Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:49:21 (1452100): wrapper (7.7.26015): starting
17:49:21 (1452100): wrapper: running run_atlas (--nthreads 2)
[2026-01-26 17:49:21] Arguments: --nthreads 2
[2026-01-26 17:49:21] Threads: 2
[2026-01-26 17:49:21] Checking for CVMFS
[2026-01-26 17:49:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 17:49:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 17:49:21] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 17:49:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 17:49:22] 2.9.2.0 558283 8681 68544 155554 3 49 21038162 36864000 0 130560 0 2706121 99.981 282036 4959 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 17:49:22] CVMFS is ok
[2026-01-26 17:49:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 17:49:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 17:49:22] Further information can be found at the LHC@home message board.
[2026-01-26 17:49:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 17:49:22] Checking for apptainer binary...
[2026-01-26 17:49:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 17:49:22] Running /usr/bin/apptainer --version
[2026-01-26 17:49:22] apptainer version 1.4.1-1.1
[2026-01-26 17:49:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 17:49:22] thA314b
[2026-01-26 17:49:22] apptainer works
[2026-01-26 17:49:22] Set ATHENA_PROC_NUMBER=2
[2026-01-26 17:49:22] Set ATHENA_CORE_NUMBER=2
[2026-01-26 17:49:22] Starting ATLAS job with PandaID=6983466795
[2026-01-26 17:49:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 19:58:00]  *** The last 200 lines of the pilot log: ***
[2026-01-26 19:58:00] 2026-01-26 18:56:55,547 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 19:58:00] 2026-01-26 18:56:55,547 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 19:58:00] 2026-01-26 18:56:55,547 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 19:58:00] 2026-01-26 18:56:55,547 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 19:58:00] 2026-01-26 18:56:55,547 | INFO     | job 6983466795 has completed (purged errors)
[2026-01-26 19:58:00] 2026-01-26 18:56:55,547 | INFO     | overall cleanup function is called
[2026-01-26 19:58:00] 2026-01-26 18:56:56,553 | INFO     | --- collectZombieJob: --- 10, [1460534]
[2026-01-26 19:58:00] 2026-01-26 18:56:56,554 | INFO     | zombie collector waiting for pid 1460534
[2026-01-26 19:58:00] 2026-01-26 18:56:56,554 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 19:58:00] 2026-01-26 18:56:56,554 | INFO     | collected zombie processes
[2026-01-26 19:58:00] 2026-01-26 18:56:56,554 | INFO     | will attempt to kill all subprocesses of pid=1460534
[2026-01-26 19:58:00] 2026-01-26 18:56:56,587 | INFO     | process IDs to be killed: [1460534] (in reverse order)
[2026-01-26 19:58:00] 2026-01-26 18:56:56,607 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 19:58:00] 2026-01-26 18:56:56,607 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 19:58:00] 2026-01-26 18:56:56,607 | INFO     | did not find any defunct processes belonging to 1460534
[2026-01-26 19:58:00] 2026-01-26 18:56:56,608 | INFO     | did not find any defunct processes belonging to 1460534
[2026-01-26 19:58:00] 2026-01-26 18:56:56,608 | INFO     | ready for new job
[2026-01-26 19:58:00] 2026-01-26 18:56:56,608 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 19:58:00] 2026-01-26 18:56:56,609 | INFO     | **************************************
