boinc boinc      6445 Jan 26 20:26 init_data.xml
[2026-01-26 21:48:12] -rw-r--r-- 1 boinc boinc         0 Jan 26 20:26 boinc_lockfile
[2026-01-26 21:48:12] -rw-r--r-- 1 boinc boinc      2513 Jan 26 20:26 pandaJob.out
[2026-01-26 21:48:12] -rw------- 1 boinc boinc   1006449 Jan 26 20:26 agis_schedconf.cvmfs.json
[2026-01-26 21:48:12] -rw------- 1 boinc boinc   1516246 Jan 26 20:26 agis_ddmendpoints.agis.ALL.json
[2026-01-26 21:48:12] -rw------- 1 boinc boinc       424 Jan 26 20:26 workernode_map.json
[2026-01-26 21:48:12] drwx------ 5 boinc boinc      4096 Jan 26 20:27 pilot3
[2026-01-26 21:48:12] -rw------- 1 boinc boinc        95 Jan 26 21:47 pilot_heartbeat.json
[2026-01-26 21:48:12] -rw------- 1 boinc boinc 187639158 Jan 26 21:47 HITS.48317872._001923.pool.root.1
[2026-01-26 21:48:12] -rw-r--r-- 1 boinc boinc       530 Jan 26 21:47 boinc_task_state.xml
[2026-01-26 21:48:12] -rw------- 1 boinc boinc      1028 Jan 26 21:47 memory_monitor_summary.json
[2026-01-26 21:48:12] -rw------- 1 boinc boinc    247684 Jan 26 21:47 log.48317872._001923.job.log.tgz.1
[2026-01-26 21:48:12] -rw------- 1 boinc boinc      6294 Jan 26 21:47 heartbeat.json
[2026-01-26 21:48:12] -rw-r--r-- 1 boinc boinc      8192 Jan 26 21:48 boinc_mmap_file
[2026-01-26 21:48:12] -rw-r--r-- 1 boinc boinc        27 Jan 26 21:48 wrapper_checkpoint.txt
[2026-01-26 21:48:12] -rw------- 1 boinc boinc      4810 Jan 26 21:48 pilotlog.txt
[2026-01-26 21:48:12] -rw------- 1 boinc boinc    712035 Jan 26 21:48 log.48317872._001923.job.log.1
[2026-01-26 21:48:12] -rw------- 1 boinc boinc       357 Jan 26 21:48 output.list
[2026-01-26 21:48:12] -rw-r--r-- 1 boinc boinc       620 Jan 26 21:48 runtime_log
[2026-01-26 21:48:12] -rw------- 1 boinc boinc    972800 Jan 26 21:48 result.tar.gz
[2026-01-26 21:48:12] -rw-r--r-- 1 boinc boinc      8901 Jan 26 21:48 runtime_log.err
[2026-01-26 21:48:12] -rw------- 1 boinc boinc       658 Jan 26 21:48 J91KDmxHS48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8t8KDm6Ku8vn.diag
[2026-01-26 21:48:12] -rw-r--r-- 1 boinc boinc     11258 Jan 26 21:48 stderr.txt
[2026-01-26 21:48:12] HITS file was successfully produced:
[2026-01-26 21:48:12] -rw------- 1 boinc boinc 187639158 Jan 26 21:47 shared/HITS.pool.root.1
[2026-01-26 21:48:12]  *** Contents of shared directory: ***
[2026-01-26 21:48:12] total 674316
[2026-01-26 21:48:12] -rw-r--r-- 2 boinc boinc 501258715 Jan 26 20:26 ATLAS.root_0
[2026-01-26 21:48:12] -rw-r--r-- 2 boinc boinc    597752 Jan 26 20:26 input.tar.gz
[2026-01-26 21:48:12] -rw-r--r-- 2 boinc boinc     15845 Jan 26 20:26 start_atlas.sh
[2026-01-26 21:48:12] -rw------- 1 boinc boinc 187639158 Jan 26 21:47 HITS.pool.root.1
[2026-01-26 21:48:12] -rw------- 1 boinc boinc    972800 Jan 26 21:48 result.tar.gz
21:48:13 (2938582): run_atlas exited; CPU time 13873.932445
21:48:13 (2938582): called boinc_finish(0)

</stderr_txt>
]]>

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