Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:19:27 (3547446): wrapper (7.7.26015): starting
00:19:27 (3547446): wrapper: running run_atlas (--nthreads 8)
[2026-01-26 00:19:27] Arguments: --nthreads 8
[2026-01-26 00:19:27] Threads: 8
[2026-01-26 00:19:27] Checking for CVMFS
[2026-01-26 00:19:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 00:19:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 00:19:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 00:19:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 00:19:31] 2.13.3.0 9292 46221 437180 155534 3 19 29628614 39288832 8919 16776704 0 57213820 99.531 105714952 34678 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-26 00:19:31] CVMFS is ok
[2026-01-26 00:19:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 00:19:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 00:19:31] Further information can be found at the LHC@home message board.
[2026-01-26 00:19:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 00:19:31] Checking for apptainer binary...
[2026-01-26 00:19:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 00:19:31] Running /usr/bin/apptainer --version
[2026-01-26 00:19:32] apptainer version 1.4.5-2.el9
[2026-01-26 00:19:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 00:19:33] c-211-23.aglt2.org
[2026-01-26 00:19:33] apptainer works
[2026-01-26 00:19:33] Set ATHENA_PROC_NUMBER=8
[2026-01-26 00:19:33] Set ATHENA_CORE_NUMBER=8
[2026-01-26 00:19:33] Starting ATLAS job with PandaID=6983602271
[2026-01-26 00:19:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:09 (3547446): BOINC client no longer exists - exiting
00:20:09 (3547446): timer handler: client dead, exiting
00:32:21 (3680429): wrapper (7.7.26015): starting
00:32:21 (3680429): wrapper: running run_atlas (--nthreads 8)
[2026-01-26 00:32:21] Arguments: --nthreads 8
[2026-01-26 00:32:21] Threads: 8
[2026-01-26 00:32:21] This job has been restarted, cleaning up previous attempt
[2026-01-26 00:32:21] Checking for CVMFS
[2026-01-26 00:32:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 00:32:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 00:32:22] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 00:32:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 00:32:23] 2.13.3.0 9292 46234 437312 155534 2 196 29648594 39288833 6294 16776704 0 57261979 99.531 105714956 34678 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-26 00:32:23] CVMFS is ok
[2026-01-26 00:32:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 00:32:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 00:32:23] Further information can be found at the LHC@home message board.
[2026-01-26 00:32:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 00:32:23] Checking for apptainer binary...
[2026-01-26 00:32:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 00:32:23] Running /usr/bin/apptainer --version
[2026-01-26 00:32:23] apptainer version 1.4.5-2.el9
[2026-01-26 00:32:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 00:32:23] c-211-23.aglt2.org
[2026-01-26 00:32:23] apptainer works
[2026-01-26 00:32:23] Set ATHENA_PROC_NUMBER=8
[2026-01-26 00:32:23] Set ATHENA_CORE_NUMBER=8
[2026-01-26 00:32:23] Starting ATLAS job with PandaID=6983602271
[2026-01-26 00:32:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 16:46:41]  *** The last 200 lines of the pilot log: ***
[2026-01-26 16:46:41] 2026-01-26 21:45:38,292 | INFO     | total number of processed events: 400 (read)
[2026-01-26 16:46:41] 2026-01-26 21:45:38,395 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6983602271/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 16:46:41] 2026-01-26 21:45:38,396 | INFO     | extracted standard info from prmon json
[2026-01-26 16:46:41] 2026-01-26 21:45:38,396 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 16:46:41] 2026-01-26 21:45:38,414 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 16:46:41] 2026-01-26 21:45:38,414 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 16:46:41] 2026-01-26 21:45:38,414 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 16:46:41] 2026-01-26 21:45:38,446 | INFO     | fitting pss+swap vs Time
[2026-01-26 16:46:41] 2026-01-26 21:45:38,448 | INFO     | sum of square deviations: 271767877442.53925
[2026-01-26 16:46:41] 2026-01-26 21:45:38,476 | INFO     | sum of deviations: 463745034199.61786
[2026-01-26 16:46:41] 2026-01-26 21:45:38,476 | INFO     | mean x: 1769434755.1598747
[2026-01-26 16:46:41] 2026-01-26 21:45:38,476 | INFO     | mean y: 2516899.812957158
[2026-01-26 16:46:41] 2026-01-26 21:45:38,477 | INFO     | intersect: -3016848702.801736
[2026-01-26 16:46:41] 2026-01-26 21:45:38,478 | INFO     | chi2: 2.527240351276609
[2026-01-26 16:46:41] 2026-01-26 21:45:38,479 | INFO     | sum of square deviations: 267530592345.7775
[2026-01-26 16:46:41] 2026-01-26 21:45:38,507 | INFO     | sum of deviations: 525338847571.72516
[2026-01-26 16:46:41] 2026-01-26 21:45:38,507 | INFO     | mean x: 1769434602.6659663
[2026-01-26 16:46:41] 2026-01-26 21:45:38,507 | INFO     | mean y: 2519106.587184874
[2026-01-26 16:46:41] 2026-01-26 21:45:38,507 | INFO     | intersect: -3472047023.841164
[2026-01-26 16:46:41] 2026-01-26 21:45:38,509 | INFO     | chi2: 1.7405049227212916
[2026-01-26 16:46:41] 2026-01-26 21:45:38,509 | INFO     | current chi2=1.7405049227212916 (change=31.13021791369809 %)
[2026-01-26 16:46:41] 2026-01-26 21:45:38,511 | INFO     | sum of square deviations: 263337587148.94418
[2026-01-26 16:46:41] 2026-01-26 21:45:38,537 | INFO     | sum of deviations: 521048289843.04596
[2026-01-26 16:46:41] 2026-01-26 21:45:38,537 | INFO     | mean x: 1769434450.1721225
[2026-01-26 16:46:41] 2026-01-26 21:45:38,538 | INFO     | mean y: 2518950.5395987327
[2026-01-26 16:46:41] 2026-01-26 21:45:38,538 | INFO     | intersect: -3498541434.471418
[2026-01-26 16:46:41] 2026-01-26 21:45:38,539 | INFO     | chi2: 1.7402818412001595
[2026-01-26 16:46:41] 2026-01-26 21:45:38,539 | INFO     | current chi2=1.7402818412001595 (change=0.012817057752606742 %)
[2026-01-26 16:46:41] 2026-01-26 21:45:38,540 | INFO     | right removable region: 946
[2026-01-26 16:46:41] 2026-01-26 21:45:38,541 | INFO     | sum of square deviations: 267529915245.77734
[2026-01-26 16:46:41] 2026-01-26 21:45:38,568 | INFO     | sum of deviations: 300506498611.979
[2026-01-26 16:46:41] 2026-01-26 21:45:38,568 | INFO     | mean x: 1769434907.6659663
[2026-01-26 16:46:41] 2026-01-26 21:45:38,568 | INFO     | mean y: 2522761.968487395
[2026-01-26 16:46:41] 2026-01-26 21:45:38,569 | INFO     | intersect: -1985018287.9212692
[2026-01-26 16:46:41] 2026-01-26 21:45:38,570 | INFO     | chi2: 1.0189637132585492
[2026-01-26 16:46:41] 2026-01-26 21:45:38,570 | INFO     | current chi2=1.0189637132585492 (change=59.68077540611322 %)
[2026-01-26 16:46:41] 2026-01-26 21:45:38,572 | INFO     | sum of square deviations: 263336290778.28723
[2026-01-26 16:46:41] 2026-01-26 21:45:38,598 | INFO     | sum of deviations: 260752395228.57022
[2026-01-26 16:46:41] 2026-01-26 21:45:38,598 | INFO     | mean x: 1769435060.1710665
[2026-01-26 16:46:41] 2026-01-26 21:45:38,598 | INFO     | mean y: 2524207.6631467794
[2026-01-26 16:46:41] 2026-01-26 21:45:38,598 | INFO     | intersect: -1749548887.835384
[2026-01-26 16:46:41] 2026-01-26 21:45:38,600 | INFO     | chi2: 0.972006025980737
[2026-01-26 16:46:41] 2026-01-26 21:45:38,600 | INFO     | current chi2=0.972006025980737 (change=4.608376791715763 %)
[2026-01-26 16:46:41] 2026-01-26 21:45:38,600 | INFO     | left removable region: 20
[2026-01-26 16:46:41] 2026-01-26 21:45:38,601 | INFO     | sum of square deviations: 246203288255.9227
[2026-01-26 16:46:41] 2026-01-26 21:45:38,627 | INFO     | sum of deviations: 240580126553.9397
[2026-01-26 16:46:41] 2026-01-26 21:45:38,628 | INFO     | mean x: 1769435029.6846652
[2026-01-26 16:46:41] 2026-01-26 21:45:38,628 | INFO     | mean y: 2529295.1436285097
[2026-01-26 16:46:41] 2026-01-26 21:45:38,628 | INFO     | intersect: -1726492710.9638398
[2026-01-26 16:46:41] 2026-01-26 21:45:38,629 | INFO     | chi2: 0.0844317437911586
[2026-01-26 16:46:41] 2026-01-26 21:45:38,630 | INFO     | current memory leak: 0.98 B/s (using 926 data points, chi2=0.08)
[2026-01-26 16:46:41] 2026-01-26 21:45:38,631 | INFO     | could have reported an average CPU frequency of 2900 MHz (36 samples)
[2026-01-26 16:46:41] 2026-01-26 21:45:38,631 | INFO     | ..............................
[2026-01-26 16:46:41] 2026-01-26 21:45:38,631 | INFO     | . Timing measurements:
[2026-01-26 16:46:41] 2026-01-26 21:45:38,631 | INFO     | . get job = 0 s
[2026-01-26 16:46:41] 2026-01-26 21:45:38,631 | INFO     | . initial setup = 1 s
[2026-01-26 16:46:41] 2026-01-26 21:45:38,632 | INFO     | . payload setup = 10 s
[2026-01-26 16:46:41] 2026-01-26 21:45:38,632 | INFO     | . stage-in = 0 s
[2026-01-26 16:46:41] 2026-01-26 21:45:38,632 | INFO     | . payload execution = 58342 s
[2026-01-26 16:46:41] 2026-01-26 21:45:38,632 | INFO     | . stage-out = 3 s
[2026-01-26 16:46:41] 2026-01-26 21:45:38,632 | INFO     | . log creation = 0 s
[2026-01-26 16:46:41] 2026-01-26 21:45:38,632 | INFO     | ..............................
[2026-01-26 16:46:41] 2026-01-26 21:45:38,673 | INFO     | time since job start (58376s) is within the limit (349056.0s)
[2026-01-26 16:46:41] 2026-01-26 21:45:38,777 | INFO     | 
[2026-01-26 16:46:41] 2026-01-26 21:45:38,777 | INFO     | job summary report
[2026-01-26 16:46:41] 2026-01-26 21:45:38,777 | INFO     | --------------------------------------------------
[2026-01-26 16:46:41] 2026-01-26 21:45:38,777 | INFO     | PanDA job id: 6983602271
[2026-01-26 16:46:41] 2026-01-26 21:45:38,777 | INFO     | task id: 48329598
[2026-01-26 16:46:41] 2026-01-26 21:45:38,778 | INFO     | errors: (none)
[2026-01-26 16:46:41] 2026-01-26 21:45:38,778 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 16:46:41] 2026-01-26 21:45:38,778 | INFO     | pilot state: finished 
[2026-01-26 16:46:41] 2026-01-26 21:45:38,778 | INFO     | transexitcode: 0
[2026-01-26 16:46:41] 2026-01-26 21:45:38,778 | INFO     | exeerrorcode: 0
[2026-01-26 16:46:41] 2026-01-26 21:45:38,778 | INFO     | exeerrordiag: 
[2026-01-26 16:46:41] 2026-01-26 21:45:38,779 | INFO     | exitcode: 0
[2026-01-26 16:46:41] 2026-01-26 21:45:38,779 | INFO     | exitmsg: OK
[2026-01-26 16:46:41] 2026-01-26 21:45:38,779 | INFO     | cpuconsumptiontime: 115273 s
[2026-01-26 16:46:41] 2026-01-26 21:45:38,779 | INFO     | nevents: 400
[2026-01-26 16:46:41] 2026-01-26 21:45:38,779 | INFO     | neventsw: 0
[2026-01-26 16:46:41] 2026-01-26 21:45:38,779 | INFO     | pid: 3716128
[2026-01-26 16:46:41] 2026-01-26 21:45:38,780 | INFO     | pgrp: 3716128
[2026-01-26 16:46:41] 2026-01-26 21:45:38,780 | INFO     | corecount: 8
[2026-01-26 16:46:41] 2026-01-26 21:45:38,780 | INFO     | event service: False
[2026-01-26 16:46:41] 2026-01-26 21:45:38,780 | INFO     | sizes: {0: 2283920, 1: 2284381, 12: 2284381, 58356: 2335377, 58360: 2344375, 58361: 2344431, 58364: 2344753}
[2026-01-26 16:46:41] 2026-01-26 21:45:38,780 | INFO     | --------------------------------------------------
[2026-01-26 16:46:41] 2026-01-26 21:45:38,780 | INFO     | 
[2026-01-26 16:46:41] 2026-01-26 21:45:38,781 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-26 16:46:41] 2026-01-26 21:45:38,803 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 16:46:41] 2026-01-26 21:45:38,803 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 16:46:41] 2026-01-26 21:45:38,803 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 16:46:41] 2026-01-26 21:45:38,803 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 16:46:41] 2026-01-26 21:45:38,803 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 16:46:41] 2026-01-26 21:45:38,804 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 16:46:41] 2026-01-26 21:45:38,804 