Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:13:56 (1213022): wrapper (7.7.26015): starting
15:13:56 (1213022): wrapper: running run_atlas (--nthreads 3)
[2026-01-26 15:13:56] Arguments: --nthreads 3
[2026-01-26 15:13:56] Threads: 3
[2026-01-26 15:13:56] Checking for CVMFS
[2026-01-26 15:13:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 15:13:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 15:13:57] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 15:13:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 15:13:57] 2.9.2.0 2182370 8396 91780 155548 0 50 26403088 36864001 0 130560 0 3749926 99.987 262820 5926 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 15:13:57] CVMFS is ok
[2026-01-26 15:13:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 15:13:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 15:13:57] Further information can be found at the LHC@home message board.
[2026-01-26 15:13:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 15:13:57] Checking for apptainer binary...
[2026-01-26 15:13:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 15:13:57] Running /usr/bin/apptainer --version
[2026-01-26 15:13:57] apptainer version 1.4.1-1.1
[2026-01-26 15:13:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 15:13:57] atlasA303
[2026-01-26 15:13:57] apptainer works
[2026-01-26 15:13:57] Set ATHENA_PROC_NUMBER=3
[2026-01-26 15:13:57] Set ATHENA_CORE_NUMBER=3
[2026-01-26 15:13:57] Starting ATLAS job with PandaID=6983771613
[2026-01-26 15:13:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 16:35:25]  *** The last 200 lines of the pilot log: ***
[2026-01-26 16:35:25] 2026-01-26 15:34:54,362 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 16:35:25] 2026-01-26 15:34:54,362 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 16:35:25] 2026-01-26 15:34:54,362 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 16:35:25] 2026-01-26 15:34:54,362 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 16:35:25] 2026-01-26 15:34:54,362 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 16:35:25] 2026-01-26 15:34:54,362 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 16:35:25] 2026-01-26 15:34:54,362 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 16:35:25] 2026-01-26 15:34:54,362 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 16:35:25] 2026-01-26 15:34:54,362 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 16:35:25] 2026-01-26 15:34:54,362 | INFO     | job 6983771613 has completed (purged errors)
[2026-01-26 16:35:25] 2026-01-26 15:34:54,362 | INFO     | overall cleanup function is called
[2026-01-26 16:35:25] 2026-01-26 15:34:55,368 | INFO     | --- collectZombieJob: --- 10, [1221589]
[2026-01-26 16:35:25] 2026-01-26 15:34:55,369 | INFO     | zombie collector waiting for pid 1221589
[2026-01-26 16:35:25] 2026-01-26 15:34:55,369 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 16:35:25] 2026-01-26 15:34:55,369 | INFO     | collected zombie processes
[2026-01-26 16:35:25] 2026-01-26 15:34:55,369 | INFO     | will attempt to kill all subprocesses of pid=1221589
[2026-01-26 16:35:25] 2026-01-26 15:34:55,412 | INFO     | process IDs to be killed: [1221589] (in reverse order)
[2026-01-26 16:35:25] 2026-01-26 15:34:55,436 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 16:35:25] 2026-01-26 15:34:55,437 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 16:35:25] 2026-01-26 15:34:55,438 | INFO     | did not find any defunct processes belonging to 1221589
[2026-01-26 16:35:25] 2026-01-26 15:34:55,439 | INFO     | did not find any defunct processes belonging to 1221589
[2026-01-26 16:35:25] 2026-01-26 15:34:55,439 | INFO     | ready for new job
[2026-01-26 16:35:25] 2026-01-26 15:34:55,439 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 16:35:25] 2026-01-26 15:34:55,440 | INFO     | **************************************
[2026-01-26 16:35:25] 2026-01-26 15:34:55,440 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 16:35:25] 2026-01-26 15:34:55,440 | INFO     | **************************************
[2026-01-26 16:35:25] 2026-01-26 15:34:55,440 | INFO     | 
[2026-01-26 16:35:25] 2026-01-26 15:34:55,440 | INFO     | architecture information:
[2026-01-26 16:35:25] 2026-01-26 15:34:55,440 | INFO     | executing command: cat /etc/os-release
[2026-01-26 16:35:25] 2026-01-26 15:34:55,449 | INFO     | cat /etc/os-release:
[2026-01-26 16:35:25] NAME="CentOS Linux"
[2026-01-26 16:35:25] VERSION="7 (Core)"
[2026-01-26 16:35:25] ID="centos"
[2026-01-26 16:35:25] ID_LIKE="rhel fedora"
[2026-01-26 16:35:25] VERSION_ID="7"
[2026-01-26 16:35:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 16:35:25] ANSI_COLOR="0;31"
[2026-01-26 16:35:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 16:35:25] HOME_URL="https://www.centos.org/"
[2026-01-26 16:35:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 16:35:25] 
[2026-01-26 16:35:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 16:35:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 16:35:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 16:35:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 16:35:25] 
[2026-01-26 16:35:25] 2026-01-26 15:34:55,449 | INFO     | **************************************
[2026-01-26 16:35:25] 2026-01-26 15:34:55,952 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 16:35:25] 2026-01-26 15:34:55,965 | INFO     | sufficient remaining disk space (375739383808 B)
[2026-01-26 16:35:25] 2026-01-26 15:34:55,965 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 16:35:25] 2026-01-26 15:34:55,965 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 16:35:25] 2026-01-26 15:34:55,965 | INFO     | update_server=False
[2026-01-26 16:35:25] 2026-01-26 15:34:55,965 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 16:35:25] 2026-01-26 15:34:55,965 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 16:35:25] 2026-01-26 15:34:55,966 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 16:35:25] 2026-01-26 15:34:56,075 | INFO     | all job control threads have been joined
[2026-01-26 16:35:25] 2026-01-26 15:34:56,710 | INFO     | all payload control threads have been joined
[2026-01-26 16:35:25] 2026-01-26 15:34:56,766 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 16:35:25] 2026-01-26 15:34:56,766 | INFO     | aborting loop
[2026-01-26 16:35:25] 2026-01-26 15:34:56,966 | INFO     | [job] retrieve thread has finished
[2026-01-26 16:35:25] 2026-01-26 15:34:56,971 | INFO     | [job] queue monitor thread has finished
[2026-01-26 16:35:25] 2026-01-26 15:34:56,983 | INFO     | [payload] validate_post thread has finished
[2026-01-26 16:35:25] 2026-01-26 15:34:57,025 | INFO     | all data control threads have been joined
[2026-01-26 16:35:25] 2026-01-26 15:34:57,081 | INFO     | [job] control thread has finished
[2026-01-26 16:35:25] 2026-01-26 15:34:57,291 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 16:35:25] 2026-01-26 15:34:57,411 | INFO     | [job] validate thread has finished
[2026-01-26 16:35:25] 2026-01-26 15:34:57,432 | INFO     | [payload] failed_post thread has finished
[2026-01-26 16:35:25] 2026-01-26 15:34:57,471 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 16:35:25] 2026-01-26 15:34:57,539 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 16:35:25] 2026-01-26 15:34:57,605 | INFO     | [data] copytool_in thread has finished
[2026-01-26 16:35:25] 2026-01-26 15:34:57,711 | INFO     | [payload] control thread has finished
[2026-01-26 16:35:25] 2026-01-26 15:34:57,771 | INFO     | [job] job monitor thread has finished
[2026-01-26 16:35:25] 2026-01-26 15:34:57,972 | INFO     | [data] copytool_out thread has finished
[2026-01-26 16:35:25] 2026-01-26 15:34:58,030 | INFO     | [data] control thread has finished
[2026-01-26 16:35:25] 2026-01-26 15:34:58,159 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 16:35:25] 2026-01-26 15:34:59,077 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 16:35:25] 2026-01-26 15:35:03,084 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 16:35:25] 2026-01-26 15:35:11,182 | INFO     | [monitor] cgroup control has ended
[2026-01-26 16:35:25] 2026-01-26 15:35:12,241 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140153271822144)>', '<ExcThread(monitor, started 140152919791360)>']
[2026-01-26 16:35:25] 2026-01-26 15:35:17,267 | INFO     | all workflow threads have been joined
[2026-01-26 16:35:25] 2026-01-26 15:35:17,267 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 16:35:25] 2026-01-26 15:35:17,267 | INFO     | traces error code: 0
[2026-01-26 16:35:25] 2026-01-26 15:35:17,268 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 16:35:25] 2026-01-26 15:35:25,761 | INFO     | PID=1217101 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 16:35:25] 2026-01-26 15:35:25,761 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 16:35:25] 2026-01-26 15:35:25,761 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 16:35:25] 2026-01-26 15:35:25,761 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 16:35:25] 2026-01-26 15:35:25,761 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 16:35:25] 2026-01-26 15:35:25,761 | CRITICAL | thread 'MainThread' is not alive
[2026-01-26 16:35:25] 2026-01-26 15:35:25,761 | INFO     | [monitor] control thread has ended
[2026-01-26 16:35:25] 2026-01-26 15:35:25,807 [wrapper] ==== pilot stdout END ====
[2026-01-26 16:35:25] 2026-01-26 15:35:25,810 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 16:35:25] 2026-01-26 15:35:25,812 [wrapper] pilotpid: 1217101
[2026-01-26 16:35:25] 2026-01-26 15:35:25,814 [wrapper] Pilot exit status: 0
[2026-01-26 16:35:25] 2026-01-26 15:35:25,821 [wrapper] pandaids: 6983771613
[2026-01-26 16:35:25] 2026-01-26 15:35:25,837 [wrapper] cleanup supervisor_pilot 1243797 1217102
[2026-01-26 16:35:25] 2026-01-26 15:35:25,840 [wrapper] Test setup, not cleaning
[2026-01-26 16:35:25] 2026-01-26 15:35:25,842 [wrapper] apfmon messages muted
[2026-01-26 16:35:25] 2026-01-26 15:35:25,845 [wrapper] ==== wrapper stdout END ====
[2026-01-26 16:35:25] 2026-01-26 15:35:25,847 [wrapper] ==== wrapper stderr END ====
[2026-01-26 16:35:25]  *** Error codes and diagnostics ***
[2026-01-26 16:35:25]     "exeErrorCode": 0,
[2026-01-26 16:35:25]     "exeErrorDiag": "",
[2026-01-26 16:35:25]     "pilotErrorCode": 0,
[2026-01-26 16:35:25]     "pilotErrorDiag": "",
[2026-01-26 16:35:25]  *** Listing of results directory ***
[2026-01-26 16:35:25] total 668852
[2026-01-26 16:35:25] -rw-r--r-- 1 boinc boinc      5111 Jan 26 02:12 queuedata.json
[2026-01-26 16:35:25] -rw-r--r-- 1 boinc boinc    584422 Jan 26 02:12 pilot3.tar.gz
[2026-01-26 16:35:25] -rwx------ 1 boinc boinc     36322 Jan 26 02:12 runpilot2-wrapper.sh
[2026-01-26 16:35:25] -rw-r--r-- 1 boinc boinc       100 Jan 26 15:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 16:35:25] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 15:13 run_atlas
[2026-01-26 16:35:25] -rw-r--r-- 1 boinc boinc       105 Jan 26 15:13 job.xml
[2026-01-26 16:35:25] -rw-r--r-- 2 boinc boinc 500453792 Jan 26 15:13 EVNT.48317869._000031.pool.root.1
[2026-01-26 16:35:25] -rw-r--r-- 2 boinc boinc    597749 Jan 26 15:13 input.tar.gz
[2026-01-26 16:35:25] -rw-r--r-- 2 boinc boinc     15845 Jan 26 15:13 start_atlas.sh
[2026-01-26 16:35:25] drwxrwx--x 2 boinc boinc      4096 Jan 26 15:13 shared
[2026-01-26 16:35:25] -rw-r--r-- 1 boinc boinc         0 Jan 26 15:13 boinc_setup_complete
[2026-01-26 16:35:25] -rw-r--r-- 1 boinc boinc      6447 Jan 26 15:13 init_data.xml
[2026-01-26 16:35:25] -rw-r--r-- 1 boinc boinc         0 Jan 26 15:13 boinc_lockfile
[2026-01-26 16:35:25] -rw-r--r-- 1 boinc boinc      2513 Jan 26 15:13 pandaJob.out
[2026-01-26 16:35:25] -rw------- 1 boinc boinc   1002197 Jan 26 15:14 agis_schedconf.cvmfs.json
[2026-01-26 16:35:25] -rw------- 1 boinc boinc   1516246 Jan 26 15:14 agis_ddmendpoints.agis.ALL.json
[2026-01-26 16:35:25] -rw------- 1 boinc boinc       425 Jan 26 15:14 workernode_map.json
[2026-01-26 16:35:25] drwx------ 5 boinc boinc      4096 Jan 26 15:14 pilot3
[2026-01-26 16:35:25] -rw------- 1 boinc boinc        95 Jan 26 16:34 pilot_heartbeat.json
[2026-01-26 16:35:25] -rw------- 1 boinc boinc 178573442 Jan 26 16:34 HITS.48317872._001536.pool.root.1
[2026-01-26 16:35:25] -rw-r--r-- 1 boinc boinc       530 Jan 26 16:34 boinc_task_state.xml
[2026-01-26 16:35:25] -rw------- 1 boinc boinc      1030 Jan 26 16:34 memory_monitor_summary.json
[2026-01-26 16:35:25] -rw------- 1 boinc boinc    266035 Jan 26 16:34 log.48317872._001536.job.log.tgz.1
[2026-01-26 16:35:25] -rw------- 1 boinc boinc      6308 Jan 26 16:34 heartbeat.json
[2026-01-26 16:35:25] -rw-r--r-- 1 boinc boinc      8192 Jan 26 16:35 boinc_mmap_file
[2026-01-26 16:35:25] -rw-r--r-- 1 boinc boinc        27 Jan 26 16:35 wrapper_checkpoint.txt
[2026-01-26 16:35:25] -rw------- 1 boinc boinc       817 Jan 26 16:35 pilotlog.txt
[2026-01-26 16:35:25] -rw------- 1 boinc boinc    711777 Jan 26 16:35 log.48317872._001536.job.log.1
[2026-01-26 16:35:25] -rw------- 1 boinc boinc       357 Jan 26 16:35 output.list
[2026-01-26 16:35:25] -rw-r--r-- 1 boinc boinc       620 Jan 26 16:35 runtime_log
[2026-01-26 16:35:25] -rw------- 1 boinc boinc    993280 Jan 26 16:35 result.tar.gz
[2026-01-26 16:35:25] -rw-r--r-- 1 boinc boinc      8911 Jan 26 16:35 runtime_log.err
[2026-01-26 16:35:25] -rw------- 1 boinc boinc       660 Jan 26 16:35 SuvMDmTKQ48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmih8KDmEjw0ln.diag
[2026-01-26 16:35:25] -rw-r--r-- 1 boinc boinc     11816 Jan 26 16:35 stderr.txt
[2026-01-26 16:35:25] HITS file was successfully produced:
[2026-01-26 16:35:25] -rw------- 1 boinc boinc 178573442 Jan 26 16:34 shared/HITS.pool.root.1
[2026-01-26 16:35:25]  *** Contents of shared directory: ***
[2026-01-26 16:35:25] total 664700
[2026-01-26 16:35:25] -rw-r--r-- 2 boinc boinc 500453792 Jan 26 15:13 ATLAS.root_0
[2026-01-26 16:35:25] -rw-r--r-- 2 boinc boinc    597749 Jan 26 15:13 input.tar.gz
[2026-01-26 16:35:25] -rw-r--r-- 2 boinc boinc     15845 Jan 26 15:13 start_atlas.sh
[2026-01-26 16:35:25] -rw------- 1 boinc boinc 178573442 Jan 26 16:34 HITS.pool.root.1
[2026-01-26 16:35:25] -rw------- 1 boinc boinc    993280 Jan 26 16:35 result.tar.gz
16:35:27 (1213022): run_atlas exited; CPU time 13922.467888
16:35:27 (1213022): called boinc_finish(0)

</stderr_txt>
]]>

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