Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:13:16 (2438307): wrapper (7.7.26015): starting
19:13:16 (2438307): wrapper: running run_atlas (--nthreads 3)
[2026-01-26 19:13:16] Arguments: --nthreads 3
[2026-01-26 19:13:16] Threads: 3
[2026-01-26 19:13:16] Checking for CVMFS
[2026-01-26 19:13:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 19:13:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 19:13:17] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 19:13:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 19:13:17] 2.9.2.0 1062315 8826 94292 155555 0 50 22132039 36864001 0 130560 0 3840759 99.986 280820 5390 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 19:13:17] CVMFS is ok
[2026-01-26 19:13:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 19:13:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 19:13:17] Further information can be found at the LHC@home message board.
[2026-01-26 19:13:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 19:13:17] Checking for apptainer binary...
[2026-01-26 19:13:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 19:13:17] Running /usr/bin/apptainer --version
[2026-01-26 19:13:17] apptainer version 1.4.1-1.1
[2026-01-26 19:13:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 19:13:17] atlasA223b
[2026-01-26 19:13:17] apptainer works
[2026-01-26 19:13:17] Set ATHENA_PROC_NUMBER=3
[2026-01-26 19:13:17] Set ATHENA_CORE_NUMBER=3
[2026-01-26 19:13:17] Starting ATLAS job with PandaID=6983772508
[2026-01-26 19:13:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 20:40:40]  *** The last 200 lines of the pilot log: ***
[2026-01-26 20:40:40] 2026-01-26 19:39:37,862 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 20:40:40] 2026-01-26 19:39:37,862 | INFO     | collected zombie processes
[2026-01-26 20:40:40] 2026-01-26 19:39:37,862 | INFO     | will attempt to kill all subprocesses of pid=2446774
[2026-01-26 20:40:40] 2026-01-26 19:39:37,912 | INFO     | process IDs to be killed: [2446774] (in reverse order)
[2026-01-26 20:40:40] 2026-01-26 19:39:37,942 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 20:40:40] 2026-01-26 19:39:37,942 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 20:40:40] 2026-01-26 19:39:37,944 | INFO     | did not find any defunct processes belonging to 2446774
[2026-01-26 20:40:40] 2026-01-26 19:39:37,945 | INFO     | did not find any defunct processes belonging to 2446774
[2026-01-26 20:40:40] 2026-01-26 19:39:37,945 | INFO     | ready for new job
[2026-01-26 20:40:40] 2026-01-26 19:39:37,945 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 20:40:40] 2026-01-26 19:39:37,946 | INFO     | **************************************
[2026-01-26 20:40:40] 2026-01-26 19:39:37,946 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 20:40:40] 2026-01-26 19:39:37,946 | INFO     | **************************************
[2026-01-26 20:40:40] 2026-01-26 19:39:37,946 | INFO     | 
[2026-01-26 20:40:40] 2026-01-26 19:39:37,947 | INFO     | architecture information:
[2026-01-26 20:40:40] 2026-01-26 19:39:37,947 | INFO     | executing command: cat /etc/os-release
[2026-01-26 20:40:40] 2026-01-26 19:39:37,957 | INFO     | cat /etc/os-release:
[2026-01-26 20:40:40] NAME="CentOS Linux"
[2026-01-26 20:40:40] VERSION="7 (Core)"
[2026-01-26 20:40:40] ID="centos"
[2026-01-26 20:40:40] ID_LIKE="rhel fedora"
[2026-01-26 20:40:40] VERSION_ID="7"
[2026-01-26 20:40:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 20:40:40] ANSI_COLOR="0;31"
[2026-01-26 20:40:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 20:40:40] HOME_URL="https://www.centos.org/"
[2026-01-26 20:40:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 20:40:40] 
[2026-01-26 20:40:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 20:40:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 20:40:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 20:40:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 20:40:40] 
[2026-01-26 20:40:40] 2026-01-26 19:39:37,957 | INFO     | **************************************
[2026-01-26 20:40:40] 2026-01-26 19:39:38,460 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 20:40:40] 2026-01-26 19:39:38,470 | INFO     | sufficient remaining disk space (381095510016 B)
[2026-01-26 20:40:40] 2026-01-26 19:39:38,470 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 20:40:40] 2026-01-26 19:39:38,470 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 20:40:40] 2026-01-26 19:39:38,470 | INFO     | update_server=False