[2026-01-26 19:58:00] 2026-01-26 18:56:56,609 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 19:58:00] 2026-01-26 18:56:56,609 | INFO     | **************************************
[2026-01-26 19:58:00] 2026-01-26 18:56:56,609 | INFO     | 
[2026-01-26 19:58:00] 2026-01-26 18:56:56,609 | INFO     | architecture information:
[2026-01-26 19:58:00] 2026-01-26 18:56:56,609 | INFO     | executing command: cat /etc/os-release
[2026-01-26 19:58:00] 2026-01-26 18:56:56,617 | INFO     | cat /etc/os-release:
[2026-01-26 19:58:00] NAME="CentOS Linux"
[2026-01-26 19:58:00] VERSION="7 (Core)"
[2026-01-26 19:58:00] ID="centos"
[2026-01-26 19:58:00] ID_LIKE="rhel fedora"
[2026-01-26 19:58:00] VERSION_ID="7"
[2026-01-26 19:58:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 19:58:00] ANSI_COLOR="0;31"
[2026-01-26 19:58:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 19:58:00] HOME_URL="https://www.centos.org/"
[2026-01-26 19:58:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 19:58:00] 
[2026-01-26 19:58:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 19:58:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 19:58:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 19:58:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 19:58:00] 
[2026-01-26 19:58:00] 2026-01-26 18:56:56,617 | INFO     | **************************************
[2026-01-26 19:58:00] 2026-01-26 18:56:57,121 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 19:58:00] 2026-01-26 18:56:57,133 | INFO     | sufficient remaining disk space (502151512064 B)
[2026-01-26 19:58:00] 2026-01-26 18:56:57,133 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 19:58:00] 2026-01-26 18:56:57,133 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 19:58:00] 2026-01-26 18:56:57,133 | INFO     | update_server=False
[2026-01-26 19:58:00] 2026-01-26 18:56:57,133 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 19:58:00] 2026-01-26 18:56:57,133 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 19:58:00] 2026-01-26 18:56:57,206 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 19:58:00] 2026-01-26 18:56:57,206 | INFO     | aborting loop
[2026-01-26 19:58:00] 2026-01-26 18:56:57,514 | INFO     | all payload control threads have been joined
[2026-01-26 19:58:00] 2026-01-26 18:56:57,881 | INFO     | all data control threads have been joined
[2026-01-26 19:58:00] 2026-01-26 18:56:58,139 | INFO     | [job] retrieve thread has finished
[2026-01-26 19:58:00] 2026-01-26 18:56:58,140 | INFO     | [job] queue monitor thread has finished
[2026-01-26 19:58:00] 2026-01-26 18:56:58,212 | INFO     | [job] job monitor thread has finished
[2026-01-26 19:58:00] 2026-01-26 18:56:58,261 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 19:58:00] 2026-01-26 18:56:58,398 | INFO     | all job control threads have been joined
[2026-01-26 19:58:00] 2026-01-26 18:56:58,452 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 19:58:00] 2026-01-26 18:56:58,520 | INFO     | [payload] control thread has finished
[2026-01-26 19:58:00] 2026-01-26 18:56:58,650 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 19:58:00] 2026-01-26 18:56:58,712 | INFO     | [job] validate thread has finished
[2026-01-26 19:58:00] 2026-01-26 18:56:58,806 | INFO     | [data] copytool_in thread has finished
[2026-01-26 19:58:00] 2026-01-26 18:56:58,851 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 19:58:00] 2026-01-26 18:56:58,887 | INFO     | [data] control thread has finished
[2026-01-26 19:58:00] 2026-01-26 18:56:58,978 | INFO     | [payload] validate_post thread has finished
