Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:20:52 (1443533): wrapper (7.7.26015): starting
15:20:52 (1443533): wrapper: running run_atlas (--nthreads 3)
[2026-01-26 15:20:52] Arguments: --nthreads 3
[2026-01-26 15:20:52] Threads: 3
[2026-01-26 15:20:52] Checking for CVMFS
[2026-01-26 15:20:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 15:20:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 15:20:52] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 15:20:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 15:20:52] 2.9.2.0 72808 8407 87872 155549 2 49 34253063 36864001 0 130560 0 3955691 99.988 257898 4457 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 15:20:52] CVMFS is ok
[2026-01-26 15:20:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 15:20:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 15:20:52] Further information can be found at the LHC@home message board.
[2026-01-26 15:20:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 15:20:52] Checking for apptainer binary...
[2026-01-26 15:20:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 15:20:52] Running /usr/bin/apptainer --version
[2026-01-26 15:20:52] apptainer version 1.4.1-1.1
[2026-01-26 15:20:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 15:20:53] thA371b
[2026-01-26 15:20:53] apptainer works
[2026-01-26 15:20:53] Set ATHENA_PROC_NUMBER=3
[2026-01-26 15:20:53] Set ATHENA_CORE_NUMBER=3
[2026-01-26 15:20:53] Starting ATLAS job with PandaID=6983306279
[2026-01-26 15:20:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 16:49:31]  *** The last 200 lines of the pilot log: ***
[2026-01-26 16:49:31] 2026-01-26 15:48:59,676 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 16:49:31] 2026-01-26 15:48:59,676 | INFO     | job 6983306279 has completed (purged errors)
[2026-01-26 16:49:31] 2026-01-26 15:48:59,676 | INFO     | overall cleanup function is called
[2026-01-26 16:49:31] 2026-01-26 15:49:00,683 | INFO     | --- collectZombieJob: --- 10, [1451996]
[2026-01-26 16:49:31] 2026-01-26 15:49:00,683 | INFO     | zombie collector waiting for pid 1451996
[2026-01-26 16:49:31] 2026-01-26 15:49:00,683 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 16:49:31] 2026-01-26 15:49:00,683 | INFO     | collected zombie processes
[2026-01-26 16:49:31] 2026-01-26 15:49:00,683 | INFO     | will attempt to kill all subprocesses of pid=1451996
[2026-01-26 16:49:31] 2026-01-26 15:49:00,725 | INFO     | process IDs to be killed: [1451996] (in reverse order)
[2026-01-26 16:49:31] 2026-01-26 15:49:00,748 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 16:49:31] 2026-01-26 15:49:00,748 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 16:49:31] 2026-01-26 15:49:00,749 | INFO     | did not find any defunct processes belonging to 1451996
[2026-01-26 16:49:31] 2026-01-26 15:49:00,750 | INFO     | did not find any defunct processes belonging to 1451996
[2026-01-26 16:49:31] 2026-01-26 15:49:00,751 | INFO     | ready for new job
[2026-01-26 16:49:31] 2026-01-26 15:49:00,751 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 16:49:31] 2026-01-26 15:49:00,751 | INFO     | **************************************
[2026-01-26 16:49:31] 2026-01-26 15:49:00,752 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 16:49:31] 2026-01-26 15:49:00,752 | INFO     | **************************************
[2026-01-26 16:49:31] 2026-01-26 15:49:00,752 | INFO     | 