[2026-01-26 20:40:40] 2026-01-26 19:39:38,470 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 20:40:40] 2026-01-26 19:39:38,471 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 20:40:40] 2026-01-26 19:39:38,471 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-26 20:40:40] 2026-01-26 19:39:38,471 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 20:40:40] 2026-01-26 19:39:38,471 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 20:40:40] 2026-01-26 19:39:38,471 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 20:40:40] 2026-01-26 19:39:38,471 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 20:40:40] 2026-01-26 19:39:38,611 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-26 20:40:40] 2026-01-26 19:39:38,611 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-26 20:40:40] 2026-01-26 19:39:38,611 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 20:40:40] 2026-01-26 19:39:38,611 | INFO     | will abort loop
[2026-01-26 20:40:40] 2026-01-26 19:39:39,021 | INFO     | all job control threads have been joined
[2026-01-26 20:40:40] 2026-01-26 19:39:39,256 | INFO     | all data control threads have been joined
[2026-01-26 20:40:40] 2026-01-26 19:39:39,476 | INFO     | [job] retrieve thread has finished
[2026-01-26 20:40:40] 2026-01-26 19:39:39,476 | INFO     | [job] queue monitor thread has finished
[2026-01-26 20:40:40] 2026-01-26 19:39:39,506 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 20:40:40] 2026-01-26 19:39:39,556 | INFO     | all payload control threads have been joined
[2026-01-26 20:40:40] 2026-01-26 19:39:39,574 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 20:40:40] 2026-01-26 19:39:39,597 | INFO     | [data] copytool_in thread has finished
[2026-01-26 20:40:40] 2026-01-26 19:39:39,616 | INFO     | [job] job monitor thread has finished
[2026-01-26 20:40:40] 2026-01-26 19:39:40,026 | INFO     | [job] control thread has finished
[2026-01-26 20:40:40] 2026-01-26 19:39:40,035 | INFO     | [payload] failed_post thread has finished
[2026-01-26 20:40:40] 2026-01-26 19:39:40,261 | INFO     | [data] control thread has finished
[2026-01-26 20:40:40] 2026-01-26 19:39:40,436 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 20:40:40] 2026-01-26 19:39:40,476 | INFO     | [data] copytool_out thread has finished
[2026-01-26 20:40:40] 2026-01-26 19:39:40,561 | INFO     | [payload] control thread has finished
[2026-01-26 20:40:40] 2026-01-26 19:39:40,570 | INFO     | [payload] validate_post thread has finished
[2026-01-26 20:40:40] 2026-01-26 19:39:40,731 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 20:40:40] 2026-01-26 19:39:40,848 | INFO     | [job] validate thread has finished
[2026-01-26 20:40:40] 2026-01-26 19:39:40,894 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 20:40:40] 2026-01-26 19:39:44,737 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 20:40:40] 2026-01-26 19:40:33,560 | INFO     | [monitor] cgroup control has ended
[2026-01-26 20:40:40] 2026-01-26 19:40:34,877 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139672009602880)>', '<ExcThread(monitor, started 139670843283200)>']
[2026-01-26 20:40:40] 2026-01-26 19:40:35,756 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 20:40:40] 2026-01-26 19:40:35,756 | INFO     | [monitor] control thread has ended
[2026-01-26 20:40:40] 2026-01-26 19:40:39,902 | INFO     | all workflow threads have been joined
[2026-01-26 20:40:40] 2026-01-26 19:40:39,902 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 20:40:40] 2026-01-26 19:40:39,903 | INFO     | traces error code: 0
[2026-01-26 20:40:40] 2026-01-26 19:40:39,903 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 20:40:40] 2026-01-26 19:40:39,953 [wrapper] ==== pilot stdout END ====
[2026-01-26 20:40:40] 2026-01-26 19:40:39,956 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 20:40:40] 2026-01-26 19:40:39,958 [wrapper] pilotpid: 2442343
[2026-01-26 20:40:40] 2026-01-26 19:40:39,961 [wrapper] Pilot exit status: 0
[2026-01-26 20:40:40] 2026-01-26 19:40:39,969 [wrapper] pandaids: 6983772508
[2026-01-26 20:40:40] 2026-01-26 19:40:39,990 [wrapper] cleanup supervisor_pilot 2452205 2442344
[2026-01-26 20:40:40] 2026-01-26 19:40:39,992 [wrapper] Test setup, not cleaning
[2026-01-26 20:40:40] 2026-01-26 19:40:39,995 [wrapper] apfmon messages muted
