Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:41:00 (668025): wrapper (7.7.26015): starting
20:41:00 (668025): wrapper: running run_atlas (--nthreads 4)
[2026-01-26 20:41:00] Arguments: --nthreads 4
[2026-01-26 20:41:00] Threads: 4
[2026-01-26 20:41:00] Checking for CVMFS
[2026-01-26 20:41:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 20:41:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 20:41:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 20:41:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 20:41:00] 2.9.2.0 4135 2926 94688 155560 1 49 29286560 36864000 0 130560 0 1552268 99.988 112705 3567 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 20:41:00] CVMFS is ok
[2026-01-26 20:41:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 20:41:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 20:41:00] Further information can be found at the LHC@home message board.
[2026-01-26 20:41:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 20:41:00] Checking for apptainer binary...
[2026-01-26 20:41:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 20:41:00] Running /usr/bin/apptainer --version
[2026-01-26 20:41:00] apptainer version 1.4.1-1.1
[2026-01-26 20:41:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 20:41:00] atlasA237
[2026-01-26 20:41:00] apptainer works
[2026-01-26 20:41:00] Set ATHENA_PROC_NUMBER=4
[2026-01-26 20:41:00] Set ATHENA_CORE_NUMBER=4
[2026-01-26 20:41:00] Starting ATLAS job with PandaID=6983344286
[2026-01-26 20:41:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 21:54:23]  *** The last 200 lines of the pilot log: ***
[2026-01-26 21:54:23] 2026-01-26 20:53:20,505 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 21:54:23] 2026-01-26 20:53:20,505 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 21:54:23] 2026-01-26 20:53:20,505 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 21:54:23] 2026-01-26 20:53:20,505 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 21:54:23] 2026-01-26 20:53:20,505 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 21:54:23] 2026-01-26 20:53:20,505 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 21:54:23] 2026-01-26 20:53:20,505 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 21:54:23] 2026-01-26 20:53:20,505 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 21:54:23] 2026-01-26 20:53:20,505 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 21:54:23] 2026-01-26 20:53:20,505 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 21:54:23] 2026-01-26 20:53:20,505 | INFO     | job 6983344286 has completed (purged errors)
[2026-01-26 21:54:23] 2026-01-26 20:53:20,505 | INFO     | overall cleanup function is called
[2026-01-26 21:54:23] 2026-01-26 20:53:21,511 | INFO     | --- collectZombieJob: --- 10, [676727]
[2026-01-26 21:54:23] 2026-01-26 20:53:21,512 | INFO     | zombie collector waiting for pid 676727
[2026-01-26 21:54:23] 2026-01-26 20:53:21,512 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 21:54:23] 2026-01-26 20:53:21,512 | INFO     | collected zombie processes
[2026-01-26 21:54:23] 2026-01-26 20:53:21,512 | INFO     | will attempt to kill all subprocesses of pid=676727
[2026-01-26 21:54:23] 2026-01-26 20:53:21,577 | INFO     | process IDs to be killed: [676727] (in reverse order)
[2026-01-26 21:54:23] 2026-01-26 20:53:21,618 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 21:54:23] 2026-01-26 20:53:21,619 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 21:54:23] 2026-01-26 20:53:21,621 | INFO     | did not find any defunct processes belonging to 676727
[2026-01-26 21:54:23] 2026-01-26 20:53:21,624 | INFO     | did not find any defunct processes belonging to 676727
[2026-01-26 21:54:23] 2026-01-26 20:53:21,624 | INFO     | ready for new job
[2026-01-26 21:54:23] 2026-01-26 20:53:21,624 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 21:54:23] 2026-01-26 20:53:21,624 | INFO     | **************************************
[2026-01-26 21:54:23] 2026-01-26 20:53:21,624 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 21:54:23] 2026-01-26 20:53:21,625 | INFO     | **************************************
[2026-01-26 21:54:23] 2026-01-26 20:53:21,625 | INFO     | 
[2026-01-26 21:54:23] 2026-01-26 20:53:21,625 | INFO     | architecture information:
[2026-01-26 21:54:23] 2026-01-26 20:53:21,625 | INFO     | executing command: cat /etc/os-release
[2026-01-26 21:54:23] 2026-01-26 20:53:21,639 | INFO     | cat /etc/os-release:
[2026-01-26 21:54:23] NAME="CentOS Linux"
[2026-01-26 21:54:23] VERSION="7 (Core)"
[2026-01-26 21:54:23] ID="centos"
[2026-01-26 21:54:23] ID_LIKE="rhel fedora"
[2026-01-26 21:54:23] VERSION_ID="7"
[2026-01-26 21:54:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 21:54:23] ANSI_COLOR="0;31"
[2026-01-26 21:54:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 21:54:23] HOME_URL="https://www.centos.org/"
[2026-01-26 21:54:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 21:54:23] 
[2026-01-26 21:54:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 21:54:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 21:54:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 21:54:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 21:54:23] 
[2026-01-26 21:54:23] 2026-01-26 20:53:21,639 | INFO     | **************************************
[2026-01-26 21:54:23] 2026-01-26 20:53:22,142 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 21:54:23] 2026-01-26 20:53:22,158 | INFO     | sufficient remaining disk space (327372767232 B)
[2026-01-26 21:54:23] 2026-01-26 20:53:22,159 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 21:54:23] 2026-01-26 20:53:22,159 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 21:54:23] 2026-01-26 20:53:22,159 | INFO     | update_server=False
[2026-01-26 21:54:23] 2026-01-26 20:53:22,159 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 21:54:23] 2026-01-26 20:53:22,159 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 21:54:23] 2026-01-26 20:53:22,159 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 21:54:23] 2026-01-26 20:53:22,159 | INFO     | aborting loop
[2026-01-26 21:54:23] 2026-01-26 20:53:22,159 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 21:54:23] 2026-01-26 20:53:22,634 | INFO     | all data control threads have been joined
[2026-01-26 21:54:23] 2026-01-26 20:53:22,772 | INFO     | all job control threads have been joined
[2026-01-26 21:54:23] 2026-01-26 20:53:22,904 | INFO     | all payload control threads have been joined
[2026-01-26 21:54:23] 2026-01-26 20:53:23,165 | INFO     | [job] retrieve thread has finished
[2026-01-26 21:54:23] 2026-01-26 20:53:23,165 | INFO     | [job] job monitor thread has finished
[2026-01-26 21:54:23] 2026-01-26 20:53:23,165 | INFO     | [job] queue monitor thread has finished
[2026-01-26 21:54:23] 2026-01-26 20:53:23,189 | INFO     | [payload] failed_post thread has finished
[2026-01-26 21:54:23] 2026-01-26 20:53:23,613 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 21:54:23] 2026-01-26 20:53:23,640 | INFO     | [data] control thread has finished
[2026-01-26 21:54:23] 2026-01-26 20:53:23,775 | INFO     | [job] control thread has finished
[2026-01-26 21:54:23] 2026-01-26 20:53:23,910 | INFO     | [payload] control thread has finished
[2026-01-26 21:54:23] 2026-01-26 20:53:24,044 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 21:54:23] 2026-01-26 20:53:24,166 | INFO     | [data] copytool_out thread has finished
[2026-01-26 21:54:23] 2026-01-26 20:53:24,213 | INFO     | [job] validate thread has finished
[2026-01-26 21:54:23] 2026-01-26 20:53:24,316 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 21:54:23] 2026-01-26 20:53:24,406 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 21:54:23] 2026-01-26 20:53:24,503 | INFO     | [data] copytool_in thread has finished
[2026-01-26 21:54:23] 2026-01-26 20:53:24,554 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 21:54:23] 2026-01-26 20:53:24,584 | INFO     | [payload] validate_post thread has finished
[2026-01-26 21:54:23] 2026-01-26 20:53:27,620 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 21:54:23] 2026-01-26 20:53:52,964 | INFO     | PID=672183 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-26 21:54:23] 2026-01-26 20:53:52,965 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 21:54:23] 2026-01-26 20:53:52,965 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 21:54:23] 2026-01-26 20:53:52,965 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 21:54:23] 2026-01-26 20:54:18,286 | INFO     | [monitor] cgroup control has ended
[2026-01-26 21:54:23] 2026-01-26 20:54:18,437 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140145671456576)>', '<ExcThread(monitor, started 140144371820288)>']
[2026-01-26 21:54:23] 2026-01-26 20:54:19,080 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 21:54:23] 2026-01-26 20:54:19,081 | INFO     | [monitor] control thread has ended
[2026-01-26 21:54:23] 2026-01-26 20:54:23,463 | INFO     | all workflow threads have been joined
[2026-01-26 21:54:23] 2026-01-26 20:54:23,463 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 21:54:23] 2026-01-26 20:54:23,463 | INFO     | traces error code: 0
[2026-01-26 21:54:23] 2026-01-26 20:54:23,463 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 21:54:23] 2026-01-26 20:54:23,533 [wrapper] ==== pilot stdout END ====
[2026-01-26 21:54:23] 2026-01-26 20:54:23,537 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 21:54:23] 2026-01-26 20:54:23,541 [wrapper] pilotpid: 672183
[2026-01-26 21:54:23] 2026-01-26 20:54:23,544 [wrapper] Pilot exit status: 0
[2026-01-26 21:54:23] 2026-01-26 20:54:23,555 [wrapper] pandaids: 6983344286
[2026-01-26 21:54:23] 2026-01-26 20:54:23,583 [wrapper] cleanup supervisor_pilot  686354 672184
[2026-01-26 21:54:23] 2026-01-26 20:54:23,587 [wrapper] Test setup, not cleaning
[2026-01-26 21:54:23] 2026-01-26 20:54:23,590 [wrapper] apfmon messages muted
[2026-01-26 21:54:23] 2026-01-26 20:54:23,594 [wrapper] ==== wrapper stdout END ====
[2026-01-26 21:54:23] 2026-01-26 20:54:23,598 [wrapper] ==== wrapper stderr END ====
[2026-01-26 21:54:23]  *** Error codes and diagnostics ***
[2026-01-26 21:54:23]     "exeErrorCode": 0,
[2026-01-26 21:54:23]     "exeErrorDiag": "",
[2026-01-26 21:54:23]     "pilotErrorCode": 0,
[2026-01-26 21:54:23]     "pilotErrorDiag": "",
[2026-01-26 21:54:23]  *** Listing of results directory ***
[2026-01-26 21:54:23] total 670560
[2026-01-26 21:54:23] -rw-r--r-- 1 boinc boinc    584422 Jan 25 19:47 pilot3.tar.gz
[2026-01-26 21:54:23] -rwx------ 1 boinc boinc     36322 Jan 25 19:52 runpilot2-wrapper.sh
[2026-01-26 21:54:23] -rw-r--r-- 1 boinc boinc      5111 Jan 25 19:56 queuedata.json
[2026-01-26 21:54:23] -rw-r--r-- 1 boinc boinc       100 Jan 26 20:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 21:54:23] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 20:40 run_atlas
[2026-01-26 21:54:23] -rw-r--r-- 1 boinc boinc       105 Jan 26 20:40 job.xml
[2026-01-26 21:54:23] -rw-r--r-- 2 boinc boinc 499948440 Jan 26 20:41 EVNT.48317869._000012.pool.root.1
[2026-01-26 21:54:23] -rw-r--r-- 2 boinc boinc    597742 Jan 26 20:41 input.tar.gz
[2026-01-26 21:54:23] -rw-r--r-- 2 boinc boinc     15845 Jan 26 20:41 start_atlas.sh
[2026-01-26 21:54:23] drwxrwx--x 2 boinc boinc      4096 Jan 26 20:41 shared
[2026-01-26 21:54:23] -rw-r--r-- 1 boinc boinc         0 Jan 26 20:41 boinc_setup_complete
[2026-01-26 21:54:23] -rw-r--r-- 1 boinc boinc      6371 Jan 26 20:41 init_data.xml
[2026-01-26 21:54:23] -rw-r--r-- 1 boinc boinc         0 Jan 26 20:41 boinc_lockfile
[2026-01-26 21:54:23] -rw-r--r-- 1 boinc boinc      2511 Jan 26 20:41 pandaJob.out
[2026-01-26 21:54:23] -rw------- 1 boinc boinc   1006449 Jan 26 20:41 agis_schedconf.cvmfs.json
[2026-01-26 21:54:23] -rw------- 1 boinc boinc   1516246 Jan 26 20:41 agis_ddmendpoints.agis.ALL.json
[2026-01-26 21:54:23] -rw------- 1 boinc boinc       430 Jan 26 20:41 workernode_map.json
[2026-01-26 21:54:23] drwx------ 5 boinc boinc      4096 Jan 26 20:41 pilot3
[2026-01-26 21:54:23] -rw------- 1 boinc boinc 180987601 Jan 26 21:52 HITS.48317872._000568.pool.root.1
[2026-01-26 21:54:23] -rw-r--r-- 1 boinc boinc       530 Jan 26 21:53 boinc_task_state.xml
[2026-01-26 21:54:23] -rw------- 1 boinc boinc      1023 Jan 26 21:53 memory_monitor_summary.json
[2026-01-26 21:54:23] -rw------- 1 boinc boinc    257854 Jan 26 21:53 log.48317872._000568.job.log.tgz.1
[2026-01-26 21:54:23] -rw------- 1 boinc boinc      6334 Jan 26 21:53 heartbeat.json
[2026-01-26 21:54:23] -rw------- 1 boinc boinc        95 Jan 26 21:53 pilot_heartbeat.json
[2026-01-26 21:54:23] -rw-r--r-- 1 boinc boinc      8192 Jan 26 21:54 boinc_mmap_file
[2026-01-26 21:54:23] -rw-r--r-- 1 boinc boinc        27 Jan 26 21:54 wrapper_checkpoint.txt
[2026-01-26 21:54:23] -rw------- 1 boinc boinc      4747 Jan 26 21:54 pilotlog.txt
[2026-01-26 21:54:23] -rw------- 1 boinc boinc    638098 Jan 26 21:54 log.48317872._000568.job.log.1
[2026-01-26 21:54:23] -rw------- 1 boinc boinc       357 Jan 26 21:54 output.list
[2026-01-26 21:54:23] -rw-r--r-- 1 boinc boinc       620 Jan 26 21:54 runtime_log
[2026-01-26 21:54:23] -rw------- 1 boinc boinc    911360 Jan 26 21:54 result.tar.gz
[2026-01-26 21:54:23] -rw-r--r-- 1 boinc boinc      8911 Jan 26 21:54 runtime_log.err
[2026-01-26 21:54:23] -rw------- 1 boinc boinc       660 Jan 26 21:54 NCMLDmVOK48n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4d1KDmGkGxQn.diag
[2026-01-26 21:54:23] -rw-r--r-- 1 boinc boinc     11815 Jan 26 21:54 stderr.txt
[2026-01-26 21:54:23] HITS file was successfully produced:
[2026-01-26 21:54:23] -rw------- 1 boinc boinc 180987601 Jan 26 21:52 shared/HITS.pool.root.1
[2026-01-26 21:54:23]  *** Contents of shared directory: ***
[2026-01-26 21:54:23] total 666480
[2026-01-26 21:54:23] -rw-r--r-- 2 boinc boinc 499948440 Jan 26 20:41 ATLAS.root_0
[2026-01-26 21:54:23] -rw-r--r-- 2 boinc boinc    597742 Jan 26 20:41 input.tar.gz
[2026-01-26 21:54:23] -rw-r--r-- 2 boinc boinc     15845 Jan 26 20:41 start_atlas.sh
[2026-01-26 21:54:23] -rw------- 1 boinc boinc 180987601 Jan 26 21:52 HITS.pool.root.1
[2026-01-26 21:54:23] -rw------- 1 boinc boinc    911360 Jan 26 21:54 result.tar.gz
21:54:25 (668025): run_atlas exited; CPU time 16372.507319
21:54:25 (668025): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN