Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:22:55 (1199936): wrapper (7.7.26015): starting
18:22:55 (1199936): wrapper: running run_atlas (--nthreads 4)
[2026-01-26 18:22:55] Arguments: --nthreads 4
[2026-01-26 18:22:55] Threads: 4
[2026-01-26 18:22:55] Checking for CVMFS
[2026-01-26 18:22:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 18:22:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 18:22:56] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 18:22:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 18:22:56] 2.9.2.0 3657875 8675 106520 155555 3 49 22200487 36864001 0 130560 0 4907959 99.990 280559 5863 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 18:22:56] CVMFS is ok
[2026-01-26 18:22:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 18:22:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 18:22:56] Further information can be found at the LHC@home message board.
[2026-01-26 18:22:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 18:22:56] Checking for apptainer binary...
[2026-01-26 18:22:56] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 18:22:56] Running /usr/bin/apptainer --version
[2026-01-26 18:22:56] apptainer version 1.4.1-1.1
[2026-01-26 18:22:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 18:22:56] magicA244a
[2026-01-26 18:22:56] apptainer works
[2026-01-26 18:22:56] Set ATHENA_PROC_NUMBER=4
[2026-01-26 18:22:56] Set ATHENA_CORE_NUMBER=4
[2026-01-26 18:22:56] Starting ATLAS job with PandaID=6983602240
[2026-01-26 18:22:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 19:57:19]  *** The last 200 lines of the pilot log: ***
[2026-01-26 19:57:19] 2026-01-26 18:56:36,438 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-01-26 19:57:19] 2026-01-26 18:56:36,452 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 19:57:19] 2026-01-26 18:56:36,452 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 19:57:19] 2026-01-26 18:56:36,452 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 19:57:19] 2026-01-26 18:56:36,452 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 19:57:19] 2026-01-26 18:56:36,452 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 19:57:19] 2026-01-26 18:56:36,452 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 19:57:19] 2026-01-26 18:56:36,452 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 19:57:19] 2026-01-26 18:56:36,452 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 19:57:19] 2026-01-26 18:56:36,452 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 19:57:19] 2026-01-26 18:56:36,452 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 19:57:19] 2026-01-26 18:56:36,452 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 19:57:19] 2026-01-26 18:56:36,452 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 19:57:19] 2026-01-26 18:56:36,452 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 19:57:19] 2026-01-26 18:56:36,452 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 19:57:19] 2026-01-26 18:56:36,452 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 19:57:19] 2026-01-26 18:56:36,452 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 19:57:19] 2026-01-26 18:56:36,452 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 19:57:19] 2026-01-26 18:56:36,452 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 19:57:19] 2026-01-26 18:56:36,452 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 19:57:19] 2026-01-26 18:56:36,452 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 19:57:19] 2026-01-26 18:56:36,452 | INFO     | job 6983602240 has completed (purged errors)
[2026-01-26 19:57:19] 2026-01-26 18:56:36,452 | INFO     | overall cleanup function is called
[2026-01-26 19:57:19] 2026-01-26 18:56:37,459 | INFO     | --- collectZombieJob: --- 10, [1208557]
[2026-01-26 19:57:19] 2026-01-26 18:56:37,459 | INFO     | zombie collector waiting for pid 1208557
