Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:41 (2149602): wrapper (7.7.26015): starting
00:01:41 (2149602): wrapper: running run_atlas (--nthreads 8)
[2026-01-26 00:01:41] Arguments: --nthreads 8
[2026-01-26 00:01:41] Threads: 8
[2026-01-26 00:01:41] Checking for CVMFS
[2026-01-26 00:01:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 00:01:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 00:01:43] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 00:01:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 00:01:44] 2.13.3.0 9955 117398 208968 155532 4 139 23896735 32935937 24628 16776704 0 572907154 99.731 391955732 32950 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-26 00:01:44] CVMFS is ok
[2026-01-26 00:01:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 00:01:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 00:01:44] Further information can be found at the LHC@home message board.
[2026-01-26 00:01:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 00:01:44] Checking for apptainer binary...
[2026-01-26 00:01:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 00:01:44] Running /usr/bin/apptainer --version
[2026-01-26 00:01:44] apptainer version 1.4.5-2.el9
[2026-01-26 00:01:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 00:01:46] c-5-1.aglt2.org
[2026-01-26 00:01:46] apptainer works
[2026-01-26 00:01:46] Set ATHENA_PROC_NUMBER=8
[2026-01-26 00:01:46] Set ATHENA_CORE_NUMBER=8
[2026-01-26 00:01:46] Starting ATLAS job with PandaID=6983771523
[2026-01-26 00:01:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 18:01:05]  *** The last 200 lines of the pilot log: ***
[2026-01-26 18:01:05] 2026-01-26 22:59:49,298 | INFO     | chi2: 11.01929611852367
[2026-01-26 18:01:05] 2026-01-26 22:59:49,299 | INFO     | sum of square deviations: 360987691276.98584
[2026-01-26 18:01:05] 2026-01-26 22:59:49,793 | INFO     | sum of deviations: 1802000839187.5742
[2026-01-26 18:01:05] 2026-01-26 22:59:49,793 | INFO     | mean x: 1769436000.4961977
[2026-01-26 18:01:05] 2026-01-26 22:59:49,793 | INFO     | mean y: 2456015.7690114067
[2026-01-26 18:01:05] 2026-01-26 22:59:49,794 | INFO     | intersect: -8830324809.814035
[2026-01-26 18:01:05] 2026-01-26 22:59:49,795 | INFO     | chi2: 9.52556170288315
[2026-01-26 18:01:05] 2026-01-26 22:59:49,795 | INFO     | current chi2=9.52556170288315 (change=13.555624602278543 %)
[2026-01-26 18:01:05] 2026-01-26 22:59:49,795 | INFO     | right removable region: 1051
[2026-01-26 18:01:05] 2026-01-26 22:59:49,796 | INFO     | sum of square deviations: 360986537638.9964
[2026-01-26 18:01:05] 2026-01-26 22:59:50,206 | INFO     | sum of deviations: 1338865270558.769
[2026-01-26 18:01:05] 2026-01-26 22:59:50,206 | INFO     | mean x: 1769436305.4980989
[2026-01-26 18:01:05] 2026-01-26 22:59:50,206 | INFO     | mean y: 2462082.8840304185
[2026-01-26 18:01:05] 2026-01-26 22:59:50,207 | INFO     | intersect: -6560211509.853574
[2026-01-26 18:01:05] 2026-01-26 22:59:50,208 | INFO     | chi2: 7.29206134802211
[2026-01-26 18:01:05] 2026-01-26 22:59:50,208 | INFO     | current chi2=7.29206134802211 (change=33.824617565508554 %)
[2026-01-26 18:01:05] 2026-01-26 22:59:50,235 | INFO     | sum of square deviations: 355862960418.9758
[2026-01-26 18:01:05] 2026-01-26 22:59:50,624 | INFO     | sum of deviations: 1071280075317.8456
[2026-01-26 18:01:05] 2026-01-26 22:59:50,624 | INFO     | mean x: 1769436458.0047755
[2026-01-26 18:01:05] 2026-01-26 22:59:50,625 | INFO     | mean y: 2470047.231136581
[2026-01-26 18:01:05] 2026-01-26 22:59:50,625 | INFO     | intersect: -5324192833.810923
[2026-01-26 18:01:05] 2026-01-26 22:59:50,626 | INFO     | chi2: 5.013967916539304
[2026-01-26 18:01:05] 2026-01-26 22:59:50,626 | INFO     | current chi2=5.013967916539304 (change=31.24073321325956 %)
[2026-01-26 18:01:05] 2026-01-26 22:59:50,685 | INFO     | sum of square deviations: 350788017794.33856
[2026-01-26 18:01:05] 2026-01-26 22:59:50,761 | INFO     | sum of deviations: 842882756478.8759
[2026-01-26 18:01:05] 2026-01-26 22:59:50,762 | INFO     | mean x: 1769436610.512476
[2026-01-26 18:01:05] 2026-01-26 22:59:50,762 | INFO     | mean y: 2476910.086372361
[2026-01-26 18:01:05] 2026-01-26 22:59:50,762 | INFO     | intersect: -4249172325.4294057
[2026-01-26 18:01:05] 2026-01-26 22:59:50,763 | INFO     | chi2: 3.38711173436908
[2026-01-26 18:01:05] 2026-01-26 22:59:50,764 | INFO     | current chi2=3.38711173436908 (change=32.446481693746016 %)
[2026-01-26 18:01:05] 2026-01-26 22:59:50,765 | INFO     | sum of square deviations: 345761477995.53265
[2026-01-26 18:01:05] 2026-01-26 22:59:50,810 | INFO     | sum of deviations: 700947587482.1493
[2026-01-26 18:01:05] 2026-01-26 22:59:50,810 | INFO     | mean x: 1769436763.021215
[2026-01-26 18:01:05] 2026-01-26 22:59:50,811 | INFO     | mean y: 2481214.675024108
[2026-01-26 18:01:05] 2026-01-26 22:59:50,811 | INFO     | intersect: -3584622928.4243674
[2026-01-26 18:01:05] 2026-01-26 22:59:50,812 | INFO     | chi2: 2.772829776696315
[2026-01-26 18:01:05] 2026-01-26 22:59:50,812 | INFO     | current chi2=2.772829776696315 (change=18.13586340951306 %)
[2026-01-26 18:01:05] 2026-01-26 22:59:50,812 | INFO     | left removable region: 40
[2026-01-26 18:01:05] 2026-01-26 22:59:50,814 | INFO     | sum of square deviations: 320397329978.1974
[2026-01-26 18:01:05] 2026-01-26 22:59:50,855 | INFO     | sum of deviations: 467788001326.934
[2026-01-26 18:01:05] 2026-01-26 22:59:50,855 | INFO     | mean x: 1769437190.0613253
[2026-01-26 18:01:05] 2026-01-26 22:59:50,855 | INFO     | mean y: 2496529.049455984
[2026-01-26 18:01:05] 2026-01-26 22:59:50,856 | INFO     | intersect: -2580925394.811954
[2026-01-26 18:01:05] 2026-01-26 22:59:50,857 | INFO     | chi2: 0.23506985905387542
[2026-01-26 18:01:05] 2026-01-26 22:59:50,857 | INFO     | current memory leak: 1.46 B/s (using 1011 data points, chi2=0.24)
[2026-01-26 18:01:05] 2026-01-26 22:59:50,858 | INFO     | could have reported an average CPU frequency of 2600 MHz (39 samples)
[2026-01-26 18:01:05] 2026-01-26 22:59:50,859 | INFO     | ..............................
[2026-01-26 18:01:05] 2026-01-26 22:59:50,859 | INFO     | . Timing measurements:
[2026-01-26 18:01:05] 2026-01-26 22:59:50,859 | INFO     | . get job = 0 s
[2026-01-26 18:01:05] 2026-01-26 22:59:50,859 | INFO     | . initial setup = 46 s
[2026-01-26 18:01:05] 2026-01-26 22:59:50,859 | INFO     | . payload setup = 63 s
[2026-01-26 18:01:05] 2026-01-26 22:59:50,859 | INFO     | . stage-in = 0 s
[2026-01-26 18:01:05] 2026-01-26 22:59:50,859 | INFO     | . payload execution = 64473 s
[2026-01-26 18:01:05] 2026-01-26 22:59:50,859 | INFO     | . stage-out = 7 s
[2026-01-26 18:01:05] 2026-01-26 22:59:50,859 | INFO     | . log creation = 2 s
[2026-01-26 18:01:05] 2026-01-26 22:59:50,859 | INFO     | ..............................
[2026-01-26 18:01:05] 2026-01-26 22:59:50,935 | INFO     | number of running child processes to parent process 2196893: 1
[2026-01-26 18:01:05] 2026-01-26 22:59:50,935 | INFO     | maximum number of monitored processes: 7
[2026-01-26 18:01:05] 2026-01-26 22:59:50,935 | INFO     | aborting job monitoring since job object (job id=6983771523) has expired
[2026-01-26 18:01:05] 2026-01-26 22:59:51,115 | INFO     | time since job start (64574s) is within the limit (349056.0s)
[2026-01-26 18:01:05] 2026-01-26 22:59:51,119 | INFO     | 64620s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-26 18:01:05] 2026-01-26 22:59:51,276 | INFO     | 
[2026-01-26 18:01:05] 2026-01-26 22:59:51,276 | INFO     | job summary report
[2026-01-26 18:01:05] 2026-01-26 22:59:51,276 | INFO     | --------------------------------------------------
[2026-01-26 18:01:05] 2026-01-26 22:59:51,276 | INFO     | PanDA job id: 6983771523
[2026-01-26 18:01:05] 2026-01-26 22:59:51,276 | INFO     | task id: 48310724
[2026-01-26 18:01:05] 2026-01-26 22:59:51,276 | INFO     | errors: (none)
[2026-01-26 18:01:05] 2026-01-26 22:59:51,276 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 18:01:05] 2026-01-26 22:59:51,277 | INFO     | pilot state: finished 
[2026-01-26 18:01:05] 2026-01-26 22:59:51,277 | INFO     | transexitcode: 0
[2026-01-26 18:01:05] 2026-01-26 22:59:51,277 | INFO     | exeerrorcode: 0
[2026-01-26 18:01:05] 2026-01-26 22:59:51,277 | INFO     | exeerrordiag: 
[2026-01-26 18:01:05] 2026-01-26 22:59:51,277 | INFO     | exitcode: 0
[2026-01-26 18:01:05] 2026-01-26 22:59:51,277 | INFO     | exitmsg: OK
[2026-01-26 18:01:05] 2026-01-26 22:59:51,277 | INFO     | cpuconsumptiontime: 48360 s
[2026-01-26 18:01:05] 2026-01-26 22:59:51,277 | INFO     | nevents: 400
[2026-01-26 18:01:05] 2026-01-26 22:59:51,277 | INFO     | neventsw: 0
[2026-01-26 18:01:05] 2026-01-26 22:59:51,277 | INFO     | pid: 2196893
[2026-01-26 18:01:05] 2026-01-26 22:59:51,277 | INFO     | pgrp: 2196893
[2026-01-26 18:01:05] 2026-01-26 22:59:51,278 | INFO     | corecount: 8
[2026-01-26 18:01:05] 2026-01-26 22:59:51,278 | INFO     | event service: False
[2026-01-26 18:01:05] 2026-01-26 22:59:51,278 | INFO     | sizes: {0: 2283710, 1: 2283766, 2: 2283794, 3: 2283822, 4: 2284311, 16: 2284311, 64542: 2335745, 64551: 2344743, 64554: 2344799, 64558: 2344993}
[2026-01-26 18:01:05] 2026-01-26 22:59:51,278 | INFO     | --------------------------------------------------
[2026-01-26 18:01:05] 2026-01-26 22:59:51,278 | INFO     | 
[2026-01-26 18:01:05] 2026-01-26 22:59:51,278 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-26 18:01:05] 2026-01-26 22:59:51,342 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 18:01:05] 2026-01-26 22:59:51,342 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 18:01:05] 2026-01-26 22:59:51,349 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 18:01:05] 2026-01-26 22:59:51,349 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 18:01:05] 2026-01-26 22:59:51,349 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 18:01:05] 2026-01-26 22:59:51,349 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 18:01:05] 2026-01-26 22:59:51,349 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 18:01:05] 2026-01-26 22:59:51,349 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 18:01:05] 2026-01-26 22:59:51,350 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 18:01:05] 2026-01-26 22:59:51,350 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 18:01:05] 2026-01-26 22:59:51,350 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 18:01:05] 2026-01-26 22:59:51,350 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 18:01:05] 2026-01-26 22:59:51,350 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 18:01:05] 2026-01-26 22:59:51,350 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 18:01:05] 2026-01-26 22:59:51,350 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 18:01:05] 2026-01-26 22:59:51,350 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 18:01:05] 2026-01-26 22:59:51,351 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 18:01:05] 2026-01-26 22:59:51,351 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 18:01:05] 2026-01-26 22:59:51,351 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 18:01:05] 2026-01-26 22:59:51,351 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 18:01:05] 2026-01-26 22:59:51,351 | INFO     | job 6983771523 has completed (purged errors)
[2026-01-26 18:01:05] 2026-01-26 22:59:51,351 | INFO     | overall cleanup function is called
[2026-01-26 18:01:05] 2026-01-26 22:59:52,440 | INFO     | --- collectZombieJob: --- 10, [2196893]
[2026-01-26 18:01:05] 2026-01-26 22:59:52,440 | INFO     | zombie collector waiting for pid 2196893
[2026-01-26 18:01:05] 2026-01-26 22:59:52,440 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 18:01:05] 2026-01-26 22:59:52,440 | INFO     | collected zombie processes
[2026-01-26 18:01:05] 2026-01-26 22:59:52,440 | INFO     | will attempt to kill all subprocesses of pid=2196893
[2026-01-26 18:01:05] 2026-01-26 22:59:58,971 | INFO     | PID=2169843 has CPU usage=13.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-26 18:01:05] 2026-01-26 22:59:58,971 | INFO     | .. there are 41 such processes running
[2026-01-26 18:01:05] 2026-01-26 22:59:59,079 | INFO     | process IDs to be killed: [2196893] (in reverse order)
[2026-01-26 18:01:05] 2026-01-26 23:00:00,010 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 18:01:05] 2026-01-26 23:00:00,010 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 18:01:05] 2026-01-26 23:00:00,062 | INFO     | did not find any defunct processes belonging to 2196893
[2026-01-26 18:01:05] 2026-01-26 23:00:00,199 | INFO     | did not find any defunct processes belonging to 2196893
[2026-01-26 18:01:05] 2026-01-26 23:00:00,200 | INFO     | ready for new job
[2026-01-26 18:01:05] 2026-01-26 23:00:00,200 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 18:01:05] 2026-01-26 23:00:00,255 | INFO     | **************************************
[2026-01-26 18:01:05] 2026-01-26 23:00:00,255 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 18:01:05] 2026-01-26 23:00:00,255 | INFO     | **************************************
[2026-01-26 18:01:05] 2026-01-26 23:00:00,255 | INFO     | 
[2026-01-26 18:01:05] 2026-01-26 23:00:00,310 | INFO     | architecture information:
[2026-01-26 18:01:05] 2026-01-26 23:00:00,333 | INFO     | executing command: cat /etc/os-release
[2026-01-26 18:01:05] 2026-01-26 23:00:00,407 | INFO     | cat /etc/os-release:
[2026-01-26 18:01:05] NAME="CentOS Linux"
[2026-01-26 18:01:05] VERSION="7 (Core)"
[2026-01-26 18:01:05] ID="centos"
[2026-01-26 18:01:05] ID_LIKE="rhel fedora"
[2026-01-26 18:01:05] VERSION_ID="7"
[2026-01-26 18:01:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 18:01:05] ANSI_COLOR="0;31"
[2026-01-26 18:01:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 18:01:05] HOME_URL="https://www.centos.org/"
[2026-01-26 18:01:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 18:01:05] 
[2026-01-26 18:01:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 18:01:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 18:01:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 18:01:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 18:01:05] 
[2026-01-26 18:01:05] 2026-01-26 23:00:00,407 | INFO     | **************************************
[2026-01-26 18:01:05] 2026-01-26 23:00:00,943 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-26 18:01:05] 2026-01-26 23:00:01,059 | INFO     | sufficient remaining disk space (74098671616 B)
[2026-01-26 18:01:05] 2026-01-26 23:00:01,060 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 18:01:05] 2026-01-26 23:00:01,060 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 18:01:05] 2026-01-26 23:00:01,060 | INFO     | update_server=False
[2026-01-26 18:01:05] 2026-01-26 23:00:01,060 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 18:01:05] 2026-01-26 23:00:01,060 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 18:01:05] 2026-01-26 23:00:01,060 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 18:01:05] 2026-01-26 23:00:01,159 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-26 18:01:05] 2026-01-26 23:00:01,159 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-26 18:01:05] 2026-01-26 23:00:01,160 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 18:01:05] 2026-01-26 23:00:01,160 | INFO     | will abort loop
[2026-01-26 18:01:05] 2026-01-26 23:00:01,237 | INFO     | all data control threads have been joined
[2026-01-26 18:01:05] 2026-01-26 23:00:01,528 | INFO     | all payload control threads have been joined
[2026-01-26 18:01:05] 2026-01-26 23:00:01,730 | INFO     | all job control threads have been joined
[2026-01-26 18:01:05] 2026-01-26 23:00:02,070 | INFO     | [job] queue monitor thread has finished
[2026-01-26 18:01:05] 2026-01-26 23:00:02,077 | INFO     | [job] retrieve thread has finished
[2026-01-26 18:01:05] 2026-01-26 23:00:02,166 | INFO     | [job] job monitor thread has finished
[2026-01-26 18:01:05] 2026-01-26 23:00:02,216 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 18:01:05] 2026-01-26 23:00:02,262 | INFO     | [data] control thread has finished
[2026-01-26 18:01:05] 2026-01-26 23:00:02,267 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 18:01:05] 2026-01-26 23:00:02,449 | INFO     | [data] copytool_in thread has finished
[2026-01-26 18:01:05] 2026-01-26 23:00:02,534 | INFO     | [payload] control thread has finished
[2026-01-26 18:01:05] 2026-01-26 23:00:02,707 | INFO     | [job] validate thread has finished
[2026-01-26 18:01:05] 2026-01-26 23:00:02,730 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 18:01:05] 2026-01-26 23:00:02,736 | INFO     | [job] control thread has finished
[2026-01-26 18:01:05] 2026-01-26 23:00:02,843 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 18:01:05] 2026-01-26 23:00:03,072 | INFO     | [data] copytool_out thread has finished
[2026-01-26 18:01:05] 2026-01-26 23:00:03,308 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 18:01:05] 2026-01-26 23:00:03,401 | INFO     | [payload] validate_post thread has finished
[2026-01-26 18:01:05] 2026-01-26 23:00:03,510 | INFO     | [payload] failed_post thread has finished
[2026-01-26 18:01:05] 2026-01-26 23:00:06,913 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 18:01:05] 2026-01-26 23:00:35,786 | INFO     | PID=2169843 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 18:01:05] 2026-01-26 23:00:35,808 | INFO     | .. there are 41 such processes running
[2026-01-26 18:01:05] 2026-01-26 23:00:35,809 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 18:01:05] 2026-01-26 23:00:35,809 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 18:01:05] 2026-01-26 23:00:35,809 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 18:01:05] 2026-01-26 23:00:54,954 | INFO     | [monitor] cgroup control has ended
[2026-01-26 18:01:05] 2026-01-26 23:00:56,838 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140089237882688)>', '<ExcThread(monitor, started 140088964302592)>']
[2026-01-26 18:01:05] 2026-01-26 23:00:57,150 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 18:01:05] 2026-01-26 23:00:57,154 | INFO     | [monitor] control thread has ended
[2026-01-26 18:01:05] 2026-01-26 23:01:01,864 | INFO     | all workflow threads have been joined
[2026-01-26 18:01:05] 2026-01-26 23:01:01,864 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 18:01:05] 2026-01-26 23:01:01,864 | INFO     | traces error code: 0
[2026-01-26 18:01:05] 2026-01-26 23:01:01,864 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 18:01:05] 2026-01-26 23:01:03,794 [wrapper] ==== pilot stdout END ====
[2026-01-26 18:01:05] 2026-01-26 23:01:03,827 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 18:01:05] 2026-01-26 23:01:03,896 [wrapper] pilotpid: 2169843
[2026-01-26 18:01:05] 2026-01-26 23:01:04,015 [wrapper] Pilot exit status: 0
[2026-01-26 18:01:05] 2026-01-26 23:01:04,297 [wrapper] pandaids: 6983771523
[2026-01-26 18:01:05] 2026-01-26 23:01:04,869 [wrapper] cleanup supervisor_pilot 2325914 2169844
[2026-01-26 18:01:05] 2026-01-26 23:01:04,873 [wrapper] Test setup, not cleaning
[2026-01-26 18:01:05] 2026-01-26 23:01:04,903 [wrapper] apfmon messages muted
[2026-01-26 18:01:05] 2026-01-26 23:01:04,922 [wrapper] ==== wrapper stdout END ====
[2026-01-26 18:01:05] 2026-01-26 23:01:04,925 [wrapper] ==== wrapper stderr END ====
[2026-01-26 18:01:05]  *** Error codes and diagnostics ***
[2026-01-26 18:01:05]     "exeErrorCode": 0,
[2026-01-26 18:01:05]     "exeErrorDiag": "",
[2026-01-26 18:01:05]     "pilotErrorCode": 0,
[2026-01-26 18:01:05]     "pilotErrorDiag": "",
[2026-01-26 18:01:05]  *** Listing of results directory ***
[2026-01-26 18:01:05] total 678208
[2026-01-26 18:01:05] -rw-r--r--. 1 boincer umatlas      5111 Jan 25 20:12 queuedata.json
[2026-01-26 18:01:05] -rw-r--r--. 1 boincer umatlas    584422 Jan 25 20:12 pilot3.tar.gz
[2026-01-26 18:01:05] -rwx------. 1 boincer umatlas     36322 Jan 25 20:12 runpilot2-wrapper.sh
[2026-01-26 18:01:05] -rw-r--r--. 1 boincer umatlas       100 Jan 26 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 18:01:05] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 26 00:01 run_atlas
[2026-01-26 18:01:05] -rw-r--r--. 1 boincer umatlas       105 Jan 26 00:01 job.xml
[2026-01-26 18:01:05] -rw-r--r--. 2 boincer umatlas 493148080 Jan 26 00:01 EVNT.48310721._000026.pool.root.1
[2026-01-26 18:01:05] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 00:01 start_atlas.sh
[2026-01-26 18:01:05] drwxrwx--x. 2 boincer umatlas      4096 Jan 26 00:01 shared
[2026-01-26 18:01:05] -rw-r--r--. 2 boincer umatlas    597769 Jan 26 00:01 input.tar.gz
[2026-01-26 18:01:05] -rw-r--r--. 1 boincer umatlas         0 Jan 26 00:01 boinc_lockfile
[2026-01-26 18:01:05] -rw-r--r--. 1 boincer umatlas      2532 Jan 26 00:01 pandaJob.out
[2026-01-26 18:01:05] -rw-------. 1 boincer umatlas        57 Jan 26 00:01 setup.sh.local
[2026-01-26 18:01:05] -rw-------. 1 boincer umatlas   1004246 Jan 26 00:02 agis_schedconf.cvmfs.json
[2026-01-26 18:01:05] -rw-------. 1 boincer umatlas       438 Jan 26 00:03 workernode_map.json
[2026-01-26 18:01:05] drwx------. 5 boincer umatlas      4096 Jan 26 00:03 pilot3
[2026-01-26 18:01:05] -rw-r--r--. 1 boincer umatlas      6659 Jan 26 17:56 init_data.xml
[2026-01-26 18:01:05] -rw-------. 1 boincer umatlas 181863793 Jan 26 17:58 HITS.48310724._010399.pool.root.1
[2026-01-26 18:01:05] -rw-r--r--. 1 boincer umatlas       532 Jan 26 17:58 boinc_task_state.xml
[2026-01-26 18:01:05] -rw-------. 1 boincer umatlas      1052 Jan 26 17:59 memory_monitor_summary.json
[2026-01-26 18:01:05] -rw-------. 1 boincer umatlas   1516246 Jan 26 17:59 agis_ddmendpoints.agis.ALL.json
[2026-01-26 18:01:05] -rw-------. 1 boincer umatlas   1019696 Jan 26 17:59 log.48310724._010399.job.log.tgz.1
[2026-01-26 18:01:05] -rw-------. 1 boincer umatlas      6400 Jan 26 17:59 heartbeat.json
[2026-01-26 18:01:05] -rw-------. 1 boincer umatlas        95 Jan 26 18:00 pilot_heartbeat.json
[2026-01-26 18:01:05] -rw-------. 1 boincer umatlas      5006 Jan 26 18:01 pilotlog.txt
[2026-01-26 18:01:05] -rw-r--r--. 1 boincer umatlas      8192 Jan 26 18:01 boinc_mmap_file
[2026-01-26 18:01:05] -rw-r--r--. 1 boincer umatlas        28 Jan 26 18:01 wrapper_checkpoint.txt
[2026-01-26 18:01:05] -rw-------. 1 boincer umatlas   6743752 Jan 26 18:01 log.48310724._010399.job.log.1
[2026-01-26 18:01:05] -rw-------. 1 boincer umatlas       357 Jan 26 18:01 output.list
[2026-01-26 18:01:05] -rw-r--r--. 1 boincer umatlas       620 Jan 26 18:01 runtime_log
[2026-01-26 18:01:05] -rw-------. 1 boincer umatlas   7782400 Jan 26 18:01 result.tar.gz
[2026-01-26 18:01:05] -rw-------. 1 boincer umatlas       658 Jan 26 18:01 xujNDmIKQ48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmv71KDmXnNu4m.diag
[2026-01-26 18:01:05] -rw-r--r--. 1 boincer umatlas      9327 Jan 26 18:01 runtime_log.err
[2026-01-26 18:01:05] -rw-r--r--. 1 boincer umatlas     21329 Jan 26 18:01 stderr.txt
[2026-01-26 18:01:06] HITS file was successfully produced:
[2026-01-26 18:01:06] -rw-------. 1 boincer umatlas 181863793 Jan 26 17:58 shared/HITS.pool.root.1
[2026-01-26 18:01:06]  *** Contents of shared directory: ***
[2026-01-26 18:01:06] total 667404
[2026-01-26 18:01:06] -rw-r--r--. 2 boincer umatlas 493148080 Jan 26 00:01 ATLAS.root_0
[2026-01-26 18:01:06] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 00:01 start_atlas.sh
[2026-01-26 18:01:06] -rw-r--r--. 2 boincer umatlas    597769 Jan 26 00:01 input.tar.gz
[2026-01-26 18:01:06] -rw-------. 1 boincer umatlas 181863793 Jan 26 17:58 HITS.pool.root.1
[2026-01-26 18:01:06] -rw-------. 1 boincer umatlas   7782400 Jan 26 18:01 result.tar.gz
18:01:07 (2149602): run_atlas exited; CPU time 51024.647770
18:01:07 (2149602): called boinc_finish(0)

</stderr_txt>
]]>

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