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 16:46:41] 2026-01-26 21:45:38,804 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 16:46:41] 2026-01-26 21:45:38,804 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 16:46:41] 2026-01-26 21:45:38,804 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 16:46:41] 2026-01-26 21:45:38,804 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 16:46:41] 2026-01-26 21:45:38,805 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 16:46:41] 2026-01-26 21:45:38,805 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 16:46:41] 2026-01-26 21:45:38,805 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 16:46:41] 2026-01-26 21:45:38,805 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 16:46:41] 2026-01-26 21:45:38,805 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 16:46:41] 2026-01-26 21:45:38,805 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 16:46:41] 2026-01-26 21:45:38,806 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 16:46:41] 2026-01-26 21:45:38,806 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 16:46:41] 2026-01-26 21:45:38,806 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 16:46:41] 2026-01-26 21:45:38,806 | INFO     | job 6983602271 has completed (purged errors)
[2026-01-26 16:46:41] 2026-01-26 21:45:38,806 | INFO     | overall cleanup function is called
[2026-01-26 16:46:41] 2026-01-26 21:45:39,819 | INFO     | --- collectZombieJob: --- 10, [3716128]
[2026-01-26 16:46:41] 2026-01-26 21:45:39,819 | INFO     | zombie collector waiting for pid 3716128
[2026-01-26 16:46:41] 2026-01-26 21:45:39,819 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 16:46:41] 2026-01-26 21:45:39,819 | INFO     | collected zombie processes
[2026-01-26 16:46:41] 2026-01-26 21:45:39,820 | INFO     | will attempt to kill all subprocesses of pid=3716128
[2026-01-26 16:46:41] 2026-01-26 21:45:40,765 | INFO     | process IDs to be killed: [3716128] (in reverse order)
[2026-01-26 16:46:41] 2026-01-26 21:45:40,867 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 16:46:41] 2026-01-26 21:45:40,868 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 16:46:41] 2026-01-26 21:45:40,884 | INFO     | did not find any defunct processes belonging to 3716128
[2026-01-26 16:46:41] 2026-01-26 21:45:40,902 | INFO     | did not find any defunct processes belonging to 3716128
[2026-01-26 16:46:41] 2026-01-26 21:45:40,903 | INFO     | ready for new job
[2026-01-26 16:46:41] 2026-01-26 21:45:40,903 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 16:46:41] 2026-01-26 21:45:40,907 | INFO     | **************************************
[2026-01-26 16:46:41] 2026-01-26 21:45:40,908 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 16:46:41] 2026-01-26 21:45:40,908 | INFO     | **************************************
[2026-01-26 16:46:41] 2026-01-26 21:45:40,908 | INFO     | 
[2026-01-26 16:46:41] 2026-01-26 21:45:40,910 | INFO     | architecture information:
[2026-01-26 16:46:41] 2026-01-26 21:45:40,910 | INFO     | executing command: cat /etc/os-release
[2026-01-26 16:46:41] 2026-01-26 21:45:40,964 | INFO     | cat /etc/os-release:
[2026-01-26 16:46:41] NAME="CentOS Linux"
[2026-01-26 16:46:41] VERSION="7 (Core)"
[2026-01-26 16:46:41] ID="centos"
[2026-01-26 16:46:41] ID_LIKE="rhel fedora"
[2026-01-26 16:46:41] VERSION_ID="7"
[2026-01-26 16:46:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 16:46:41] ANSI_COLOR="0;31"