[2026-01-26 19:57:19] 2026-01-26 18:56:37,459 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 19:57:19] 2026-01-26 18:56:37,459 | INFO     | collected zombie processes
[2026-01-26 19:57:19] 2026-01-26 18:56:37,459 | INFO     | will attempt to kill all subprocesses of pid=1208557
[2026-01-26 19:57:19] 2026-01-26 18:56:37,503 | INFO     | process IDs to be killed: [1208557] (in reverse order)
[2026-01-26 19:57:19] 2026-01-26 18:56:37,530 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 19:57:19] 2026-01-26 18:56:37,530 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 19:57:19] 2026-01-26 18:56:37,531 | INFO     | did not find any defunct processes belonging to 1208557
[2026-01-26 19:57:19] 2026-01-26 18:56:37,532 | INFO     | did not find any defunct processes belonging to 1208557
[2026-01-26 19:57:19] 2026-01-26 18:56:37,532 | INFO     | ready for new job
[2026-01-26 19:57:19] 2026-01-26 18:56:37,532 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 19:57:19] 2026-01-26 18:56:37,533 | INFO     | **************************************
[2026-01-26 19:57:19] 2026-01-26 18:56:37,533 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 19:57:19] 2026-01-26 18:56:37,533 | INFO     | **************************************
[2026-01-26 19:57:19] 2026-01-26 18:56:37,533 | INFO     | 
[2026-01-26 19:57:19] 2026-01-26 18:56:37,533 | INFO     | architecture information:
[2026-01-26 19:57:19] 2026-01-26 18:56:37,534 | INFO     | executing command: cat /etc/os-release
[2026-01-26 19:57:19] 2026-01-26 18:56:37,543 | INFO     | cat /etc/os-release:
[2026-01-26 19:57:19] NAME="CentOS Linux"
[2026-01-26 19:57:19] VERSION="7 (Core)"
[2026-01-26 19:57:19] ID="centos"
[2026-01-26 19:57:19] ID_LIKE="rhel fedora"
[2026-01-26 19:57:19] VERSION_ID="7"
[2026-01-26 19:57:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 19:57:19] ANSI_COLOR="0;31"
[2026-01-26 19:57:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 19:57:19] HOME_URL="https://www.centos.org/"
[2026-01-26 19:57:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 19:57:19] 
[2026-01-26 19:57:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 19:57:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 19:57:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 19:57:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 19:57:19] 
[2026-01-26 19:57:19] 2026-01-26 18:56:37,543 | INFO     | **************************************
[2026-01-26 19:57:19] 2026-01-26 18:56:38,046 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 19:57:19] 2026-01-26 18:56:38,060 | INFO     | sufficient remaining disk space (334382497792 B)
[2026-01-26 19:57:19] 2026-01-26 18:56:38,060 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 19:57:19] 2026-01-26 18:56:38,061 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 19:57:19] 2026-01-26 18:56:38,061 | INFO     | update_server=False
[2026-01-26 19:57:19] 2026-01-26 18:56:38,061 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 19:57:19] 2026-01-26 18:56:38,061 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 19:57:19] 2026-01-26 18:56:38,061 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 19:57:19] 2026-01-26 18:56:38,061 | INFO     | aborting loop
[2026-01-26 19:57:19] 2026-01-26 18:56:38,061 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-26 19:57:19] 2026-01-26 18:56:38,061 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 19:57:19] 2026-01-26 18:56:38,061 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 19:57:19] 2026-01-26 18:56:38,061 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 19:57:19] 2026-01-26 18:56:38,061 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 19:57:19] 2026-01-26 18:56:38,288 | INFO     | all data control threads have been joined
[2026-01-26 19:57:19] 2026-01-26 18:56:38,691 | INFO     | all payload control threads have been joined