[2026-01-26 20:40:40] 2026-01-26 19:40:39,997 [wrapper] ==== wrapper stdout END ====
[2026-01-26 20:40:40] 2026-01-26 19:40:40,000 [wrapper] ==== wrapper stderr END ====
[2026-01-26 20:40:40]  *** Error codes and diagnostics ***
[2026-01-26 20:40:40]     "exeErrorCode": 0,
[2026-01-26 20:40:40]     "exeErrorDiag": "",
[2026-01-26 20:40:40]     "pilotErrorCode": 0,
[2026-01-26 20:40:40]     "pilotErrorDiag": "",
[2026-01-26 20:40:40]  *** Listing of results directory ***
[2026-01-26 20:40:40] total 676320
[2026-01-26 20:40:40] -rw-r--r-- 1 boinc boinc    584422 Jan 26 04:16 pilot3.tar.gz
[2026-01-26 20:40:40] -rwx------ 1 boinc boinc     36322 Jan 26 04:17 runpilot2-wrapper.sh
[2026-01-26 20:40:40] -rw-r--r-- 1 boinc boinc      5111 Jan 26 04:17 queuedata.json
[2026-01-26 20:40:40] -rw-r--r-- 1 boinc boinc       100 Jan 26 19:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 20:40:40] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 19:13 run_atlas
[2026-01-26 20:40:40] -rw-r--r-- 1 boinc boinc       105 Jan 26 19:13 job.xml
[2026-01-26 20:40:40] -rw-r--r-- 2 boinc boinc 505466728 Jan 26 19:13 EVNT.48317869._000036.pool.root.1
[2026-01-26 20:40:40] -rw-r--r-- 2 boinc boinc    597745 Jan 26 19:13 input.tar.gz
[2026-01-26 20:40:40] -rw-r--r-- 2 boinc boinc     15845 Jan 26 19:13 start_atlas.sh
[2026-01-26 20:40:40] drwxrwx--x 2 boinc boinc      4096 Jan 26 19:13 shared
[2026-01-26 20:40:40] -rw-r--r-- 1 boinc boinc         0 Jan 26 19:13 boinc_setup_complete
[2026-01-26 20:40:40] -rw-r--r-- 1 boinc boinc      6449 Jan 26 19:13 init_data.xml
[2026-01-26 20:40:40] -rw-r--r-- 1 boinc boinc         0 Jan 26 19:13 boinc_lockfile
[2026-01-26 20:40:40] -rw-r--r-- 1 boinc boinc      2510 Jan 26 19:13 pandaJob.out
[2026-01-26 20:40:40] -rw------- 1 boinc boinc   1006384 Jan 26 19:13 agis_schedconf.cvmfs.json
[2026-01-26 20:40:40] -rw------- 1 boinc boinc   1516246 Jan 26 19:13 agis_ddmendpoints.agis.ALL.json
[2026-01-26 20:40:40] -rw------- 1 boinc boinc       419 Jan 26 19:13 workernode_map.json
[2026-01-26 20:40:40] drwx------ 5 boinc boinc      4096 Jan 26 19:13 pilot3
[2026-01-26 20:40:40] -rw------- 1 boinc boinc        95 Jan 26 20:38 pilot_heartbeat.json
[2026-01-26 20:40:40] -rw------- 1 boinc boinc 181169638 Jan 26 20:39 HITS.48317872._001763.pool.root.1
[2026-01-26 20:40:40] -rw-r--r-- 1 boinc boinc       530 Jan 26 20:39 boinc_task_state.xml
[2026-01-26 20:40:40] -rw------- 1 boinc boinc      1015 Jan 26 20:39 memory_monitor_summary.json
[2026-01-26 20:40:40] -rw------- 1 boinc boinc    239005 Jan 26 20:39 log.48317872._001763.job.log.tgz.1
[2026-01-26 20:40:40] -rw------- 1 boinc boinc      6285 Jan 26 20:39 heartbeat.json
[2026-01-26 20:40:40] -rw-r--r-- 1 boinc boinc      8192 Jan 26 20:40 boinc_mmap_file
[2026-01-26 20:40:40] -rw-r--r-- 1 boinc boinc        27 Jan 26 20:40 wrapper_checkpoint.txt
[2026-01-26 20:40:40] -rw------- 1 boinc boinc      4738 Jan 26 20:40 pilotlog.txt
[2026-01-26 20:40:40] -rw------- 1 boinc boinc    753524 Jan 26 20:40 log.48317872._001763.job.log.1
[2026-01-26 20:40:40] -rw------- 1 boinc boinc       357 Jan 26 20:40 output.list
[2026-01-26 20:40:40] -rw-r--r-- 1 boinc boinc       620 Jan 26 20:40 runtime_log
[2026-01-26 20:40:40] -rw------- 1 boinc boinc   1013760 Jan 26 20:40 result.tar.gz
[2026-01-26 20:40:40] -rw------- 1 boinc boinc       661 Jan 26 20:40 zoMKDmmHS48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGJ2KDm3YFcpm.diag
[2026-01-26 20:40:40] -rw-r--r-- 1 boinc boinc      8916 Jan 26 20:40 runtime_log.err
[2026-01-26 20:40:40] -rw-r--r-- 1 boinc boinc     10567 Jan 26 20:40 stderr.txt
[2026-01-26 20:40:40] HITS file was successfully produced:
[2026-01-26 20:40:40] -rw------- 1 boinc boinc 181169638 Jan 26 20:39 shared/HITS.pool.root.1
[2026-01-26 20:40:40]  *** Contents of shared directory: ***
[2026-01-26 20:40:40] total 672144
[2026-01-26 20:40:40] -rw-r--r-- 2 boinc boinc 505466728 Jan 26 19:13 ATLAS.root_0
[2026-01-26 20:40:40] -rw-r--r-- 2 boinc boinc    597745 Jan 26 19:13 input.tar.gz
[2026-01-26 20:40:40] -rw-r--r-- 2 boinc boinc     15845 Jan 26 19:13 start_atlas.sh
[2026-01-26 20:40:40] -rw------- 1 boinc boinc 181169638 Jan 26 20:39 HITS.pool.root.1
[2026-01-26 20:40:40] -rw------- 1 boinc boinc   1013760 Jan 26 20:40 result.tar.gz
20:41:02 (2438307): run_atlas exited; CPU time 14853.751676
20:41:02 (2438307): called boinc_finish(0)

</stderr_txt>
]]>

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