Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:19:43 (759231): wrapper (7.7.26015): starting
11:19:43 (759231): wrapper: running run_atlas (--nthreads 4)
[2026-01-26 11:19:43] Arguments: --nthreads 4
[2026-01-26 11:19:43] Threads: 4
[2026-01-26 11:19:43] Checking for CVMFS
[2026-01-26 11:19:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 11:19:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 11:19:44] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 11:19:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 11:19:44] 2.9.2.0 3075 3679 95232 155543 2 50 22669363 36864001 0 130560 0 2134482 99.989 137301 4535 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 11:19:44] CVMFS is ok
[2026-01-26 11:19:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 11:19:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 11:19:44] Further information can be found at the LHC@home message board.
[2026-01-26 11:19:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 11:19:44] Checking for apptainer binary...
[2026-01-26 11:19:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 11:19:44] Running /usr/bin/apptainer --version
[2026-01-26 11:19:44] apptainer version 1.4.1-1.1
[2026-01-26 11:19:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 11:19:44] thA383a
[2026-01-26 11:19:44] apptainer works
[2026-01-26 11:19:44] Set ATHENA_PROC_NUMBER=4
[2026-01-26 11:19:44] Set ATHENA_CORE_NUMBER=4
[2026-01-26 11:19:44] Starting ATLAS job with PandaID=6983771347
[2026-01-26 11:19:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 12:46:09]  *** The last 200 lines of the pilot log: ***
[2026-01-26 12:46:09] 2026-01-26 11:45:07,459 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 12:46:09] 2026-01-26 11:45:07,459 | INFO     | collected zombie processes
[2026-01-26 12:46:09] 2026-01-26 11:45:07,459 | INFO     | will attempt to kill all subprocesses of pid=767846
[2026-01-26 12:46:09] 2026-01-26 11:45:07,501 | INFO     | process IDs to be killed: [767846] (in reverse order)
[2026-01-26 12:46:09] 2026-01-26 11:45:07,535 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 12:46:09] 2026-01-26 11:45:07,535 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 12:46:09] 2026-01-26 11:45:07,536 | INFO     | did not find any defunct processes belonging to 767846
[2026-01-26 12:46:09] 2026-01-26 11:45:07,538 | INFO     | did not find any defunct processes belonging to 767846
[2026-01-26 12:46:09] 2026-01-26 11:45:07,538 | INFO     | ready for new job
[2026-01-26 12:46:09] 2026-01-26 11:45:07,538 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 12:46:09] 2026-01-26 11:45:07,538 | INFO     | **************************************
[2026-01-26 12:46:09] 2026-01-26 11:45:07,538 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 12:46:09] 2026-01-26 11:45:07,538 | INFO     | **************************************
[2026-01-26 12:46:09] 2026-01-26 11:45:07,539 | INFO     | 
[2026-01-26 12:46:09] 2026-01-26 11:45:07,539 | INFO     | architecture information:
[2026-01-26 12:46:09] 2026-01-26 11:45:07,539 | INFO     | executing command: cat /etc/os-release
[2026-01-26 12:46:09] 2026-01-26 11:45:07,553 | INFO     | cat /etc/os-release:
[2026-01-26 12:46:09] NAME="CentOS Linux"
[2026-01-26 12:46:09] VERSION="7 (Core)"
[2026-01-26 12:46:09] ID="centos"
[2026-01-26 12:46:09] ID_LIKE="rhel fedora"
[2026-01-26 12:46:09] VERSION_ID="7"
[2026-01-26 12:46:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 12:46:09] ANSI_COLOR="0;31"
[2026-01-26 12:46:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 12:46:09] HOME_URL="https://www.centos.org/"
[2026-01-26 12:46:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 12:46:09] 
[2026-01-26 12:46:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 12:46:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 12:46:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 12:46:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 12:46:09] 
[2026-01-26 12:46:09] 2026-01-26 11:45:07,554 | INFO     | **************************************
[2026-01-26 12:46:09] 2026-01-26 11:45:08,057 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 12:46:09] 2026-01-26 11:45:08,074 | INFO     | sufficient remaining disk space (236682477568 B)
[2026-01-26 12:46:09] 2026-01-26 11:45:08,075 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 12:46:09] 2026-01-26 11:45:08,075 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 12:46:09] 2026-01-26 11:45:08,075 | INFO     | update_server=False
[2026-01-26 12:46:09] 2026-01-26 11:45:08,075 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 12:46:09] 2026-01-26 11:45:08,075 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 12:46:09] 2026-01-26 11:45:08,075 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 12:46:09] 2026-01-26 11:45:08,150 | INFO     | all data control threads have been joined
[2026-01-26 12:46:09] 2026-01-26 11:45:08,546 | INFO     | all job control threads have been joined
[2026-01-26 12:46:09] 2026-01-26 11:45:08,693 | INFO     | all payload control threads have been joined
[2026-01-26 12:46:09] 2026-01-26 11:45:08,860 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 12:46:09] 2026-01-26 11:45:08,860 | INFO     | aborting loop
[2026-01-26 12:46:09] 2026-01-26 11:45:09,079 | INFO     | [job] retrieve thread has finished
[2026-01-26 12:46:09] 2026-01-26 11:45:09,080 | INFO     | [job] queue monitor thread has finished
[2026-01-26 12:46:09] 2026-01-26 11:45:09,155 | INFO     | [data] control thread has finished
[2026-01-26 12:46:09] 2026-01-26 11:45:09,289 | INFO     | [payload] validate_post thread has finished
[2026-01-26 12:46:09] 2026-01-26 11:45:09,365 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 12:46:09] 2026-01-26 11:45:09,506 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 12:46:09] 2026-01-26 11:45:09,552 | INFO     | [job] control thread has finished
[2026-01-26 12:46:09] 2026-01-26 11:45:09,699 | INFO     | [payload] control thread has finished
[2026-01-26 12:46:09] 2026-01-26 11:45:09,866 | INFO     | [job] job monitor thread has finished
[2026-01-26 12:46:09] 2026-01-26 11:45:09,949 | INFO     | [job] validate thread has finished
[2026-01-26 12:46:09] 2026-01-26 11:45:10,205 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 12:46:09] 2026-01-26 11:45:10,348 | INFO     | [payload] failed_post thread has finished
[2026-01-26 12:46:09] 2026-01-26 11:45:10,425 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 12:46:09] 2026-01-26 11:45:10,532 | INFO     | [data] copytool_in thread has finished
[2026-01-26 12:46:09] 2026-01-26 11:45:10,547 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 12:46:09] 2026-01-26 11:45:11,371 | INFO     | [data] copytool_out thread has finished
[2026-01-26 12:46:09] 2026-01-26 11:45:12,082 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 12:46:09] 2026-01-26 11:45:37,654 | INFO     | PID=763333 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-26 12:46:09] 2026-01-26 11:45:37,655 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 12:46:09] 2026-01-26 11:45:37,655 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 12:46:09] 2026-01-26 11:45:37,655 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 12:46:09] 2026-01-26 11:46:02,653 | INFO     | [monitor] cgroup control has ended
[2026-01-26 12:46:09] 2026-01-26 11:46:03,910 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140106740709184)>', '<ExcThread(monitor, started 140105490609920)>']
[2026-01-26 12:46:09] 2026-01-26 11:46:04,794 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 12:46:09] 2026-01-26 11:46:04,794 | INFO     | [monitor] control thread has ended
[2026-01-26 12:46:09] 2026-01-26 11:46:08,936 | INFO     | all workflow threads have been joined
[2026-01-26 12:46:09] 2026-01-26 11:46:08,937 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 12:46:09] 2026-01-26 11:46:08,937 | INFO     | traces error code: 0
[2026-01-26 12:46:09] 2026-01-26 11:46:08,937 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 12:46:09] 2026-01-26 11:46:09,017 [wrapper] ==== pilot stdout END ====
[2026-01-26 12:46:09] 2026-01-26 11:46:09,020 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 12:46:09] 2026-01-26 11:46:09,025 [wrapper] pilotpid: 763333
[2026-01-26 12:46:09] 2026-01-26 11:46:09,029 [wrapper] Pilot exit status: 0
[2026-01-26 12:46:09] 2026-01-26 11:46:09,040 [wrapper] pandaids: 6983771347
[2026-01-26 12:46:09] 2026-01-26 11:46:09,064 [wrapper] cleanup supervisor_pilot  773448 763334
[2026-01-26 12:46:09] 2026-01-26 11:46:09,067 [wrapper] Test setup, not cleaning
[2026-01-26 12:46:09] 2026-01-26 11:46:09,071 [wrapper] apfmon messages muted
[2026-01-26 12:46:09] 2026-01-26 11:46:09,075 [wrapper] ==== wrapper stdout END ====
[2026-01-26 12:46:09] 2026-01-26 11:46:09,079 [wrapper] ==== wrapper stderr END ====
[2026-01-26 12:46:09]  *** Error codes and diagnostics ***
[2026-01-26 12:46:09]     "exeErrorCode": 0,
[2026-01-26 12:46:09]     "exeErrorDiag": "",
[2026-01-26 12:46:09]     "pilotErrorCode": 0,
[2026-01-26 12:46:09]     "pilotErrorDiag": "",
[2026-01-26 12:46:09]  *** Listing of results directory ***
[2026-01-26 12:46:09] total 417172
[2026-01-26 12:46:09] -rw-r--r-- 1 boinc boinc    584422 Jan 26 02:12 pilot3.tar.gz
[2026-01-26 12:46:09] -rwx------ 1 boinc boinc     36322 Jan 26 02:15 runpilot2-wrapper.sh
[2026-01-26 12:46:09] -rw-r--r-- 1 boinc boinc      5111 Jan 26 02:18 queuedata.json
[2026-01-26 12:46:09] -rw-r--r-- 1 boinc boinc       100 Jan 26 11:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 12:46:09] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 11:19 run_atlas
[2026-01-26 12:46:09] -rw-r--r-- 1 boinc boinc       105 Jan 26 11:19 job.xml
[2026-01-26 12:46:09] -rw-r--r-- 2 boinc boinc 251528517 Jan 26 11:19 EVNT.48298565._000022.pool.root.1
[2026-01-26 12:46:09] -rw-r--r-- 2 boinc boinc    597775 Jan 26 11:19 input.tar.gz
[2026-01-26 12:46:09] -rw-r--r-- 2 boinc boinc     15845 Jan 26 11:19 start_atlas.sh
[2026-01-26 12:46:09] drwxrwx--x 2 boinc boinc      4096 Jan 26 11:19 shared
[2026-01-26 12:46:09] -rw-r--r-- 1 boinc boinc         0 Jan 26 11:19 boinc_setup_complete
[2026-01-26 12:46:09] -rw-r--r-- 1 boinc boinc      6377 Jan 26 11:19 init_data.xml
[2026-01-26 12:46:09] -rw-r--r-- 1 boinc boinc         0 Jan 26 11:19 boinc_lockfile
[2026-01-26 12:46:09] -rw-r--r-- 1 boinc boinc      2614 Jan 26 11:19 pandaJob.out
[2026-01-26 12:46:09] -rw------- 1 boinc boinc   1004246 Jan 26 11:19 agis_schedconf.cvmfs.json
[2026-01-26 12:46:09] -rw------- 1 boinc boinc   1516246 Jan 26 11:19 agis_ddmendpoints.agis.ALL.json
[2026-01-26 12:46:09] -rw------- 1 boinc boinc       422 Jan 26 11:19 workernode_map.json
[2026-01-26 12:46:09] drwx------ 5 boinc boinc      4096 Jan 26 11:19 pilot3
[2026-01-26 12:46:09] -rw------- 1 boinc boinc 169675002 Jan 26 12:44 HITS.48298567._000544.pool.root.1
[2026-01-26 12:46:09] -rw-r--r-- 1 boinc boinc       529 Jan 26 12:44 boinc_task_state.xml
[2026-01-26 12:46:09] -rw------- 1 boinc boinc      1040 Jan 26 12:45 memory_monitor_summary.json
[2026-01-26 12:46:09] -rw------- 1 boinc boinc    277603 Jan 26 12:45 log.48298567._000544.job.log.tgz.1
[2026-01-26 12:46:09] -rw------- 1 boinc boinc      6312 Jan 26 12:45 heartbeat.json
[2026-01-26 12:46:09] -rw------- 1 boinc boinc        95 Jan 26 12:45 pilot_heartbeat.json
[2026-01-26 12:46:09] -rw-r--r-- 1 boinc boinc        27 Jan 26 12:45 wrapper_checkpoint.txt
[2026-01-26 12:46:09] -rw-r--r-- 1 boinc boinc      8192 Jan 26 12:45 boinc_mmap_file
[2026-01-26 12:46:09] -rw------- 1 boinc boinc      4747 Jan 26 12:46 pilotlog.txt
[2026-01-26 12:46:09] -rw------- 1 boinc boinc    745595 Jan 26 12:46 log.48298567._000544.job.log.1
[2026-01-26 12:46:09] -rw------- 1 boinc boinc       357 Jan 26 12:46 output.list
[2026-01-26 12:46:09] -rw-r--r-- 1 boinc boinc       620 Jan 26 12:46 runtime_log
[2026-01-26 12:46:09] -rw------- 1 boinc boinc   1044480 Jan 26 12:46 result.tar.gz
[2026-01-26 12:46:09] -rw-r--r-- 1 boinc boinc      8901 Jan 26 12:46 runtime_log.err
[2026-01-26 12:46:09] -rw------- 1 boinc boinc       658 Jan 26 12:46 BnwLDmDNQ48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLn8KDm4yoeUo.diag
[2026-01-26 12:46:09] -rw-r--r-- 1 boinc boinc     10401 Jan 26 12:46 stderr.txt
[2026-01-26 12:46:09] HITS file was successfully produced:
[2026-01-26 12:46:09] -rw------- 1 boinc boinc 169675002 Jan 26 12:44 shared/HITS.pool.root.1
[2026-01-26 12:46:09]  *** Contents of shared directory: ***
[2026-01-26 12:46:09] total 412964
[2026-01-26 12:46:09] -rw-r--r-- 2 boinc boinc 251528517 Jan 26 11:19 ATLAS.root_0
[2026-01-26 12:46:09] -rw-r--r-- 2 boinc boinc    597775 Jan 26 11:19 input.tar.gz
[2026-01-26 12:46:09] -rw-r--r-- 2 boinc boinc     15845 Jan 26 11:19 start_atlas.sh
[2026-01-26 12:46:09] -rw------- 1 boinc boinc 169675002 Jan 26 12:44 HITS.pool.root.1
[2026-01-26 12:46:09] -rw------- 1 boinc boinc   1044480 Jan 26 12:46 result.tar.gz
12:46:10 (759231): run_atlas exited; CPU time 19227.545673
12:46:10 (759231): called boinc_finish(0)

</stderr_txt>
]]>

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