[2026-01-26 19:57:19] 2026-01-26 18:56:38,907 | INFO     | all job control threads have been joined
[2026-01-26 19:57:19] 2026-01-26 18:56:39,066 | INFO     | [job] retrieve thread has finished
[2026-01-26 19:57:19] 2026-01-26 18:56:39,066 | INFO     | [job] queue monitor thread has finished
[2026-01-26 19:57:19] 2026-01-26 18:56:39,066 | INFO     | [job] job monitor thread has finished
[2026-01-26 19:57:19] 2026-01-26 18:56:39,294 | INFO     | [data] control thread has finished
[2026-01-26 19:57:19] 2026-01-26 18:56:39,697 | INFO     | [payload] control thread has finished
[2026-01-26 19:57:19] 2026-01-26 18:56:39,913 | INFO     | [job] control thread has finished
[2026-01-26 19:57:19] 2026-01-26 18:56:39,940 | INFO     | [payload] failed_post thread has finished
[2026-01-26 19:57:19] 2026-01-26 18:56:40,057 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 19:57:19] 2026-01-26 18:56:40,067 | INFO     | [data] copytool_out thread has finished
[2026-01-26 19:57:19] 2026-01-26 18:56:40,207 | INFO     | [job] validate thread has finished
[2026-01-26 19:57:19] 2026-01-26 18:56:40,272 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 19:57:19] 2026-01-26 18:56:40,383 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 19:57:19] 2026-01-26 18:56:40,454 | INFO     | [data] copytool_in thread has finished
[2026-01-26 19:57:19] 2026-01-26 18:56:40,582 | INFO     | [payload] validate_post thread has finished
[2026-01-26 19:57:19] 2026-01-26 18:56:41,073 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 19:57:19] 2026-01-26 18:56:45,080 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 19:57:19] 2026-01-26 18:56:48,264 | INFO     | job.realtimelogging is not enabled
[2026-01-26 19:57:19] 2026-01-26 18:56:49,269 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 19:57:19] 2026-01-26 18:57:13,168 | INFO     | [monitor] cgroup control has ended
[2026-01-26 19:57:19] 2026-01-26 18:57:14,173 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140457290618688)>', '<ExcThread(monitor, started 140456369321728)>']
[2026-01-26 19:57:19] 2026-01-26 18:57:14,243 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 19:57:19] 2026-01-26 18:57:14,243 | INFO     | [monitor] control thread has ended
[2026-01-26 19:57:19] 2026-01-26 18:57:19,199 | INFO     | all workflow threads have been joined
[2026-01-26 19:57:19] 2026-01-26 18:57:19,199 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 19:57:19] 2026-01-26 18:57:19,199 | INFO     | traces error code: 0
[2026-01-26 19:57:19] 2026-01-26 18:57:19,199 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 19:57:19] 2026-01-26 18:57:19,254 [wrapper] ==== pilot stdout END ====
[2026-01-26 19:57:19] 2026-01-26 18:57:19,256 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 19:57:19] 2026-01-26 18:57:19,259 [wrapper] pilotpid: 1204054
[2026-01-26 19:57:19] 2026-01-26 18:57:19,261 [wrapper] Pilot exit status: 0
[2026-01-26 19:57:19] 2026-01-26 18:57:19,269 [wrapper] pandaids: 6983602240
[2026-01-26 19:57:19] 2026-01-26 18:57:19,287 [wrapper] cleanup supervisor_pilot 1213887 1204055
[2026-01-26 19:57:19] 2026-01-26 18:57:19,289 [wrapper] Test setup, not cleaning
[2026-01-26 19:57:19] 2026-01-26 18:57:19,292 [wrapper] apfmon messages muted
[2026-01-26 19:57:19] 2026-01-26 18:57:19,294 [wrapper] ==== wrapper stdout END ====
[2026-01-26 19:57:19] 2026-01-26 18:57:19,297 [wrapper] ==== wrapper stderr END ====
[2026-01-26 19:57:19]  *** Error codes and diagnostics ***
[2026-01-26 19:57:19]     "exeErrorCode": 0,
[2026-01-26 19:57:19]     "exeErrorDiag": "",
[2026-01-26 19:57:19]     "pilotErrorCode": 0,
[2026-01-26 19:57:19]     "pilotErrorDiag": "",
[2026-01-26 19:57:19]  *** Listing of results directory ***
[2026-01-26 19:57:19] total 461744
[2026-01-26 19:57:19] -rw-r--r-- 1 boinc boinc    584422 Jan 26 02:12 pilot3.tar.gz