[2026-01-26 16:49:31] 2026-01-26 15:49:00,752 | INFO     | architecture information:
[2026-01-26 16:49:31] 2026-01-26 15:49:00,752 | INFO     | executing command: cat /etc/os-release
[2026-01-26 16:49:31] 2026-01-26 15:49:00,761 | INFO     | cat /etc/os-release:
[2026-01-26 16:49:31] NAME="CentOS Linux"
[2026-01-26 16:49:31] VERSION="7 (Core)"
[2026-01-26 16:49:31] ID="centos"
[2026-01-26 16:49:31] ID_LIKE="rhel fedora"
[2026-01-26 16:49:31] VERSION_ID="7"
[2026-01-26 16:49:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 16:49:31] ANSI_COLOR="0;31"
[2026-01-26 16:49:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 16:49:31] HOME_URL="https://www.centos.org/"
[2026-01-26 16:49:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 16:49:31] 
[2026-01-26 16:49:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 16:49:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 16:49:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 16:49:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 16:49:31] 
[2026-01-26 16:49:31] 2026-01-26 15:49:00,761 | INFO     | **************************************
[2026-01-26 16:49:31] 2026-01-26 15:49:01,264 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 16:49:31] 2026-01-26 15:49:01,276 | INFO     | sufficient remaining disk space (223062523904 B)
[2026-01-26 16:49:31] 2026-01-26 15:49:01,277 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 16:49:31] 2026-01-26 15:49:01,277 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 16:49:31] 2026-01-26 15:49:01,277 | INFO     | update_server=False
[2026-01-26 16:49:31] 2026-01-26 15:49:01,277 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 16:49:31] 2026-01-26 15:49:01,277 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 16:49:31] 2026-01-26 15:49:01,534 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 16:49:31] 2026-01-26 15:49:01,535 | INFO     | aborting loop
[2026-01-26 16:49:31] 2026-01-26 15:49:02,025 | INFO     | all data control threads have been joined
[2026-01-26 16:49:31] 2026-01-26 15:49:02,283 | INFO     | [job] queue monitor thread has finished
[2026-01-26 16:49:31] 2026-01-26 15:49:02,283 | INFO     | [job] retrieve thread has finished
[2026-01-26 16:49:31] 2026-01-26 15:49:02,337 | INFO     | all payload control threads have been joined
[2026-01-26 16:49:31] 2026-01-26 15:49:02,370 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 16:49:31] 2026-01-26 15:49:02,459 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 16:49:31] 2026-01-26 15:49:02,467 | INFO     | [data] copytool_in thread has finished
[2026-01-26 16:49:31] 2026-01-26 15:49:02,540 | INFO     | [job] job monitor thread has finished
[2026-01-26 16:49:31] 2026-01-26 15:49:02,585 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 16:49:31] 2026-01-26 15:49:02,677 | INFO     | all job control threads have been joined
[2026-01-26 16:49:31] 2026-01-26 15:49:03,016 | INFO     | [payload] validate_post thread has finished
[2026-01-26 16:49:31] 2026-01-26 15:49:03,030 | INFO     | [data] control thread has finished
[2026-01-26 16:49:31] 2026-01-26 15:49:03,311 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 16:49:31] 2026-01-26 15:49:03,342 | INFO     | [payload] control thread has finished
[2026-01-26 16:49:31] 2026-01-26 15:49:03,462 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 16:49:31] 2026-01-26 15:49:03,622 | INFO     | [payload] failed_post thread has finished
[2026-01-26 16:49:31] 2026-01-26 15:49:03,682 | INFO     | [job] control thread has finished
[2026-01-26 16:49:31] 2026-01-26 15:49:03,688 | INFO     | [job] validate thread has finished
[2026-01-26 16:49:31] 2026-01-26 15:49:03,716 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 16:49:31] 2026-01-26 15:49:04,465 | INFO     | [data] copytool_out thread has finished
[2026-01-26 16:49:31] 2026-01-26 15:49:07,469 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 16:49:31] 2026-01-26 15:49:07,857 | INFO     | [monitor] cgroup control has ended
[2026-01-26 16:49:31] 2026-01-26 15:49:09,155 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140663332534080)>', '<ExcThread(monitor, started 140662854903552)>']
[2026-01-26 16:49:31] 2026-01-26 15:49:14,180 | INFO     | all workflow threads have been joined
[2026-01-26 16:49:31] 2026-01-26 15:49:14,181 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 16:49:31] 2026-01-26 15:49:14,181 | INFO     | traces error code: 0
[2026-01-26 16:49:31] 2026-01-26 15:49:14,181 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 16:49:31] 2026-01-26 15:49:31,674 | INFO     | PID=1447575 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 16:49:31] 2026-01-26 15:49:31,675 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 16:49:31] 2026-01-26 15:49:31,675 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 16:49:31] 2026-01-26 15:49:31,675 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 16:49:31] 2026-01-26 15:49:31,675 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 16:49:31] 2026-01-26 15:49:31,675 | INFO     | [monitor] control thread has ended
[2026-01-26 16:49:31] 2026-01-26 15:49:31,722 [wrapper] ==== pilot stdout END ====
[2026-01-26 16:49:31] 2026-01-26 15:49:31,725 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 16:49:31] 2026-01-26 15:49:31,727 [wrapper] pilotpid: 1447575
[2026-01-26 16:49:31] 2026-01-26 15:49:31,730 [wrapper] Pilot exit status: 0
[2026-01-26 16:49:31] 2026-01-26 15:49:31,736 [wrapper] pandaids: 6983306279
[2026-01-26 16:49:31] 2026-01-26 15:49:31,752 [wrapper] cleanup supervisor_pilot 1457080 1447576
[2026-01-26 16:49:31] 2026-01-26 15:49:31,754 [wrapper] Test setup, not cleaning
[2026-01-26 16:49:31] 2026-01-26 15:49:31,756 [wrapper] apfmon messages muted
[2026-01-26 16:49:31] 2026-01-26 15:49:31,759 [wrapper] ==== wrapper stdout END ====
[2026-01-26 16:49:31] 2026-01-26 15:49:31,761 [wrapper] ==== wrapper stderr END ====
[2026-01-26 16:49:31]  *** Error codes and diagnostics ***
[2026-01-26 16:49:31]     "exeErrorCode": 0,
[2026-01-26 16:49:31]     "exeErrorDiag": "",
[2026-01-26 16:49:31]     "pilotErrorCode": 0,
[2026-01-26 16:49:31]     "pilotErrorDiag": "",
[2026-01-26 16:49:31]  *** Listing of results directory ***
[2026-01-26 16:49:31] total 669380
[2026-01-26 16:49:31] -rw-r--r-- 1 boinc boinc    584422 Jan 25 19:47 pilot3.tar.gz
[2026-01-26 16:49:31] -rwx------ 1 boinc boinc     36322 Jan 25 19:49 runpilot2-wrapper.sh
[2026-01-26 16:49:31] -rw-r--r-- 1 boinc boinc      5111 Jan 25 19:52 queuedata.json
[2026-01-26 16:49:31] -rw-r--r-- 1 boinc boinc       100 Jan 26 15:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 16:49:31] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 15:20 run_atlas
[2026-01-26 16:49:31] -rw-r--r-- 1 boinc boinc       105 Jan 26 15:20 job.xml
[2026-01-26 16:49:31] -rw-r--r-- 2 boinc boinc 494821636 Jan 26 15:20 EVNT.48318040._000029.pool.root.1
[2026-01-26 16:49:31] -rw-r--r-- 2 boinc boinc    597765 Jan 26 15:20 input.tar.gz
[2026-01-26 16:49:31] -rw-r--r-- 2 boinc boinc     15845 Jan 26 15:20 start_atlas.sh
[2026-01-26 16:49:31] drwxrwx--x 2 boinc boinc      4096 Jan 26 15:20 shared
[2026-01-26 16:49:31] -rw-r--r-- 1 boinc boinc         0 Jan 26 15:20 boinc_setup_complete
[2026-01-26 16:49:31] -rw-r--r-- 1 boinc boinc      6440 Jan 26 15:20 init_data.xml
[2026-01-26 16:49:31] -rw-r--r-- 1 boinc boinc         0 Jan 26 15:20 boinc_lockfile
[2026-01-26 16:49:31] -rw-r--r-- 1 boinc boinc      2533 Jan 26 15:20 pandaJob.out
[2026-01-26 16:49:31] -rw------- 1 boinc boinc   1002189 Jan 26 15:20 agis_schedconf.cvmfs.json
[2026-01-26 16:49:31] -rw------- 1 boinc boinc   1516246 Jan 26 15:20 agis_ddmendpoints.agis.ALL.json
[2026-01-26 16:49:31] -rw------- 1 boinc boinc       420 Jan 26 15:21 workernode_map.json
[2026-01-26 16:49:31] drwx------ 5 boinc boinc      4096 Jan 26 15:21 pilot3
[2026-01-26 16:49:31] -rw-r--r-- 1 boinc boinc       530 Jan 26 16:48 boinc_task_state.xml
[2026-01-26 16:49:31] -rw------- 1 boinc boinc 184609955 Jan 26 16:48 HITS.48318042._001437.pool.root.1
[2026-01-26 16:49:31] -rw------- 1 boinc boinc      1020 Jan 26 16:48 memory_monitor_summary.json
[2026-01-26 16:49:31] -rw------- 1 boinc boinc    277910 Jan 26 16:48 log.48318042._001437.job.log.tgz.1
[2026-01-26 16:49:31] -rw------- 1 boinc boinc      6307 Jan 26 16:48 heartbeat.json
[2026-01-26 16:49:31] -rw-r--r-- 1 boinc boinc      8192 Jan 26 16:49 boinc_mmap_file
[2026-01-26 16:49:31] -rw-r--r-- 1 boinc boinc        27 Jan 26 16:49 wrapper_checkpoint.txt
[2026-01-26 16:49:31] -rw------- 1 boinc boinc       747 Jan 26 16:49 pilotlog.txt
[2026-01-26 16:49:31] -rw------- 1 boinc boinc        95 Jan 26 16:49 pilot_heartbeat.json
[2026-01-26 16:49:31] -rw------- 1 boinc boinc    769886 Jan 26 16:49 log.48318042._001437.job.log.1
[2026-01-26 16:49:31] -rw------- 1 boinc boinc       357 Jan 26 16:49 output.list
[2026-01-26 16:49:31] -rw-r--r-- 1 boinc boinc       620 Jan 26 16:49 runtime_log
[2026-01-26 16:49:31] -rw------- 1 boinc boinc   1064960 Jan 26 16:49 result.tar.gz
[2026-01-26 16:49:31] -rw-r--r-- 1 boinc boinc      8901 Jan 26 16:49 runtime_log.err
[2026-01-26 16:49:31] -rw------- 1 boinc boinc       658 Jan 26 16:49 ZTSNDmQMK48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQB8KDmhZ1wPo.diag
[2026-01-26 16:49:31] -rw-r--r-- 1 boinc boinc     10903 Jan 26 16:49 stderr.txt
[2026-01-26 16:49:31] HITS file was successfully produced:
[2026-01-26 16:49:31] -rw------- 1 boinc boinc 184609955 Jan 26 16:48 shared/HITS.pool.root.1
[2026-01-26 16:49:31]  *** Contents of shared directory: ***
[2026-01-26 16:49:31] total 665160
[2026-01-26 16:49:31] -rw-r--r-- 2 boinc boinc 494821636 Jan 26 15:20 ATLAS.root_0
[2026-01-26 16:49:31] -rw-r--r-- 2 boinc boinc    597765 Jan 26 15:20 input.tar.gz
[2026-01-26 16:49:31] -rw-r--r-- 2 boinc boinc     15845 Jan 26 15:20 start_atlas.sh
[2026-01-26 16:49:31] -rw------- 1 boinc boinc 184609955 Jan 26 16:48 HITS.pool.root.1
[2026-01-26 16:49:31] -rw------- 1 boinc boinc   1064960 Jan 26 16:49 result.tar.gz
16:49:32 (1443533): run_atlas exited; CPU time 15149.796100
16:49:32 (1443533): called boinc_finish(0)

</stderr_txt>
]]>

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