[2026-01-26 16:46:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 16:46:41] HOME_URL="https://www.centos.org/"
[2026-01-26 16:46:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 16:46:41] 
[2026-01-26 16:46:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 16:46:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 16:46:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 16:46:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 16:46:41] 
[2026-01-26 16:46:41] 2026-01-26 21:45:40,965 | INFO     | **************************************
[2026-01-26 16:46:41] 2026-01-26 21:45:41,468 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-26 16:46:41] 2026-01-26 21:45:41,491 | INFO     | sufficient remaining disk space (52113178624 B)
[2026-01-26 16:46:41] 2026-01-26 21:45:41,492 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 16:46:41] 2026-01-26 21:45:41,492 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 16:46:41] 2026-01-26 21:45:41,492 | INFO     | update_server=False
[2026-01-26 16:46:41] 2026-01-26 21:45:41,492 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 16:46:41] 2026-01-26 21:45:41,493 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 16:46:41] 2026-01-26 21:45:41,493 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 16:46:41] 2026-01-26 21:45:41,545 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-26 16:46:41] 2026-01-26 21:45:41,545 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-26 16:46:41] 2026-01-26 21:45:41,545 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 16:46:41] 2026-01-26 21:45:41,545 | INFO     | will abort loop
[2026-01-26 16:46:41] 2026-01-26 21:45:41,976 | INFO     | all job control threads have been joined
[2026-01-26 16:46:41] 2026-01-26 21:45:42,184 | INFO     | all payload control threads have been joined
[2026-01-26 16:46:41] 2026-01-26 21:45:42,366 | INFO     | all data control threads have been joined
[2026-01-26 16:46:41] 2026-01-26 21:45:42,508 | INFO     | [job] retrieve thread has finished
[2026-01-26 16:46:41] 2026-01-26 21:45:42,523 | INFO     | [payload] failed_post thread has finished
[2026-01-26 16:46:41] 2026-01-26 21:45:42,561 | INFO     | [job] job monitor thread has finished
[2026-01-26 16:46:41] 2026-01-26 21:45:42,748 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 16:46:41] 2026-01-26 21:45:42,749 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 16:46:41] 2026-01-26 21:45:42,982 | INFO     | [job] control thread has finished
[2026-01-26 16:46:41] 2026-01-26 21:45:43,190 | INFO     | [payload] control thread has finished
[2026-01-26 16:46:41] 2026-01-26 21:45:43,372 | INFO     | [data] control thread has finished
[2026-01-26 16:46:41] 2026-01-26 21:45:43,435 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 16:46:41] 2026-01-26 21:45:43,436 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 16:46:41] 2026-01-26 21:45:43,477 | INFO     | [payload] validate_post thread has finished
[2026-01-26 16:46:41] 2026-01-26 21:45:43,490 | INFO     | [job] validate thread has finished
[2026-01-26 16:46:41] 2026-01-26 21:45:43,504 | INFO     | [data] copytool_out thread has finished
[2026-01-26 16:46:41] 2026-01-26 21:45:43,658 | INFO     | [data] copytool_in thread has finished
[2026-01-26 16:46:41] 2026-01-26 21:45:43,790 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 16:46:41] 2026-01-26 21:45:44,796 | INFO     | [job] queue monitor thread has finished