[2026-01-26 19:57:19] -rwx------ 1 boinc boinc     36322 Jan 26 02:15 runpilot2-wrapper.sh
[2026-01-26 19:57:19] -rw-r--r-- 1 boinc boinc      5111 Jan 26 02:18 queuedata.json
[2026-01-26 19:57:19] -rw-r--r-- 1 boinc boinc       100 Jan 26 18:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 19:57:19] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 18:22 run_atlas
[2026-01-26 19:57:19] -rw-r--r-- 1 boinc boinc       105 Jan 26 18:22 job.xml
[2026-01-26 19:57:19] -rw-r--r-- 2 boinc boinc 271520435 Jan 26 18:22 EVNT.48329596._000003.pool.root.1
[2026-01-26 19:57:19] -rw-r--r-- 2 boinc boinc    597776 Jan 26 18:22 input.tar.gz
[2026-01-26 19:57:19] -rw-r--r-- 2 boinc boinc     15845 Jan 26 18:22 start_atlas.sh
[2026-01-26 19:57:19] drwxrwx--x 2 boinc boinc      4096 Jan 26 18:22 shared
[2026-01-26 19:57:19] -rw-r--r-- 1 boinc boinc         0 Jan 26 18:22 boinc_setup_complete
[2026-01-26 19:57:19] -rw-r--r-- 1 boinc boinc      6438 Jan 26 18:22 init_data.xml
[2026-01-26 19:57:19] -rw-r--r-- 1 boinc boinc         0 Jan 26 18:22 boinc_lockfile
[2026-01-26 19:57:19] -rw-r--r-- 1 boinc boinc      2605 Jan 26 18:22 pandaJob.out
[2026-01-26 19:57:19] -rw------- 1 boinc boinc   1006384 Jan 26 18:23 agis_schedconf.cvmfs.json
[2026-01-26 19:57:19] -rw------- 1 boinc boinc   1516246 Jan 26 18:23 agis_ddmendpoints.agis.ALL.json
[2026-01-26 19:57:19] -rw------- 1 boinc boinc       421 Jan 26 18:23 workernode_map.json
[2026-01-26 19:57:19] drwx------ 5 boinc boinc      4096 Jan 26 18:23 pilot3
[2026-01-26 19:57:19] -rw------- 1 boinc boinc 195195034 Jan 26 19:56 HITS.48329598._000055.pool.root.1
[2026-01-26 19:57:19] -rw-r--r-- 1 boinc boinc       529 Jan 26 19:56 boinc_task_state.xml
[2026-01-26 19:57:19] -rw------- 1 boinc boinc      1033 Jan 26 19:56 memory_monitor_summary.json
[2026-01-26 19:57:19] -rw------- 1 boinc boinc    267616 Jan 26 19:56 log.48329598._000055.job.log.tgz.1
[2026-01-26 19:57:19] -rw------- 1 boinc boinc        95 Jan 26 19:56 pilot_heartbeat.json
[2026-01-26 19:57:19] -rw------- 1 boinc boinc      6293 Jan 26 19:56 heartbeat.json
[2026-01-26 19:57:19] -rw-r--r-- 1 boinc boinc      8192 Jan 26 19:56 boinc_mmap_file
[2026-01-26 19:57:19] -rw-r--r-- 1 boinc boinc        27 Jan 26 19:56 wrapper_checkpoint.txt
[2026-01-26 19:57:19] -rw------- 1 boinc boinc      4624 Jan 26 19:57 pilotlog.txt
[2026-01-26 19:57:19] -rw------- 1 boinc boinc    817151 Jan 26 19:57 log.48329598._000055.job.log.1
[2026-01-26 19:57:19] -rw------- 1 boinc boinc       357 Jan 26 19:57 output.list
[2026-01-26 19:57:19] -rw-r--r-- 1 boinc boinc       620 Jan 26 19:57 runtime_log
[2026-01-26 19:57:19] -rw------- 1 boinc boinc   1105920 Jan 26 19:57 result.tar.gz
[2026-01-26 19:57:19] -rw-r--r-- 1 boinc boinc      8916 Jan 26 19:57 runtime_log.err
[2026-01-26 19:57:19] -rw------- 1 boinc boinc       661 Jan 26 19:57 IebLDmONQ48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmap8KDmP8nyum.diag
[2026-01-26 19:57:19] -rw-r--r-- 1 boinc boinc     12959 Jan 26 19:57 stderr.txt
[2026-01-26 19:57:19] HITS file was successfully produced:
[2026-01-26 19:57:19] -rw------- 1 boinc boinc 195195034 Jan 26 19:56 shared/HITS.pool.root.1
[2026-01-26 19:57:19]  *** Contents of shared directory: ***
[2026-01-26 19:57:19] total 457472
[2026-01-26 19:57:19] -rw-r--r-- 2 boinc boinc 271520435 Jan 26 18:22 ATLAS.root_0
[2026-01-26 19:57:19] -rw-r--r-- 2 boinc boinc    597776 Jan 26 18:22 input.tar.gz
[2026-01-26 19:57:19] -rw-r--r-- 2 boinc boinc     15845 Jan 26 18:22 start_atlas.sh
[2026-01-26 19:57:19] -rw------- 1 boinc boinc 195195034 Jan 26 19:56 HITS.pool.root.1
[2026-01-26 19:57:19] -rw------- 1 boinc boinc   1105920 Jan 26 19:57 result.tar.gz
19:57:20 (1199936): run_atlas exited; CPU time 21360.675453
19:57:20 (1199936): called boinc_finish(0)

</stderr_txt>
]]>

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