Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:55:42 (3607444): wrapper (7.7.26015): starting
01:55:42 (3607444): wrapper: running run_atlas (--nthreads 4)
[2026-01-28 01:55:42] Arguments: --nthreads 4
[2026-01-28 01:55:42] Threads: 4
[2026-01-28 01:55:42] Checking for CVMFS
[2026-01-28 01:55:42] No cvmfs_config command found, will try listing directly
[2026-01-28 01:55:42] CVMFS is ok
[2026-01-28 01:55:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 01:55:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 01:55:42] Further information can be found at the LHC@home message board.
[2026-01-28 01:55:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 01:55:42] Checking for apptainer binary...
[2026-01-28 01:55:42] which: no apptainer in ((null))
[2026-01-28 01:55:42] apptainer is not installed, using version from CVMFS
[2026-01-28 01:55:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 01:55:42] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot108/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2026-01-28 01:55:42] apptainer works
[2026-01-28 01:55:42] Set ATHENA_PROC_NUMBER=4
[2026-01-28 01:55:42] Set ATHENA_CORE_NUMBER=4
[2026-01-28 01:55:42] Starting ATLAS job with PandaID=6983449546
[2026-01-28 01:55:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot108/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 05:19:21]  *** The last 200 lines of the pilot log: ***
[2026-01-28 05:19:21] 2026-01-28 04:16:31,002 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-28 05:19:21] 2026-01-28 04:16:31,002 | INFO     | log transfer has been attempted: DONE
[2026-01-28 05:19:21] 2026-01-28 04:16:31,002 | INFO     | job 6983449546 has finished - writing final server update
[2026-01-28 05:19:21] 2026-01-28 04:16:31,003 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2875054/.job.ad'
[2026-01-28 05:19:21] 2026-01-28 04:16:31,003 | INFO     | total number of processed events: 400 (read)
[2026-01-28 05:19:21] 2026-01-28 04:16:31,027 | INFO     | using path: /scratch/boinc/var/slot108/slots/0/PanDA_Pilot-6983449546/memory_monitor_summary.json (trf name=prmon)
[2026-01-28 05:19:21] 2026-01-28 04:16:31,028 | INFO     | extracted standard info from prmon json
[2026-01-28 05:19:21] 2026-01-28 04:16:31,028 | INFO     | extracted standard memory fields from prmon json
[2026-01-28 05:19:21] 2026-01-28 04:16:31,028 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-28 05:19:21] 2026-01-28 04:16:31,028 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-28 05:19:21] 2026-01-28 04:16:31,029 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-28 05:19:21] 2026-01-28 04:16:31,032 | INFO     | fitting pss+swap vs Time
[2026-01-28 05:19:21] 2026-01-28 04:16:31,033 | INFO     | sum of square deviations: 2370641658.0
[2026-01-28 05:19:21] 2026-01-28 04:16:31,034 | INFO     | sum of deviations: 19576723473.000004
[2026-01-28 05:19:21] 2026-01-28 04:16:31,034 | INFO     | mean x: 1769567768.0
[2026-01-28 05:19:21] 2026-01-28 04:16:31,034 | INFO     | mean y: 2324712.7969543147
[2026-01-28 05:19:21] 2026-01-28 04:16:31,034 | INFO     | intersect: -14610739536.692339
[2026-01-28 05:19:21] 2026-01-28 04:16:31,035 | INFO     | chi2: 1.286392227457557
[2026-01-28 05:19:21] 2026-01-28 04:16:31,035 | INFO     | sum of square deviations: 2194675568.0
[2026-01-28 05:19:21] 2026-01-28 04:16:31,036 | INFO     | sum of deviations: 19036900130.0
[2026-01-28 05:19:21] 2026-01-28 04:16:31,036 | INFO     | mean x: 1769567615.5
[2026-01-28 05:19:21] 2026-01-28 04:16:31,037 | INFO     | mean y: 2324245.21875
[2026-01-28 05:19:21] 2026-01-28 04:16:31,037 | INFO     | intersect: -15347134445.048923
[2026-01-28 05:19:21] 2026-01-28 04:16:31,037 | INFO     | chi2: 1.2871934800575995
[2026-01-28 05:19:21] 2026-01-28 04:16:31,037 | INFO     | current chi2=1.2871934800575995 (change=-0.06228680358447879 %)
[2026-01-28 05:19:21] 2026-01-28 04:16:31,037 | INFO     | right removable region: 191
[2026-01-28 05:19:21] 2026-01-28 04:16:31,037 | INFO     | sum of square deviations: 2194675568.0
[2026-01-28 05:19:21] 2026-01-28 04:16:31,039 | INFO     | sum of deviations: -3842034461.5000024
[2026-01-28 05:19:21] 2026-01-28 04:16:31,039 | INFO     | mean x: 1769567920.5
[2026-01-28 05:19:21] 2026-01-28 04:16:31,039 | INFO     | mean y: 2344719.2239583335
[2026-01-28 05:19:21] 2026-01-28 04:16:31,039 | INFO     | intersect: 3100178873.6915207
[2026-01-28 05:19:21] 2026-01-28 04:16:31,040 | INFO     | chi2: 0.01584846277820344
[2026-01-28 05:19:21] 2026-01-28 04:16:31,040 | INFO     | current chi2=0.01584846277820344 (change=98.76799140729212 %)
[2026-01-28 05:19:21] 2026-01-28 04:16:31,040 | INFO     | sum of square deviations: 2027639878.0
[2026-01-28 05:19:21] 2026-01-28 04:16:31,041 | INFO     | sum of deviations: -2442246934.999999
[2026-01-28 05:19:21] 2026-01-28 04:16:31,041 | INFO     | mean x: 1769568073.0
[2026-01-28 05:19:21] 2026-01-28 04:16:31,041 | INFO     | mean y: 2343440.8288770053
[2026-01-28 05:19:21] 2026-01-28 04:16:31,042 | INFO     | intersect: 2133748652.1038272
[2026-01-28 05:19:21] 2026-01-28 04:16:31,042 | INFO     | chi2: 0.01442726596159541
[2026-01-28 05:19:21] 2026-01-28 04:16:31,042 | INFO     | current chi2=0.01442726596159541 (change=8.967411139474146 %)
[2026-01-28 05:19:21] 2026-01-28 04:16:31,042 | INFO     | left removable region: 20
[2026-01-28 05:19:21] 2026-01-28 04:16:31,042 | INFO     | sum of square deviations: 1550429070.0
[2026-01-28 05:19:21] 2026-01-28 04:16:31,043 | INFO     | sum of deviations: 1829898191.0
[2026-01-28 05:19:21] 2026-01-28 04:16:31,043 | INFO     | mean x: 1769568195.0
[2026-01-28 05:19:21] 2026-01-28 04:16:31,044 | INFO     | mean y: 2338950.0935672517
[2026-01-28 05:19:21] 2026-01-28 04:16:31,044 | INFO     | intersect: -2086198798.2870378
[2026-01-28 05:19:21] 2026-01-28 04:16:31,044 | INFO     | chi2: 0.00027478091132503526
[2026-01-28 05:19:21] 2026-01-28 04:16:31,044 | INFO     | current memory leak: 1.18 B/s (using 171 data points, chi2=0.00)
[2026-01-28 05:19:21] 2026-01-28 04:16:31,045 | INFO     | could have reported an average CPU frequency of 2696 MHz (10 samples)
[2026-01-28 05:19:21] 2026-01-28 04:16:31,045 | INFO     | ..............................
[2026-01-28 05:19:21] 2026-01-28 04:16:31,045 | INFO     | . Timing measurements:
[2026-01-28 05:19:21] 2026-01-28 04:16:31,045 | INFO     | . get job = 0 s
[2026-01-28 05:19:21] 2026-01-28 04:16:31,045 | INFO     | . initial setup = 8 s
[2026-01-28 05:19:21] 2026-01-28 04:16:31,045 | INFO     | . payload setup = 8 s
[2026-01-28 05:19:21] 2026-01-28 04:16:31,045 | INFO     | . stage-in = 0 s
[2026-01-28 05:19:21] 2026-01-28 04:16:31,045 | INFO     | . payload execution = 12000 s
[2026-01-28 05:19:21] 2026-01-28 04:16:31,045 | INFO     | . stage-out = 1 s
[2026-01-28 05:19:21] 2026-01-28 04:16:31,045 | INFO     | . log creation = 0 s
[2026-01-28 05:19:21] 2026-01-28 04:16:31,045 | INFO     | ..............................
[2026-01-28 05:19:21] 2026-01-28 04:16:31,144 | INFO     | 
[2026-01-28 05:19:21] 2026-01-28 04:16:31,145 | INFO     | job summary report
[2026-01-28 05:19:21] 2026-01-28 04:16:31,145 | INFO     | --------------------------------------------------
[2026-01-28 05:19:21] 2026-01-28 04:16:31,145 | INFO     | PanDA job id: 6983449546
[2026-01-28 05:19:21] 2026-01-28 04:16:31,145 | INFO     | task id: 48329421
[2026-01-28 05:19:21] 2026-01-28 04:16:31,145 | INFO     | errors: (none)
[2026-01-28 05:19:21] 2026-01-28 04:16:31,145 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-28 05:19:21] 2026-01-28 04:16:31,145 | INFO     | pilot state: finished 
[2026-01-28 05:19:21] 2026-01-28 04:16:31,145 | INFO     | transexitcode: 0
[2026-01-28 05:19:21] 2026-01-28 04:16:31,145 | INFO     | exeerrorcode: 0
[2026-01-28 05:19:21] 2026-01-28 04:16:31,145 | INFO     | exeerrordiag: 
[2026-01-28 05:19:21] 2026-01-28 04:16:31,145 | INFO     | exitcode: 0
[2026-01-28 05:19:21] 2026-01-28 04:16:31,146 | INFO     | exitmsg: OK
[2026-01-28 05:19:21] 2026-01-28 04:16:31,146 | INFO     | cpuconsumptiontime: 46098 s
[2026-01-28 05:19:21] 2026-01-28 04:16:31,146 | INFO     | nevents: 400
[2026-01-28 05:19:21] 2026-01-28 04:16:31,146 | INFO     | neventsw: 0
[2026-01-28 05:19:21] 2026-01-28 04:16:31,146 | INFO     | pid: 3625283
[2026-01-28 05:19:21] 2026-01-28 04:16:31,146 | INFO     | pgrp: 3625283
[2026-01-28 05:19:21] 2026-01-28 04:16:31,146 | INFO     | corecount: 4
[2026-01-28 05:19:21] 2026-01-28 04:16:31,146 | INFO     | event service: False
[2026-01-28 05:19:21] 2026-01-28 04:16:31,146 | INFO     | sizes: {0: 2283931, 1: 2284392, 12: 2284392, 12012: 2314540, 12013: 2314539, 12015: 2323801, 12016: 2323939}
[2026-01-28 05:19:21] 2026-01-28 04:16:31,146 | INFO     | --------------------------------------------------
[2026-01-28 05:19:21] 2026-01-28 04:16:31,146 | INFO     | 
[2026-01-28 05:19:21] 2026-01-28 04:16:31,147 | INFO     | executing command: ls -lF /scratch/boinc/var/slot108/slots/0
[2026-01-28 05:19:21] 2026-01-28 04:16:31,177 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-28 05:19:21] 2026-01-28 04:16:31,178 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-28 05:19:21] 2026-01-28 04:16:31,178 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-28 05:19:21] 2026-01-28 04:16:31,178 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-28 05:19:21] 2026-01-28 04:16:31,178 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-28 05:19:21] 2026-01-28 04:16:31,178 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-28 05:19:21] 2026-01-28 04:16:31,178 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-28 05:19:21] 2026-01-28 04:16:31,178 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-28 05:19:21] 2026-01-28 04:16:31,178 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-28 05:19:21] 2026-01-28 04:16:31,178 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-28 05:19:21] 2026-01-28 04:16:31,178 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-28 05:19:21] 2026-01-28 04:16:31,179 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-28 05:19:21] 2026-01-28 04:16:31,179 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-28 05:19:21] 2026-01-28 04:16:31,179 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-28 05:19:21] 2026-01-28 04:16:31,179 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-28 05:19:21] 2026-01-28 04:16:31,179 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-28 05:19:21] 2026-01-28 04:16:31,179 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-28 05:19:21] 2026-01-28 04:16:31,179 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-28 05:19:21] 2026-01-28 04:16:31,179 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-28 05:19:21] 2026-01-28 04:16:31,179 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-28 05:19:21] 2026-01-28 04:16:31,179 | INFO     | job 6983449546 has completed (purged errors)
[2026-01-28 05:19:21] 2026-01-28 04:16:31,179 | INFO     | overall cleanup function is called
[2026-01-28 05:19:21] 2026-01-28 04:16:32,188 | INFO     | --- collectZombieJob: --- 10, [3625283]
[2026-01-28 05:19:21] 2026-01-28 04:16:32,189 | INFO     | zombie collector waiting for pid 3625283
[2026-01-28 05:19:21] 2026-01-28 04:16:32,189 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 05:19:21] 2026-01-28 04:16:32,189 | INFO     | collected zombie processes
[2026-01-28 05:19:21] 2026-01-28 04:16:32,189 | INFO     | will attempt to kill all subprocesses of pid=3625283
[2026-01-28 05:19:21] 2026-01-28 04:16:33,537 | WARNING  | process 3625283 can no longer be monitored (due to stat problems) - aborting
[2026-01-28 05:19:21] 2026-01-28 04:16:34,384 | INFO     | process IDs to be killed: [3625283] (in reverse order)
[2026-01-28 05:19:21] 2026-01-28 04:16:34,642 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 05:19:21] 2026-01-28 04:16:34,643 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 05:19:21] 2026-01-28 04:16:34,756 | INFO     | did not find any defunct processes belonging to 3625283
[2026-01-28 05:19:21] 2026-01-28 04:16:34,867 | INFO     | did not find any defunct processes belonging to 3625283
[2026-01-28 05:19:21] 2026-01-28 04:16:34,867 | INFO     | ready for new job
[2026-01-28 05:19:21] 2026-01-28 04:16:34,868 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 05:19:21] 2026-01-28 04:16:34,870 | INFO     | **************************************
[2026-01-28 05:19:21] 2026-01-28 04:16:34,871 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 05:19:21] 2026-01-28 04:16:34,871 | INFO     | **************************************
[2026-01-28 05:19:21] 2026-01-28 04:16:34,871 | INFO     | 
[2026-01-28 05:19:21] 2026-01-28 04:16:34,882 | INFO     | architecture information:
[2026-01-28 05:19:21] 2026-01-28 04:16:34,883 | INFO     | executing command: cat /etc/os-release
[2026-01-28 05:19:21] 2026-01-28 04:16:34,899 | INFO     | using path: /scratch/boinc/var/slot108/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-28 05:19:21] 2026-01-28 04:16:34,907 | INFO     | cat /etc/os-release:
[2026-01-28 05:19:21] NAME="CentOS Linux"
[2026-01-28 05:19:21] VERSION="7 (Core)"
[2026-01-28 05:19:21] ID="centos"
[2026-01-28 05:19:21] ID_LIKE="rhel fedora"
[2026-01-28 05:19:21] VERSION_ID="7"
[2026-01-28 05:19:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 05:19:21] ANSI_COLOR="0;31"
[2026-01-28 05:19:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 05:19:21] HOME_URL="https://www.centos.org/"
[2026-01-28 05:19:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 05:19:21] 
[2026-01-28 05:19:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 05:19:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 05:19:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 05:19:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 05:19:21] 
[2026-01-28 05:19:21] 2026-01-28 04:16:34,907 | INFO     | **************************************
[2026-01-28 05:19:21] 2026-01-28 04:16:35,411 | INFO     | executing command: df -mP /scratch/boinc/var/slot108/slots/0
[2026-01-28 05:19:21] 2026-01-28 04:16:35,436 | INFO     | sufficient remaining disk space (3309819658240 B)
[2026-01-28 05:19:21] 2026-01-28 04:16:35,437 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 05:19:21] 2026-01-28 04:16:35,437 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 05:19:21] 2026-01-28 04:16:35,437 | INFO     | update_server=False
[2026-01-28 05:19:21] 2026-01-28 04:16:35,437 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 05:19:21] 2026-01-28 04:16:35,438 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 05:19:21] 2026-01-28 04:16:35,713 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 05:19:21] 2026-01-28 04:16:35,732 | INFO     | number of running child processes to parent process 3625283: 1
[2026-01-28 05:19:21] 2026-01-28 04:16:35,733 | INFO     | maximum number of monitored processes: 6
[2026-01-28 05:19:21] 2026-01-28 04:16:35,733 | INFO     | aborting job monitoring since job object (job id=6983449546) has expired
[2026-01-28 05:19:21] 2026-01-28 04:16:35,733 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 05:19:21] 2026-01-28 04:16:35,733 | INFO     | will abort loop
[2026-01-28 05:19:21] 2026-01-28 04:16:35,765 | INFO     | all data control threads have been joined
[2026-01-28 05:19:21] 2026-01-28 04:16:35,960 | INFO     | all payload control threads have been joined
[2026-01-28 05:19:21] 2026-01-28 04:16:36,155 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 05:19:21] 2026-01-28 04:16:36,243 | INFO     | all job control threads have been joined
[2026-01-28 05:19:21] 2026-01-28 04:16:36,441 | INFO     | [job] retrieve thread has finished
[2026-01-28 05:19:21] 2026-01-28 04:16:36,517 | INFO     | [job] validate thread has finished
[2026-01-28 05:19:21] 2026-01-28 04:16:36,715 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 05:19:21] 2026-01-28 04:16:36,738 | INFO     | [job] job monitor thread has finished
[2026-01-28 05:19:21] 2026-01-28 04:16:36,770 | INFO     | [data] control thread has finished
[2026-01-28 05:19:21] 2026-01-28 04:16:36,965 | INFO     | [payload] control thread has finished
[2026-01-28 05:19:21] 2026-01-28 04:16:36,970 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 05:19:21] 2026-01-28 04:16:36,979 | INFO     | [data] copytool_in thread has finished
[2026-01-28 05:19:21] 2026-01-28 04:16:37,160 | INFO     | [job] queue monitor thread has finished
[2026-01-28 05:19:21] 2026-01-28 04:16:37,249 | INFO     | [job] control thread has finished
[2026-01-28 05:19:21] 2026-01-28 04:16:37,443 | INFO     | [data] copytool_out thread has finished
[2026-01-28 05:19:21] 2026-01-28 04:16:37,551 | INFO     | [payload] failed_post thread has finished
[2026-01-28 05:19:21] 2026-01-28 04:16:37,805 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 05:19:21] 2026-01-28 04:16:38,028 | INFO     | [payload] validate_post thread has finished
[2026-01-28 05:19:21] 2026-01-28 04:16:39,719 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 05:19:21] 2026-01-28 04:16:46,305 | INFO     | job.realtimelogging is not enabled
[2026-01-28 05:19:21] 2026-01-28 04:16:47,310 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 05:19:21] 2026-01-28 04:17:03,689 | INFO     | PID=3614640 has CPU usage=17.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-28 05:19:21] 2026-01-28 04:17:03,689 | INFO     | .. there are 9 such processes running
[2026-01-28 05:19:21] 2026-01-28 04:17:03,690 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 05:19:21] 2026-01-28 04:17:03,690 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 05:19:21] 2026-01-28 04:17:03,690 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 05:19:21] 2026-01-28 04:17:22,182 | INFO     | [monitor] cgroup control has ended
[2026-01-28 05:19:21] 2026-01-28 04:17:24,048 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22733114386240)>', '<ExcThread(monitor, started 22732866840320)>']
[2026-01-28 05:19:21] 2026-01-28 04:17:24,781 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 05:19:21] 2026-01-28 04:17:24,781 | INFO     | [monitor] control thread has ended
[2026-01-28 05:19:21] 2026-01-28 04:17:29,073 | INFO     | all workflow threads have been joined
[2026-01-28 05:19:21] 2026-01-28 04:17:29,073 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 05:19:21] 2026-01-28 04:17:29,073 | INFO     | traces error code: 0
[2026-01-28 05:19:21] 2026-01-28 04:17:29,074 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 05:19:21] 2026-01-28 04:17:29,244 [wrapper] ==== pilot stdout END ====
[2026-01-28 05:19:21] 2026-01-28 04:17:29,248 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 05:19:21] 2026-01-28 04:17:29,253 [wrapper] pilotpid: 3614640
[2026-01-28 05:19:21] 2026-01-28 04:17:29,257 [wrapper] Pilot exit status: 0
[2026-01-28 05:19:21] 2026-01-28 04:17:29,275 [wrapper] pandaids: 6983449546
[2026-01-28 05:19:21] 2026-01-28 04:17:29,445 [wrapper] cleanup supervisor_pilot 3869313 3614641
[2026-01-28 05:19:21] 2026-01-28 04:17:29,449 [wrapper] Test setup, not cleaning
[2026-01-28 05:19:21] 2026-01-28 04:17:29,454 [wrapper] apfmon messages muted
[2026-01-28 05:19:21] 2026-01-28 04:17:29,459 [wrapper] ==== wrapper stdout END ====
[2026-01-28 05:19:21] 2026-01-28 04:17:29,463 [wrapper] ==== wrapper stderr END ====
[2026-01-28 05:19:21]  *** Error codes and diagnostics ***
[2026-01-28 05:19:21]     "exeErrorCode": 0,
[2026-01-28 05:19:21]     "exeErrorDiag": "",
[2026-01-28 05:19:21]     "pilotErrorCode": 0,
[2026-01-28 05:19:21]     "pilotErrorDiag": "",
[2026-01-28 05:19:21]  *** Listing of results directory ***
[2026-01-28 05:19:21] total 459452
[2026-01-28 05:19:21] -rw-r--r-- 1 boinc boinc    584422 Jan 25 21:48 pilot3.tar.gz
[2026-01-28 05:19:21] -rwx------ 1 boinc boinc     36322 Jan 25 21:49 runpilot2-wrapper.sh
[2026-01-28 05:19:21] -rw-r--r-- 1 boinc boinc      5111 Jan 25 21:51 queuedata.json
[2026-01-28 05:19:21] -rw-r--r-- 1 boinc boinc       100 Jan 28 01:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 05:19:21] -rwxr-xr-x 1 boinc boinc      7986 Jan 28 01:55 run_atlas
[2026-01-28 05:19:21] -rw-r--r-- 1 boinc boinc       105 Jan 28 01:55 job.xml
[2026-01-28 05:19:21] -rw-r--r-- 1 boinc boinc      6692 Jan 28 01:55 init_data.xml
[2026-01-28 05:19:21] -rw-r--r-- 2 boinc boinc 273131555 Jan 28 01:55 EVNT.48329419._000001.pool.root.1
[2026-01-28 05:19:21] -rw-r--r-- 2 boinc boinc     15845 Jan 28 01:55 start_atlas.sh
[2026-01-28 05:19:21] drwxrwx--x 2 boinc boinc      4096 Jan 28 01:55 shared
[2026-01-28 05:19:21] -rw-r--r-- 2 boinc boinc    597772 Jan 28 01:55 input.tar.gz
[2026-01-28 05:19:21] -rw-r--r-- 1 boinc boinc         0 Jan 28 01:55 boinc_lockfile
[2026-01-28 05:19:21] -rw-r--r-- 1 boinc boinc      2605 Jan 28 01:55 pandaJob.out
[2026-01-28 05:19:21] -rw------- 1 boinc boinc   1005240 Jan 28 01:55 agis_schedconf.cvmfs.json
[2026-01-28 05:19:21] -rw------- 1 boinc boinc       443 Jan 28 01:56 workernode_map.json
[2026-01-28 05:19:21] drwx------ 5 boinc boinc      4096 Jan 28 01:56 pilot3
[2026-01-28 05:19:21] -rw------- 1 boinc boinc 189285512 Jan 28 05:15 HITS.48329421._000023.pool.root.1
[2026-01-28 05:19:21] -rw-r--r-- 1 boinc boinc       528 Jan 28 05:16 boinc_task_state.xml
[2026-01-28 05:19:21] -rw------- 1 boinc boinc      1031 Jan 28 05:16 memory_monitor_summary.json
[2026-01-28 05:19:21] -rw------- 1 boinc boinc   1516246 Jan 28 05:16 agis_ddmendpoints.agis.ALL.json
[2026-01-28 05:19:21] -rw------- 1 boinc boinc    384363 Jan 28 05:16 log.48329421._000023.job.log.tgz.1
[2026-01-28 05:19:21] -rw------- 1 boinc boinc      6346 Jan 28 05:16 heartbeat.json
[2026-01-28 05:19:21] -rw------- 1 boinc boinc        95 Jan 28 05:17 pilot_heartbeat.json
[2026-01-28 05:19:21] -rw------- 1 boinc boinc      5323 Jan 28 05:17 pilotlog.txt
[2026-01-28 05:19:21] -rw------- 1 boinc boinc   1672686 Jan 28 05:17 log.48329421._000023.job.log.1
[2026-01-28 05:19:21] -rw------- 1 boinc boinc       357 Jan 28 05:17 output.list
[2026-01-28 05:19:21] -rw-r--r-- 1 boinc boinc       620 Jan 28 05:17 runtime_log
[2026-01-28 05:19:21] -rw------- 1 boinc boinc   2078720 Jan 28 05:17 result.tar.gz
[2026-01-28 05:19:21] -rw-r--r-- 1 boinc boinc      9222 Jan 28 05:17 runtime_log.err
[2026-01-28 05:19:21] -rw------- 1 boinc boinc       666 Jan 28 05:17 luEMDmKEM48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmfn1KDmZX63hn.diag
[2026-01-28 05:19:21] -rw-r--r-- 1 boinc boinc      8192 Jan 28 05:19 boinc_mmap_file
[2026-01-28 05:19:21] -rw-r--r-- 1 boinc boinc        26 Jan 28 05:19 wrapper_checkpoint.txt
[2026-01-28 05:19:21] -rw-r--r-- 1 boinc boinc     21131 Jan 28 05:19 stderr.txt
[2026-01-28 05:19:21] HITS file was successfully produced:
[2026-01-28 05:19:21] -rw------- 1 boinc boinc 189285512 Jan 28 05:15 shared/HITS.pool.root.1
[2026-01-28 05:19:21]  *** Contents of shared directory: ***
[2026-01-28 05:19:21] total 454224
[2026-01-28 05:19:21] -rw-r--r-- 2 boinc boinc 273131555 Jan 28 01:55 ATLAS.root_0
[2026-01-28 05:19:21] -rw-r--r-- 2 boinc boinc     15845 Jan 28 01:55 start_atlas.sh
[2026-01-28 05:19:21] -rw-r--r-- 2 boinc boinc    597772 Jan 28 01:55 input.tar.gz
[2026-01-28 05:19:21] -rw------- 1 boinc boinc 189285512 Jan 28 05:15 HITS.pool.root.1
[2026-01-28 05:19:21] -rw------- 1 boinc boinc   2078720 Jan 28 05:17 result.tar.gz
05:19:22 (3607444): run_atlas exited; CPU time 46952.316212
05:19:22 (3607444): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN