Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:43 (3795810): wrapper (7.7.26015): starting
00:03:43 (3795810): wrapper: running run_atlas (--nthreads 8)
[2026-01-26 00:03:43] Arguments: --nthreads 8
[2026-01-26 00:03:43] Threads: 8
[2026-01-26 00:03:43] Checking for CVMFS
[2026-01-26 00:03:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 00:03:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 00:03:45] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 00:03:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 00:03:48] 2.13.3.0 10819 116011 251316 155532 2 723 28768811 32935936 25765 16776704 0 542784592 99.713 399305471 33463 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-26 00:03:48] CVMFS is ok
[2026-01-26 00:03:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 00:03:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 00:03:48] Further information can be found at the LHC@home message board.
[2026-01-26 00:03:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 00:03:48] Checking for apptainer binary...
[2026-01-26 00:03:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 00:03:48] Running /usr/bin/apptainer --version
[2026-01-26 00:03:48] apptainer version 1.4.5-2.el9
[2026-01-26 00:03:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 00:03:50] c-8-37.aglt2.org
[2026-01-26 00:03:50] apptainer works
[2026-01-26 00:03:50] Set ATHENA_PROC_NUMBER=8
[2026-01-26 00:03:50] Set ATHENA_CORE_NUMBER=8
[2026-01-26 00:03:50] Starting ATLAS job with PandaID=6983449379
[2026-01-26 00:03:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 01:13:50]  *** The last 200 lines of the pilot log: ***
[2026-01-27 01:13:50] 2026-01-27 05:37:50,227 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 01:13:50] 2026-01-27 05:37:50,422 | INFO     | fitting pss+swap vs Time
[2026-01-27 01:13:50] 2026-01-27 05:37:50,425 | INFO     | sum of square deviations: 937438914981.8656
[2026-01-27 01:13:50] 2026-01-27 05:37:51,201 | INFO     | sum of deviations: 2776718281292.339
[2026-01-27 01:13:50] 2026-01-27 05:37:51,203 | INFO     | mean x: 1769448176.009682
[2026-01-27 01:13:50] 2026-01-27 05:37:51,203 | INFO     | mean y: 2480926.4757952974
[2026-01-27 01:13:50] 2026-01-27 05:37:51,203 | INFO     | intersect: -5238670277.728814
[2026-01-27 01:13:50] 2026-01-27 05:37:51,325 | INFO     | chi2: 9.967200360523885
[2026-01-27 01:13:50] 2026-01-27 05:37:51,349 | INFO     | sum of square deviations: 927748063671.8354
[2026-01-27 01:13:50] 2026-01-27 05:37:52,203 | INFO     | time since job start (88270s) is within the limit (349056.0s)
[2026-01-27 01:13:50] 2026-01-27 05:37:52,633 | INFO     | sum of deviations: 2973360036931.8716
[2026-01-27 01:13:50] 2026-01-27 05:37:52,633 | INFO     | mean x: 1769448023.517002
[2026-01-27 01:13:50] 2026-01-27 05:37:52,634 | INFO     | mean y: 2484013.841776544
[2026-01-27 01:13:50] 2026-01-27 05:37:52,634 | INFO     | intersect: -5668458612.25304
[2026-01-27 01:13:50] 2026-01-27 05:37:52,690 | INFO     | monitor loop #4322: job 0:6983449379 is in state 'finished'
[2026-01-27 01:13:50] 2026-01-27 05:37:52,690 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-27 01:13:50] 2026-01-27 05:37:52,691 | INFO     | chi2: 8.2346918948125
[2026-01-27 01:13:50] 2026-01-27 05:37:52,691 | INFO     | current chi2=8.2346918948125 (change=17.382097309623294 %)
[2026-01-27 01:13:50] 2026-01-27 05:37:52,691 | INFO     | right removable region: 1440
[2026-01-27 01:13:50] 2026-01-27 05:37:52,693 | INFO     | sum of square deviations: 927746026387.7633
[2026-01-27 01:13:50] 2026-01-27 05:37:53,492 | INFO     | sum of deviations: 2315305875705.484
[2026-01-27 01:13:50] 2026-01-27 05:37:53,505 | INFO     | mean x: 1769448328.51839
[2026-01-27 01:13:50] 2026-01-27 05:37:53,505 | INFO     | mean y: 2488184.8119361554
[2026-01-27 01:13:50] 2026-01-27 05:37:53,505 | INFO     | intersect: -4413390725.202991
[2026-01-27 01:13:50] 2026-01-27 05:37:53,507 | INFO     | chi2: 6.320958039569491
[2026-01-27 01:13:50] 2026-01-27 05:37:53,508 | INFO     | current chi2=6.320958039569491 (change=36.58241220268541 %)
[2026-01-27 01:13:50] 2026-01-27 05:37:53,552 | INFO     | sum of square deviations: 918120513558.1476
[2026-01-27 01:13:50] 2026-01-27 05:37:54,319 | INFO     | time since job start (88272s) is within the limit (349056.0s)
[2026-01-27 01:13:50] 2026-01-27 05:37:54,752 | INFO     | sum of deviations: 1972470417980.2417
[2026-01-27 01:13:50] 2026-01-27 05:37:54,752 | INFO     | mean x: 1769448481.0243733
[2026-01-27 01:13:50] 2026-01-27 05:37:54,753 | INFO     | mean y: 2493615.8502785517
[2026-01-27 01:13:50] 2026-01-27 05:37:54,753 | INFO     | intersect: -3798951546.761922
[2026-01-27 01:13:50] 2026-01-27 05:37:54,804 | INFO     | chi2: 4.401968698065064
[2026-01-27 01:13:50] 2026-01-27 05:37:54,804 | INFO     | current chi2=4.401968698065064 (change=30.359153303841996 %)
[2026-01-27 01:13:50] 2026-01-27 05:37:54,806 | INFO     | sum of square deviations: 908561705688.366
[2026-01-27 01:13:50] 2026-01-27 05:37:55,513 | INFO     | monitor loop #4323: job 0:6983449379 is in state 'finished'
[2026-01-27 01:13:50] 2026-01-27 05:37:55,513 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-27 01:13:50] 2026-01-27 05:37:56,136 | INFO     | sum of deviations: 1729078927294.5852
[2026-01-27 01:13:50] 2026-01-27 05:37:56,136 | INFO     | mean x: 1769448633.5310972
[2026-01-27 01:13:50] 2026-01-27 05:37:56,137 | INFO     | mean y: 2497497.5150244585
[2026-01-27 01:13:50] 2026-01-27 05:37:56,137 | INFO     | intersect: -3364930742.1011233
[2026-01-27 01:13:50] 2026-01-27 05:37:56,257 | INFO     | chi2: 3.440007194971286
[2026-01-27 01:13:50] 2026-01-27 05:37:56,257 | INFO     | current chi2=3.440007194971286 (change=21.852983723319504 %)
[2026-01-27 01:13:50] 2026-01-27 05:37:56,257 | INFO     | left removable region: 30
[2026-01-27 01:13:50] 2026-01-27 05:37:56,259 | INFO     | sum of square deviations: 869141509907.6842
[2026-01-27 01:13:50] 2026-01-27 05:37:56,524 | INFO     | time since job start (88274s) is within the limit (349056.0s)
[2026-01-27 01:13:50] 2026-01-27 05:37:57,015 | INFO     | sum of deviations: 1458662943673.2124
[2026-01-27 01:13:50] 2026-01-27 05:37:57,015 | INFO     | mean x: 1769448908.055319
[2026-01-27 01:13:50] 2026-01-27 05:37:57,015 | INFO     | mean y: 2508265.304964539
[2026-01-27 01:13:50] 2026-01-27 05:37:57,015 | INFO     | intersect: -2967122713.6336284
[2026-01-27 01:13:50] 2026-01-27 05:37:57,017 | INFO     | chi2: 0.6060713983398914
[2026-01-27 01:13:50] 2026-01-27 05:37:57,017 | INFO     | current memory leak: 1.68 B/s (using 1410 data points, chi2=0.61)
[2026-01-27 01:13:50] 2026-01-27 05:37:57,036 | INFO     | could have reported an average CPU frequency of 2599 MHz (52 samples)
[2026-01-27 01:13:50] 2026-01-27 05:37:57,036 | INFO     | ..............................
[2026-01-27 01:13:50] 2026-01-27 05:37:57,036 | INFO     | . Timing measurements:
[2026-01-27 01:13:50] 2026-01-27 05:37:57,036 | INFO     | . get job = 0 s
[2026-01-27 01:13:50] 2026-01-27 05:37:57,037 | INFO     | . initial setup = 66 s
[2026-01-27 01:13:50] 2026-01-27 05:37:57,037 | INFO     | . payload setup = 51 s
[2026-01-27 01:13:50] 2026-01-27 05:37:57,037 | INFO     | . stage-in = 0 s
[2026-01-27 01:13:50] 2026-01-27 05:37:57,037 | INFO     | . payload execution = 88189 s
[2026-01-27 01:13:50] 2026-01-27 05:37:57,037 | INFO     | . stage-out = 9 s
[2026-01-27 01:13:50] 2026-01-27 05:37:57,037 | INFO     | . log creation = 3 s
[2026-01-27 01:13:50] 2026-01-27 05:37:57,037 | INFO     | ..............................
[2026-01-27 01:13:50] 2026-01-27 05:37:57,561 | INFO     | 
[2026-01-27 01:13:50] 2026-01-27 05:37:57,561 | INFO     | job summary report
[2026-01-27 01:13:50] 2026-01-27 05:37:57,561 | INFO     | --------------------------------------------------
[2026-01-27 01:13:50] 2026-01-27 05:37:57,561 | INFO     | PanDA job id: 6983449379
[2026-01-27 01:13:50] 2026-01-27 05:37:57,561 | INFO     | task id: 48298567
[2026-01-27 01:13:50] 2026-01-27 05:37:57,561 | INFO     | errors: (none)
[2026-01-27 01:13:50] 2026-01-27 05:37:57,562 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 01:13:50] 2026-01-27 05:37:57,562 | INFO     | pilot state: finished 
[2026-01-27 01:13:50] 2026-01-27 05:37:57,562 | INFO     | transexitcode: 0
[2026-01-27 01:13:50] 2026-01-27 05:37:57,562 | INFO     | exeerrorcode: 0
[2026-01-27 01:13:50] 2026-01-27 05:37:57,562 | INFO     | exeerrordiag: 
[2026-01-27 01:13:50] 2026-01-27 05:37:57,562 | INFO     | exitcode: 0
[2026-01-27 01:13:50] 2026-01-27 05:37:57,562 | INFO     | exitmsg: OK
[2026-01-27 01:13:50] 2026-01-27 05:37:57,562 | INFO     | cpuconsumptiontime: 62588 s
[2026-01-27 01:13:50] 2026-01-27 05:37:57,562 | INFO     | nevents: 400
[2026-01-27 01:13:50] 2026-01-27 05:37:57,562 | INFO     | neventsw: 0
[2026-01-27 01:13:50] 2026-01-27 05:37:57,563 | INFO     | pid: 3833452
[2026-01-27 01:13:50] 2026-01-27 05:37:57,563 | INFO     | pgrp: 3833452
[2026-01-27 01:13:50] 2026-01-27 05:37:57,563 | INFO     | corecount: 8
[2026-01-27 01:13:50] 2026-01-27 05:37:57,563 | INFO     | event service: False
[2026-01-27 01:13:50] 2026-01-27 05:37:57,563 | INFO     | sizes: {0: 2283932, 1: 2247920, 3: 2284393, 4: 2284421, 88247: 2347099, 88249: 2347098, 88259: 2356280, 88261: 2356336, 88271: 2356530}
[2026-01-27 01:13:50] 2026-01-27 05:37:57,563 | INFO     | --------------------------------------------------
[2026-01-27 01:13:50] 2026-01-27 05:37:57,563 | INFO     | 
[2026-01-27 01:13:50] 2026-01-27 05:37:57,563 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-01-27 01:13:50] 2026-01-27 05:37:57,771 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 01:13:50] 2026-01-27 05:37:57,772 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 01:13:50] 2026-01-27 05:37:57,772 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 01:13:50] 2026-01-27 05:37:57,772 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 01:13:50] 2026-01-27 05:37:57,772 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 01:13:50] 2026-01-27 05:37:57,772 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 01:13:50] 2026-01-27 05:37:57,772 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 01:13:50] 2026-01-27 05:37:57,772 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 01:13:50] 2026-01-27 05:37:57,772 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 01:13:50] 2026-01-27 05:37:57,773 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 01:13:50] 2026-01-27 05:37:57,773 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 01:13:50] 2026-01-27 05:37:57,773 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 01:13:50] 2026-01-27 05:37:57,773 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 01:13:50] 2026-01-27 05:37:57,773 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 01:13:50] 2026-01-27 05:37:57,773 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 01:13:50] 2026-01-27 05:37:57,773 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 01:13:50] 2026-01-27 05:37:57,773 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 01:13:50] 2026-01-27 05:37:57,773 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 01:13:50] 2026-01-27 05:37:57,774 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 01:13:50] 2026-01-27 05:37:57,774 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 01:13:50] 2026-01-27 05:37:57,774 | INFO     | job 6983449379 has completed (purged errors)
[2026-01-27 01:13:50] 2026-01-27 05:37:57,774 | INFO     | overall cleanup function is called
[2026-01-27 01:13:50] 2026-01-27 05:37:58,821 | INFO     | --- collectZombieJob: --- 10, [3833452]
[2026-01-27 01:13:50] 2026-01-27 05:37:58,821 | INFO     | zombie collector waiting for pid 3833452
[2026-01-27 01:13:50] 2026-01-27 05:37:58,821 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 01:13:50] 2026-01-27 05:37:58,821 | INFO     | collected zombie processes
[2026-01-27 01:13:50] 2026-01-27 05:37:58,821 | INFO     | will attempt to kill all subprocesses of pid=3833452
[2026-01-27 01:13:50] 2026-01-27 05:38:03,292 | INFO     | process IDs to be killed: [3833452] (in reverse order)
[2026-01-27 01:13:50] 2026-01-27 05:38:03,644 | INFO     | PID=3812148 has CPU usage=10.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-27 01:13:50] 2026-01-27 05:38:03,644 | INFO     | .. there are 35 such processes running
[2026-01-27 01:13:50] 2026-01-27 05:38:06,491 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 01:13:50] 2026-01-27 05:38:06,492 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 01:13:50] 2026-01-27 05:38:06,510 | INFO     | did not find any defunct processes belonging to 3833452
[2026-01-27 01:13:50] 2026-01-27 05:38:06,560 | INFO     | did not find any defunct processes belonging to 3833452
[2026-01-27 01:13:50] 2026-01-27 05:38:06,561 | INFO     | ready for new job
[2026-01-27 01:13:50] 2026-01-27 05:38:06,561 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 01:13:50] 2026-01-27 05:38:06,611 | INFO     | **************************************
[2026-01-27 01:13:50] 2026-01-27 05:38:06,611 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 01:13:50] 2026-01-27 05:38:06,611 | INFO     | **************************************
[2026-01-27 01:13:50] 2026-01-27 05:38:06,611 | INFO     | 
[2026-01-27 01:13:50] 2026-01-27 05:38:06,621 | INFO     | architecture information:
[2026-01-27 01:13:50] 2026-01-27 05:38:06,634 | INFO     | executing command: cat /etc/os-release
[2026-01-27 01:13:50] 2026-01-27 05:38:06,687 | INFO     | cat /etc/os-release:
[2026-01-27 01:13:50] NAME="CentOS Linux"
[2026-01-27 01:13:50] VERSION="7 (Core)"
[2026-01-27 01:13:50] ID="centos"
[2026-01-27 01:13:50] ID_LIKE="rhel fedora"
[2026-01-27 01:13:50] VERSION_ID="7"
[2026-01-27 01:13:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 01:13:50] ANSI_COLOR="0;31"
[2026-01-27 01:13:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 01:13:50] HOME_URL="https://www.centos.org/"
[2026-01-27 01:13:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 01:13:50] 
[2026-01-27 01:13:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 01:13:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 01:13:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 01:13:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 01:13:50] 
[2026-01-27 01:13:50] 2026-01-27 05:38:06,687 | INFO     | **************************************
[2026-01-27 01:13:50] 2026-01-27 05:38:07,192 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-01-27 01:13:50] 2026-01-27 05:38:07,308 | INFO     | sufficient remaining disk space (72883372032 B)
[2026-01-27 01:13:50] 2026-01-27 05:38:07,309 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 01:13:50] 2026-01-27 05:38:07,309 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 01:13:50] 2026-01-27 05:38:07,309 | INFO     | update_server=False
[2026-01-27 01:13:50] 2026-01-27 05:38:07,309 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 01:13:50] 2026-01-27 05:38:07,309 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 01:13:50] 2026-01-27 05:38:07,310 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 01:13:50] 2026-01-27 05:38:07,310 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 01:13:50] 2026-01-27 05:38:07,310 | INFO     | aborting loop
[2026-01-27 01:13:50] 2026-01-27 05:38:07,715 | INFO     | all data control threads have been joined
[2026-01-27 01:13:50] 2026-01-27 05:38:08,017 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 01:13:50] 2026-01-27 05:38:08,315 | INFO     | [job] retrieve thread has finished
[2026-01-27 01:13:50] 2026-01-27 05:38:08,316 | INFO     | [job] queue monitor thread has finished
[2026-01-27 01:13:50] 2026-01-27 05:38:08,317 | INFO     | [job] job monitor thread has finished
[2026-01-27 01:13:50] 2026-01-27 05:38:08,321 | INFO     | [payload] failed_post thread has finished
[2026-01-27 01:13:50] 2026-01-27 05:38:08,327 | INFO     | all job control threads have been joined
[2026-01-27 01:13:50] 2026-01-27 05:38:08,378 | INFO     | [payload] validate_post thread has finished
[2026-01-27 01:13:50] 2026-01-27 05:38:08,448 | INFO     | all payload control threads have been joined
[2026-01-27 01:13:50] 2026-01-27 05:38:08,518 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 01:13:50] 2026-01-27 05:38:08,518 | INFO     | [job] validate thread has finished
[2026-01-27 01:13:50] 2026-01-27 05:38:08,727 | INFO     | [data] control thread has finished
[2026-01-27 01:13:50] 2026-01-27 05:38:09,317 | INFO     | [data] copytool_out thread has finished
[2026-01-27 01:13:50] 2026-01-27 05:38:09,339 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 01:13:50] 2026-01-27 05:38:09,353 | INFO     | [job] control thread has finished
[2026-01-27 01:13:50] 2026-01-27 05:38:09,390 | INFO     | [data] copytool_in thread has finished
[2026-01-27 01:13:50] 2026-01-27 05:38:09,407 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 01:13:50] 2026-01-27 05:38:09,407 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 01:13:50] 2026-01-27 05:38:09,454 | INFO     | [payload] control thread has finished
[2026-01-27 01:13:50] 2026-01-27 05:38:12,090 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 01:13:50] 2026-01-27 05:38:42,506 | INFO     | [monitor] cgroup control has ended
[2026-01-27 01:13:50] 2026-01-27 05:38:43,497 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139866102748992)>', '<ExcThread(monitor, started 139865821034240)>']
[2026-01-27 01:13:50] 2026-01-27 05:38:44,959 | INFO     | PID=3812148 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 01:13:50] 2026-01-27 05:38:44,959 | INFO     | .. there are 35 such processes running
[2026-01-27 01:13:50] 2026-01-27 05:38:44,959 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 01:13:50] 2026-01-27 05:38:44,959 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 01:13:50] 2026-01-27 05:38:44,959 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 01:13:50] 2026-01-27 05:38:44,960 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 01:13:50] 2026-01-27 05:38:44,960 | INFO     | [monitor] control thread has ended
[2026-01-27 01:13:50] 2026-01-27 05:38:48,572 | INFO     | all workflow threads have been joined
[2026-01-27 01:13:50] 2026-01-27 05:38:48,572 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 01:13:50] 2026-01-27 05:38:48,572 | INFO     | traces error code: 0
[2026-01-27 01:13:50] 2026-01-27 05:38:48,572 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 01:13:50] 2026-01-27 05:38:53,850 [wrapper] ==== pilot stdout END ====
[2026-01-27 01:13:50] 2026-01-27 05:38:53,904 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 01:13:50] 2026-01-27 05:38:53,928 [wrapper] pilotpid: 3812148
[2026-01-27 01:13:50] 2026-01-27 05:38:53,941 [wrapper] Pilot exit status: 0
[2026-01-27 01:13:50] 2026-01-27 05:38:54,011 [wrapper] pandaids: 6983449379
[2026-01-27 01:13:50] 2026-01-27 05:38:54,453 [wrapper] cleanup supervisor_pilot  797967 3812149
[2026-01-27 01:13:50] 2026-01-27 05:38:54,479 [wrapper] Test setup, not cleaning
[2026-01-27 01:13:50] 2026-01-27 05:38:54,544 [wrapper] apfmon messages muted
[2026-01-27 01:13:50] 2026-01-27 05:38:54,573 [wrapper] ==== wrapper stdout END ====
[2026-01-27 01:13:50] 2026-01-27 05:38:54,588 [wrapper] ==== wrapper stderr END ====
[2026-01-27 01:13:50]  *** Error codes and diagnostics ***
[2026-01-27 01:13:50]     "exeErrorCode": 0,
[2026-01-27 01:13:50]     "exeErrorDiag": "",
[2026-01-27 01:13:50]     "pilotErrorCode": 0,
[2026-01-27 01:13:50]     "pilotErrorDiag": "",
[2026-01-27 01:13:50]  *** Listing of results directory ***
[2026-01-27 01:13:50] total 428084
[2026-01-27 01:13:50] -rw-r--r--. 1 boincer umatlas      5111 Jan 25 15:48 queuedata.json
[2026-01-27 01:13:50] -rw-r--r--. 1 boincer umatlas    584422 Jan 25 15:48 pilot3.tar.gz
[2026-01-27 01:13:50] -rwx------. 1 boincer umatlas     36322 Jan 25 15:48 runpilot2-wrapper.sh
[2026-01-27 01:13:50] -rw-r--r--. 1 boincer umatlas       100 Jan 26 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 01:13:50] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 26 00:03 run_atlas
[2026-01-27 01:13:50] -rw-r--r--. 1 boincer umatlas       105 Jan 26 00:03 job.xml
[2026-01-27 01:13:50] -rw-r--r--. 2 boincer umatlas 246208983 Jan 26 00:03 EVNT.48298565._000018.pool.root.1
[2026-01-27 01:13:50] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 00:03 start_atlas.sh
[2026-01-27 01:13:50] drwxrwx--x. 2 boincer umatlas      4096 Jan 26 00:03 shared
[2026-01-27 01:13:50] -rw-r--r--. 2 boincer umatlas    597771 Jan 26 00:03 input.tar.gz
[2026-01-27 01:13:50] -rw-r--r--. 1 boincer umatlas         0 Jan 26 00:03 boinc_lockfile
[2026-01-27 01:13:50] -rw-r--r--. 1 boincer umatlas      2614 Jan 26 00:03 pandaJob.out
[2026-01-27 01:13:50] -rw-------. 1 boincer umatlas        57 Jan 26 00:03 setup.sh.local
[2026-01-27 01:13:50] -rw-------. 1 boincer umatlas       440 Jan 26 00:06 workernode_map.json
[2026-01-27 01:13:50] -rw-------. 1 boincer umatlas   1004246 Jan 26 00:06 agis_schedconf.cvmfs.json
[2026-01-27 01:13:50] drwx------. 5 boincer umatlas      4096 Jan 26 00:06 pilot3
[2026-01-27 01:13:50] -rw-------. 1 boincer umatlas 166409579 Jan 27 00:35 HITS.48298567._000449.pool.root.1
[2026-01-27 01:13:50] -rw-r--r--. 1 boincer umatlas       530 Jan 27 00:35 boinc_task_state.xml
[2026-01-27 01:13:50] -rw-------. 1 boincer umatlas      1044 Jan 27 00:37 memory_monitor_summary.json
[2026-01-27 01:13:50] -rw-------. 1 boincer umatlas   1516246 Jan 27 00:37 agis_ddmendpoints.agis.ALL.json
[2026-01-27 01:13:50] -rw-------. 1 boincer umatlas   1302475 Jan 27 00:37 log.48298567._000449.job.log.tgz.1
[2026-01-27 01:13:50] -rw-------. 1 boincer umatlas        95 Jan 27 00:37 pilot_heartbeat.json
[2026-01-27 01:13:50] -rw-------. 1 boincer umatlas      6388 Jan 27 00:37 heartbeat.json
[2026-01-27 01:13:50] -rw-------. 1 boincer umatlas      4820 Jan 27 00:38 pilotlog.txt
[2026-01-27 01:13:50] -rw-------. 1 boincer umatlas   9599425 Jan 27 00:38 log.48298567._000449.job.log.1
[2026-01-27 01:13:50] -rw-------. 1 boincer umatlas       357 Jan 27 00:38 output.list
[2026-01-27 01:13:50] -rw-r--r--. 1 boincer umatlas       620 Jan 27 00:38 runtime_log
[2026-01-27 01:13:50] -rw-------. 1 boincer umatlas  10915840 Jan 27 00:38 result.tar.gz
[2026-01-27 01:13:50] -rw-r--r--. 1 boincer umatlas      9332 Jan 27 00:38 runtime_log.err
[2026-01-27 01:13:50] -rw-------. 1 boincer umatlas       655 Jan 27 00:38 0FpNDmUDM48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQi1KDmDuPwBn.diag
[2026-01-27 01:13:50] -rw-r--r--. 1 boincer umatlas      6660 Jan 27 01:13 init_data.xml
[2026-01-27 01:13:50] -rw-r--r--. 1 boincer umatlas      8192 Jan 27 01:13 boinc_mmap_file
[2026-01-27 01:13:50] -rw-r--r--. 1 boincer umatlas        28 Jan 27 01:13 wrapper_checkpoint.txt
[2026-01-27 01:13:50] -rw-r--r--. 1 boincer umatlas     21339 Jan 27 01:13 stderr.txt
[2026-01-27 01:13:50] HITS file was successfully produced:
[2026-01-27 01:13:50] -rw-------. 1 boincer umatlas 166409579 Jan 27 00:35 shared/HITS.pool.root.1
[2026-01-27 01:13:50]  *** Contents of shared directory: ***
[2026-01-27 01:13:50] total 414216
[2026-01-27 01:13:50] -rw-r--r--. 2 boincer umatlas 246208983 Jan 26 00:03 ATLAS.root_0
[2026-01-27 01:13:50] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 00:03 start_atlas.sh
[2026-01-27 01:13:50] -rw-r--r--. 2 boincer umatlas    597771 Jan 26 00:03 input.tar.gz
[2026-01-27 01:13:50] -rw-------. 1 boincer umatlas 166409579 Jan 27 00:35 HITS.pool.root.1
[2026-01-27 01:13:50] -rw-------. 1 boincer umatlas  10915840 Jan 27 00:38 result.tar.gz
01:13:52 (3795810): run_atlas exited; CPU time 66792.476928
01:13:52 (3795810): called boinc_finish(0)

</stderr_txt>
]]>

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