[2026-01-26 19:58:00] 2026-01-26 18:56:59,252 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 19:58:00] 2026-01-26 18:56:59,271 | INFO     | [payload] failed_post thread has finished
[2026-01-26 19:58:00] 2026-01-26 18:56:59,404 | INFO     | [job] control thread has finished
[2026-01-26 19:58:00] 2026-01-26 18:57:00,267 | INFO     | [data] copytool_out thread has finished
[2026-01-26 19:58:00] 2026-01-26 18:57:03,259 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 19:58:00] 2026-01-26 18:57:08,053 | INFO     | job.realtimelogging is not enabled
[2026-01-26 19:58:00] 2026-01-26 18:57:09,058 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 19:58:00] 2026-01-26 18:57:27,273 | INFO     | PID=1456125 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 19:58:00] 2026-01-26 18:57:27,273 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 19:58:00] 2026-01-26 18:57:27,273 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 19:58:00] 2026-01-26 18:57:27,273 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 19:58:00] 2026-01-26 18:57:53,392 | INFO     | [monitor] cgroup control has ended
[2026-01-26 19:58:00] 2026-01-26 18:57:55,487 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140250036229952)>', '<ExcThread(monitor, started 140249405585152)>']
[2026-01-26 19:58:00] 2026-01-26 18:57:56,428 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 19:58:00] 2026-01-26 18:57:56,428 | INFO     | [monitor] control thread has ended
[2026-01-26 19:58:00] 2026-01-26 18:58:00,509 | INFO     | all workflow threads have been joined
[2026-01-26 19:58:00] 2026-01-26 18:58:00,510 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 19:58:00] 2026-01-26 18:58:00,510 | INFO     | traces error code: 0
[2026-01-26 19:58:00] 2026-01-26 18:58:00,510 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 19:58:00] 2026-01-26 18:58:00,553 [wrapper] ==== pilot stdout END ====
[2026-01-26 19:58:00] 2026-01-26 18:58:00,555 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 19:58:00] 2026-01-26 18:58:00,558 [wrapper] pilotpid: 1456125
[2026-01-26 19:58:00] 2026-01-26 18:58:00,560 [wrapper] Pilot exit status: 0
[2026-01-26 19:58:00] 2026-01-26 18:58:00,566 [wrapper] pandaids: 6983466795
[2026-01-26 19:58:00] 2026-01-26 18:58:00,577 [wrapper] cleanup supervisor_pilot 1465418 1456126
[2026-01-26 19:58:00] 2026-01-26 18:58:00,578 [wrapper] Test setup, not cleaning
[2026-01-26 19:58:00] 2026-01-26 18:58:00,580 [wrapper] apfmon messages muted
[2026-01-26 19:58:00] 2026-01-26 18:58:00,582 [wrapper] ==== wrapper stdout END ====
[2026-01-26 19:58:00] 2026-01-26 18:58:00,584 [wrapper] ==== wrapper stderr END ====
[2026-01-26 19:58:00]  *** Error codes and diagnostics ***
[2026-01-26 19:58:00]     "exeErrorCode": 0,
[2026-01-26 19:58:00]     "exeErrorDiag": "",
[2026-01-26 19:58:00]     "pilotErrorCode": 0,
[2026-01-26 19:58:00]     "pilotErrorDiag": "",
[2026-01-26 19:58:00]  *** Listing of results directory ***
[2026-01-26 19:58:00] total 672688
[2026-01-26 19:58:00] -rw-r--r-- 1 boinc boinc    584422 Jan 25 23:54 pilot3.tar.gz
[2026-01-26 19:58:00] -rw-r--r-- 1 boinc boinc      5111 Jan 25 23:54 queuedata.json
[2026-01-26 19:58:00] -rwx------ 1 boinc boinc     36322 Jan 25 23:54 runpilot2-wrapper.sh
[2026-01-26 19:58:00] -rw-r--r-- 1 boinc boinc       100 Jan 26 17:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 19:58:00] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 17:49 run_atlas
[2026-01-26 19:58:00] -rw-r--r-- 1 boinc boinc       105 Jan 26 17:49 job.xml
[2026-01-26 19:58:00] -rw-r--r-- 2 boinc boinc 498967428 Jan 26 17:49 EVNT.48318032._000031.pool.root.1
[2026-01-26 19:58:00] -rw-r--r-- 2 boinc boinc    597757 Jan 26 17:49 input.tar.gz
[2026-01-26 19:58:00] -rw-r--r-- 2 boinc boinc     15845 Jan 26 17:49 start_atlas.sh
[2026-01-26 19:58:00] drwxrwx--x 2 boinc boinc      4096 Jan 26 17:49 shared
[2026-01-26 19:58:00] -rw-r--r-- 1 boinc boinc         0 Jan 26 17:49 boinc_setup_complete
[2026-01-26 19:58:00] -rw-r--r-- 1 boinc boinc      6207 Jan 26 17:49 init_data.xml
[2026-01-26 19:58:00] -rw-r--r-- 1 boinc boinc         0 Jan 26 17:49 boinc_lockfile
[2026-01-26 19:58:00] -rw-r--r-- 1 boinc boinc      2532 Jan 26 17:49 pandaJob.out
[2026-01-26 19:58:00] -rw------- 1 boinc boinc   1006276 Jan 26 17:49 agis_schedconf.cvmfs.json
[2026-01-26 19:58:00] -rw------- 1 boinc boinc   1516246 Jan 26 17:49 agis_ddmendpoints.agis.ALL.json
[2026-01-26 19:58:00] -rw------- 1 boinc boinc       419 Jan 26 17:49 workernode_map.json
[2026-01-26 19:58:00] drwx------ 5 boinc boinc      4096 Jan 26 17:49 pilot3
[2026-01-26 19:58:00] -rw------- 1 boinc boinc 183168744 Jan 26 19:56 HITS.48318034._001521.pool.root.1
[2026-01-26 19:58:00] -rw-r--r-- 1 boinc boinc       530 Jan 26 19:56 boinc_task_state.xml
[2026-01-26 19:58:00] -rw------- 1 boinc boinc      1011 Jan 26 19:56 memory_monitor_summary.json
[2026-01-26 19:58:00] -rw------- 1 boinc boinc    285390 Jan 26 19:56 log.48318034._001521.job.log.tgz.1
[2026-01-26 19:58:00] -rw------- 1 boinc boinc      6291 Jan 26 19:56 heartbeat.json
[2026-01-26 19:58:00] -rw------- 1 boinc boinc        95 Jan 26 19:57 pilot_heartbeat.json
[2026-01-26 19:58:00] -rw-r--r-- 1 boinc boinc      8192 Jan 26 19:57 boinc_mmap_file
[2026-01-26 19:58:00] -rw-r--r-- 1 boinc boinc        27 Jan 26 19:57 wrapper_checkpoint.txt
[2026-01-26 19:58:00] -rw------- 1 boinc boinc      4820 Jan 26 19:58 pilotlog.txt
[2026-01-26 19:58:00] -rw------- 1 boinc boinc   1097242 Jan 26 19:58 log.48318034._001521.job.log.1
[2026-01-26 19:58:00] -rw------- 1 boinc boinc       357 Jan 26 19:58 output.list
[2026-01-26 19:58:00] -rw-r--r-- 1 boinc boinc       620 Jan 26 19:58 runtime_log
[2026-01-26 19:58:00] -rw------- 1 boinc boinc   1402880 Jan 26 19:58 result.tar.gz
[2026-01-26 19:58:00] -rw-r--r-- 1 boinc boinc      8901 Jan 26 19:58 runtime_log.err
[2026-01-26 19:58:00] -rw------- 1 boinc boinc       658 Jan 26 19:58 mcWKDm3AO48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOv1KDmrqWjbm.diag
[2026-01-26 19:58:00] -rw-r--r-- 1 boinc boinc     11303 Jan 26 19:58 stderr.txt
[2026-01-26 19:58:00] HITS file was successfully produced:
[2026-01-26 19:58:00] -rw------- 1 boinc boinc 183168744 Jan 26 19:56 shared/HITS.pool.root.1
[2026-01-26 19:58:00]  *** Contents of shared directory: ***
[2026-01-26 19:58:00] total 668132
[2026-01-26 19:58:00] -rw-r--r-- 2 boinc boinc 498967428 Jan 26 17:49 ATLAS.root_0
[2026-01-26 19:58:00] -rw-r--r-- 2 boinc boinc    597757 Jan 26 17:49 input.tar.gz
[2026-01-26 19:58:00] -rw-r--r-- 2 boinc boinc     15845 Jan 26 17:49 start_atlas.sh
[2026-01-26 19:58:00] -rw------- 1 boinc boinc 183168744 Jan 26 19:56 HITS.pool.root.1
[2026-01-26 19:58:00] -rw------- 1 boinc boinc   1402880 Jan 26 19:58 result.tar.gz
19:58:01 (1452100): run_atlas exited; CPU time 14832.386735
19:58:01 (1452100): called boinc_finish(0)

</stderr_txt>
]]>

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