[2026-01-26 16:46:41] 2026-01-26 21:45:45,509 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 16:46:41] 2026-01-26 21:46:12,470 | INFO     | PID=3696851 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 16:46:41] 2026-01-26 21:46:12,470 | INFO     | .. there are 11 such processes running
[2026-01-26 16:46:41] 2026-01-26 21:46:12,482 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 16:46:41] 2026-01-26 21:46:12,482 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 16:46:41] 2026-01-26 21:46:12,482 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 16:46:41] 2026-01-26 21:46:34,677 | INFO     | [monitor] cgroup control has ended
[2026-01-26 16:46:41] 2026-01-26 21:46:36,028 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139652856903488)>', '<ExcThread(monitor, started 139652488992512)>']
[2026-01-26 16:46:41] 2026-01-26 21:46:36,642 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 16:46:41] 2026-01-26 21:46:36,642 | INFO     | [monitor] control thread has ended
[2026-01-26 16:46:41] 2026-01-26 21:46:41,054 | INFO     | all workflow threads have been joined
[2026-01-26 16:46:41] 2026-01-26 21:46:41,054 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 16:46:41] 2026-01-26 21:46:41,054 | INFO     | traces error code: 0
[2026-01-26 16:46:41] 2026-01-26 21:46:41,055 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 16:46:41] 2026-01-26 21:46:41,517 [wrapper] ==== pilot stdout END ====
[2026-01-26 16:46:41] 2026-01-26 21:46:41,521 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 16:46:41] 2026-01-26 21:46:41,524 [wrapper] pilotpid: 3696851
[2026-01-26 16:46:41] 2026-01-26 21:46:41,527 [wrapper] Pilot exit status: 0
[2026-01-26 16:46:41] 2026-01-26 21:46:41,601 [wrapper] pandaids: 6983602271 6983602271
[2026-01-26 16:46:41] 2026-01-26 21:46:41,678 [wrapper] cleanup supervisor_pilot 3283125 3696852
[2026-01-26 16:46:41] 2026-01-26 21:46:41,682 [wrapper] Test setup, not cleaning
[2026-01-26 16:46:41] 2026-01-26 21:46:41,685 [wrapper] apfmon messages muted
[2026-01-26 16:46:41] 2026-01-26 21:46:41,689 [wrapper] ==== wrapper stdout END ====
[2026-01-26 16:46:41] 2026-01-26 21:46:41,692 [wrapper] ==== wrapper stderr END ====
[2026-01-26 16:46:41]  *** Error codes and diagnostics ***
[2026-01-26 16:46:41]     "exeErrorCode": 0,
[2026-01-26 16:46:41]     "exeErrorDiag": "",
[2026-01-26 16:46:41]     "pilotErrorCode": 0,
[2026-01-26 16:46:41]     "pilotErrorDiag": "",
[2026-01-26 16:46:41]  *** Listing of results directory ***
[2026-01-26 16:46:41] total 739072
[2026-01-26 16:46:41] drwx------. 5 boincer umatlas      4096 Jan 14 05:00 pilot3
[2026-01-26 16:46:41] -rw-r--r--. 1 boincer umatlas    584422 Jan 25 20:12 pilot3.tar.gz
[2026-01-26 16:46:41] -rwx------. 1 boincer umatlas     36322 Jan 25 20:12 runpilot2-wrapper.sh
[2026-01-26 16:46:41] -rw-r--r--. 1 boincer umatlas      5111 Jan 25 20:14 queuedata.json
[2026-01-26 16:46:41] -rw-r--r--. 1 boincer umatlas       100 Jan 26 00:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 16:46:41] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 26 00:19 run_atlas
[2026-01-26 16:46:41] -rw-r--r--. 1 boincer umatlas       105 Jan 26 00:19 job.xml
[2026-01-26 16:46:41] -rw-r--r--. 3 boincer umatlas 273434957 Jan 26 00:19 EVNT.48329596._000004.pool.root.1
[2026-01-26 16:46:41] -rw-r--r--. 3 boincer umatlas 273434957 Jan 26 00:19 ATLAS.root_0
[2026-01-26 16:46:41] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 00:19 start_atlas.sh
[2026-01-26 16:46:41] drwxrwx--x. 2 boincer umatlas      4096 Jan 26 00:19 shared
[2026-01-26 16:46:41] -rw-r--r--. 2 boincer umatlas    597771 Jan 26 00:19 input.tar.gz
[2026-01-26 16:46:41] -rw-r--r--. 1 boincer umatlas         0 Jan 26 00:19 boinc_lockfile
[2026-01-26 16:46:41] -rw-r--r--. 1 boincer umatlas      2605 Jan 26 00:32 pandaJob.out
[2026-01-26 16:46:41] -rw-------. 1 boincer umatlas        57 Jan 26 00:32 setup.sh.local
[2026-01-26 16:46:41] -rw-------. 1 boincer umatlas   1004254 Jan 26 00:32 agis_schedconf.cvmfs.json
[2026-01-26 16:46:41] -rw-------. 1 boincer umatlas       442 Jan 26 00:32 workernode_map.json
[2026-01-26 16:46:41] -rw-r--r--. 1 boincer umatlas      6524 Jan 26 16:39 init_data.xml
[2026-01-26 16:46:41] -rw-------. 1 boincer umatlas 190279091 Jan 26 16:44 HITS.48329598._000086.pool.root.1
[2026-01-26 16:46:41] -rw-r--r--. 1 boincer umatlas       531 Jan 26 16:44 boinc_task_state.xml
[2026-01-26 16:46:41] -rw-------. 1 boincer umatlas      1041 Jan 26 16:45 memory_monitor_summary.json
[2026-01-26 16:46:41] -rw-------. 1 boincer umatlas        96 Jan 26 16:45 pilot_heartbeat.json
[2026-01-26 16:46:41] -rw-------. 1 boincer umatlas   1516246 Jan 26 16:45 agis_ddmendpoints.agis.ALL.json
[2026-01-26 16:46:41] -rw-------. 1 boincer umatlas    976264 Jan 26 16:45 log.48329598._000086.job.log.tgz.1
[2026-01-26 16:46:41] -rw-------. 1 boincer umatlas      6378 Jan 26 16:45 heartbeat.json
[2026-01-26 16:46:41] -rw-r--r--. 1 boincer umatlas        28 Jan 26 16:46 wrapper_checkpoint.txt
[2026-01-26 16:46:41] -rw-------. 1 boincer umatlas      5006 Jan 26 16:46 pilotlog.txt
[2026-01-26 16:46:41] -rw-r--r--. 1 boincer umatlas      8192 Jan 26 16:46 boinc_mmap_file
[2026-01-26 16:46:41] -rw-------. 1 boincer umatlas   6882871 Jan 26 16:46 log.48329598._000086.job.log.1
[2026-01-26 16:46:41] -rw-------. 1 boincer umatlas       357 Jan 26 16:46 output.list
[2026-01-26 16:46:41] -rw-r--r--. 1 boincer umatlas       620 Jan 26 16:46 runtime_log
[2026-01-26 16:46:41] -rw-------. 1 boincer umatlas   7874560 Jan 26 16:46 result.tar.gz
[2026-01-26 16:46:41] -rw-r--r--. 1 boincer umatlas      9427 Jan 26 16:46 runtime_log.err
[2026-01-26 16:46:41] -rw-------. 1 boincer umatlas       783 Jan 26 16:46 LmmMDmpKQ48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmlC2KDmfvuRnn.diag
[2026-01-26 16:46:41] -rw-r--r--. 1 boincer umatlas     23430 Jan 26 16:46 stderr.txt
[2026-01-26 16:46:41] HITS file was successfully produced:
[2026-01-26 16:46:41] -rw-------. 1 boincer umatlas 190279091 Jan 26 16:44 shared/HITS.pool.root.1
[2026-01-26 16:46:41]  *** Contents of shared directory: ***
[2026-01-26 16:46:41] total 461144
[2026-01-26 16:46:41] -rw-r--r--. 3 boincer umatlas 273434957 Jan 26 00:19 ATLAS.root_0
[2026-01-26 16:46:41] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 00:19 start_atlas.sh
[2026-01-26 16:46:41] -rw-r--r--. 2 boincer umatlas    597771 Jan 26 00:19 input.tar.gz
[2026-01-26 16:46:41] -rw-------. 1 boincer umatlas 190279091 Jan 26 16:44 HITS.pool.root.1
[2026-01-26 16:46:41] -rw-------. 1 boincer umatlas   7874560 Jan 26 16:46 result.tar.gz
16:47:03 (3680429): run_atlas exited; CPU time 117869.479381
16:47:03 (3680429): called boinc_finish(0)

</stderr_txt>
]]>

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