Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:09:34 (1513518): wrapper (7.7.26015): starting
09:09:34 (1513518): wrapper: running run_atlas (--nthreads 4)
[2026-01-28 09:09:34] Arguments: --nthreads 4
[2026-01-28 09:09:34] Threads: 4
[2026-01-28 09:09:34] Checking for CVMFS
[2026-01-28 09:09:34] No cvmfs_config command found, will try listing directly
[2026-01-28 09:09:34] CVMFS is ok
[2026-01-28 09:09:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 09:09:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 09:09:34] Further information can be found at the LHC@home message board.
[2026-01-28 09:09:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 09:09:34] Checking for apptainer binary...
[2026-01-28 09:09:34] which: no apptainer in ((null))
[2026-01-28 09:09:34] apptainer is not installed, using version from CVMFS
[2026-01-28 09:09:34] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 09:09:34] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2026-01-28 09:09:34] apptainer works
[2026-01-28 09:09:34] Set ATHENA_PROC_NUMBER=4
[2026-01-28 09:09:34] Set ATHENA_CORE_NUMBER=4
[2026-01-28 09:09:34] Starting ATLAS job with PandaID=6983466642
[2026-01-28 09:09:34] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 13:45:21]  *** The last 200 lines of the pilot log: ***
[2026-01-28 13:45:21] 2026-01-28 12:42:39,099 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-28 13:45:21] 2026-01-28 12:42:39,150 | INFO     | job 6983466642 has state=finished
[2026-01-28 13:45:21] 2026-01-28 12:42:39,150 | INFO     | preparing for final server update for job 6983466642 in state='finished'
[2026-01-28 13:45:21] 2026-01-28 12:42:39,150 | INFO     | reading metadata from: /scratch/boinc/var/slot124/slots/0/PanDA_Pilot-6983466642/jobReport.json
[2026-01-28 13:45:21] 2026-01-28 12:42:39,153 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot124/slots/0/workernode_map.json
[2026-01-28 13:45:21] 2026-01-28 12:42:39,153 | INFO     | this job has now completed (state=finished)
[2026-01-28 13:45:21] 2026-01-28 12:42:39,153 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-28 13:45:21] 2026-01-28 12:42:39,153 | INFO     | log transfer has been attempted: DONE
[2026-01-28 13:45:21] 2026-01-28 12:42:39,153 | INFO     | job 6983466642 has finished - writing final server update
[2026-01-28 13:45:21] 2026-01-28 12:42:39,153 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_956431/.job.ad'
[2026-01-28 13:45:21] 2026-01-28 12:42:39,154 | INFO     | total number of processed events: 400 (read)
[2026-01-28 13:45:21] 2026-01-28 12:42:39,175 | INFO     | using path: /scratch/boinc/var/slot124/slots/0/PanDA_Pilot-6983466642/memory_monitor_summary.json (trf name=prmon)
[2026-01-28 13:45:21] 2026-01-28 12:42:39,176 | INFO     | extracted standard info from prmon json
[2026-01-28 13:45:21] 2026-01-28 12:42:39,176 | INFO     | extracted standard memory fields from prmon json
[2026-01-28 13:45:21] 2026-01-28 12:42:39,176 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-28 13:45:21] 2026-01-28 12:42:39,176 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-28 13:45:21] 2026-01-28 12:42:39,176 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-28 13:45:21] 2026-01-28 12:42:39,181 | INFO     | fitting pss+swap vs Time
[2026-01-28 13:45:21] 2026-01-28 12:42:39,181 | INFO     | sum of square deviations: 5968658887.0
[2026-01-28 13:45:21] 2026-01-28 12:42:39,183 | INFO     | sum of deviations: 7774995431.499992
[2026-01-28 13:45:21] 2026-01-28 12:42:39,183 | INFO     | mean x: 1769595969.5
[2026-01-28 13:45:21] 2026-01-28 12:42:39,183 | INFO     | mean y: 2350217.212686567
[2026-01-28 13:45:21] 2026-01-28 12:42:39,183 | INFO     | intersect: -2302790826.855041
[2026-01-28 13:45:21] 2026-01-28 12:42:39,184 | INFO     | chi2: 1.4275559013422767
[2026-01-28 13:45:21] 2026-01-28 12:42:39,187 | INFO     | sum of square deviations: 5640782972.0
[2026-01-28 13:45:21] 2026-01-28 12:42:39,189 | INFO     | sum of deviations: 7789298193.000005
[2026-01-28 13:45:21] 2026-01-28 12:42:39,189 | INFO     | mean x: 1769595817.0
[2026-01-28 13:45:21] 2026-01-28 12:42:39,189 | INFO     | mean y: 2350223.866920152
[2026-01-28 13:45:21] 2026-01-28 12:42:39,189 | INFO     | intersect: -2441266126.5794144
[2026-01-28 13:45:21] 2026-01-28 12:42:39,189 | INFO     | chi2: 1.427934363768955
[2026-01-28 13:45:21] 2026-01-28 12:42:39,189 | INFO     | current chi2=1.427934363768955 (change=-0.026511215870595205 %)
[2026-01-28 13:45:21] 2026-01-28 12:42:39,190 | INFO     | right removable region: 262
[2026-01-28 13:45:21] 2026-01-28 12:42:39,190 | INFO     | sum of square deviations: 5640782972.0
[2026-01-28 13:45:21] 2026-01-28 12:42:39,192 | INFO     | sum of deviations: -28413596077.0
[2026-01-28 13:45:21] 2026-01-28 12:42:39,192 | INFO     | mean x: 1769596122.0
[2026-01-28 13:45:21] 2026-01-28 12:42:39,192 | INFO     | mean y: 2366896.152091255
[2026-01-28 13:45:21] 2026-01-28 12:42:39,192 | INFO     | intersect: 8916127570.781645
[2026-01-28 13:45:21] 2026-01-28 12:42:39,192 | INFO     | chi2: 0.054401899997228755
[2026-01-28 13:45:21] 2026-01-28 12:42:39,192 | INFO     | current chi2=0.054401899997228755 (change=96.18915799051535 %)
[2026-01-28 13:45:21] 2026-01-28 12:42:39,193 | INFO     | sum of square deviations: 5325139844.5
[2026-01-28 13:45:21] 2026-01-28 12:42:39,195 | INFO     | sum of deviations: -30548785573.5
[2026-01-28 13:45:21] 2026-01-28 12:42:39,195 | INFO     | mean x: 1769596274.5
[2026-01-28 13:45:21] 2026-01-28 12:42:39,195 | INFO     | mean y: 2367914.69379845
[2026-01-28 13:45:21] 2026-01-28 12:42:39,195 | INFO     | intersect: 10154029414.663435
[2026-01-28 13:45:21] 2026-01-28 12:42:39,195 | INFO     | chi2: 0.04183947419482529
[2026-01-28 13:45:21] 2026-01-28 12:42:39,195 | INFO     | current chi2=0.04183947419482529 (change=23.09188797274249 %)
[2026-01-28 13:45:21] 2026-01-28 12:42:39,195 | INFO     | left removable region: 20
[2026-01-28 13:45:21] 2026-01-28 12:42:39,196 | INFO     | sum of square deviations: 4394577280.5
[2026-01-28 13:45:21] 2026-01-28 12:42:39,197 | INFO     | sum of deviations: -24937757608.5
[2026-01-28 13:45:21] 2026-01-28 12:42:39,197 | INFO     | mean x: 1769596396.5
[2026-01-28 13:45:21] 2026-01-28 12:42:39,198 | INFO     | mean y: 2365780.384297521
[2026-01-28 13:45:21] 2026-01-28 12:42:39,198 | INFO     | intersect: 10044234015.72254
[2026-01-28 13:45:21] 2026-01-28 12:42:39,198 | INFO     | chi2: 0.04031730424538071
[2026-01-28 13:45:21] 2026-01-28 12:42:39,198 | INFO     | current memory leak: -5.67 B/s (using 242 data points, chi2=0.04)
[2026-01-28 13:45:21] 2026-01-28 12:42:39,199 | INFO     | could have reported an average CPU frequency of 2721 MHz (13 samples)
[2026-01-28 13:45:21] 2026-01-28 12:42:39,199 | INFO     | ..............................
[2026-01-28 13:45:21] 2026-01-28 12:42:39,199 | INFO     | . Timing measurements:
[2026-01-28 13:45:21] 2026-01-28 12:42:39,199 | INFO     | . get job = 0 s
[2026-01-28 13:45:21] 2026-01-28 12:42:39,199 | INFO     | . initial setup = 8 s
[2026-01-28 13:45:21] 2026-01-28 12:42:39,199 | INFO     | . payload setup = 9 s
[2026-01-28 13:45:21] 2026-01-28 12:42:39,199 | INFO     | . stage-in = 0 s
[2026-01-28 13:45:21] 2026-01-28 12:42:39,199 | INFO     | . payload execution = 16332 s
[2026-01-28 13:45:21] 2026-01-28 12:42:39,199 | INFO     | . stage-out = 1 s
[2026-01-28 13:45:21] 2026-01-28 12:42:39,199 | INFO     | . log creation = 0 s
[2026-01-28 13:45:21] 2026-01-28 12:42:39,199 | INFO     | ..............................
[2026-01-28 13:45:21] 2026-01-28 12:42:39,288 | INFO     | 
[2026-01-28 13:45:21] 2026-01-28 12:42:39,288 | INFO     | job summary report
[2026-01-28 13:45:21] 2026-01-28 12:42:39,288 | INFO     | --------------------------------------------------
[2026-01-28 13:45:21] 2026-01-28 12:42:39,288 | INFO     | PanDA job id: 6983466642
[2026-01-28 13:45:21] 2026-01-28 12:42:39,289 | INFO     | task id: 48329654
[2026-01-28 13:45:21] 2026-01-28 12:42:39,289 | INFO     | errors: (none)
[2026-01-28 13:45:21] 2026-01-28 12:42:39,289 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-28 13:45:21] 2026-01-28 12:42:39,289 | INFO     | pilot state: finished 
[2026-01-28 13:45:21] 2026-01-28 12:42:39,289 | INFO     | transexitcode: 0
[2026-01-28 13:45:21] 2026-01-28 12:42:39,289 | INFO     | exeerrorcode: 0
[2026-01-28 13:45:21] 2026-01-28 12:42:39,289 | INFO     | exeerrordiag: 
[2026-01-28 13:45:21] 2026-01-28 12:42:39,289 | INFO     | exitcode: 0
[2026-01-28 13:45:21] 2026-01-28 12:42:39,289 | INFO     | exitmsg: OK
[2026-01-28 13:45:21] 2026-01-28 12:42:39,289 | INFO     | cpuconsumptiontime: 63568 s
[2026-01-28 13:45:21] 2026-01-28 12:42:39,289 | INFO     | nevents: 400
[2026-01-28 13:45:21] 2026-01-28 12:42:39,290 | INFO     | neventsw: 0
[2026-01-28 13:45:21] 2026-01-28 12:42:39,290 | INFO     | pid: 1523786
[2026-01-28 13:45:21] 2026-01-28 12:42:39,290 | INFO     | pgrp: 1523786
[2026-01-28 13:45:21] 2026-01-28 12:42:39,290 | INFO     | corecount: 4
[2026-01-28 13:45:21] 2026-01-28 12:42:39,290 | INFO     | event service: False
[2026-01-28 13:45:21] 2026-01-28 12:42:39,290 | INFO     | sizes: {0: 2283936, 1: 2284397, 11: 2284397, 16346: 2316748, 16347: 2325770, 16348: 2325826, 16350: 2326148}
[2026-01-28 13:45:21] 2026-01-28 12:42:39,290 | INFO     | --------------------------------------------------
[2026-01-28 13:45:21] 2026-01-28 12:42:39,290 | INFO     | 
[2026-01-28 13:45:21] 2026-01-28 12:42:39,290 | INFO     | executing command: ls -lF /scratch/boinc/var/slot124/slots/0
[2026-01-28 13:45:21] 2026-01-28 12:42:39,323 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-28 13:45:21] 2026-01-28 12:42:39,323 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-28 13:45:21] 2026-01-28 12:42:39,323 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-28 13:45:21] 2026-01-28 12:42:39,324 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-28 13:45:21] 2026-01-28 12:42:39,324 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-28 13:45:21] 2026-01-28 12:42:39,324 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-28 13:45:21] 2026-01-28 12:42:39,324 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-28 13:45:21] 2026-01-28 12:42:39,324 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-28 13:45:21] 2026-01-28 12:42:39,324 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-28 13:45:21] 2026-01-28 12:42:39,324 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-28 13:45:21] 2026-01-28 12:42:39,324 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-28 13:45:21] 2026-01-28 12:42:39,324 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-28 13:45:21] 2026-01-28 12:42:39,324 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-28 13:45:21] 2026-01-28 12:42:39,325 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-28 13:45:21] 2026-01-28 12:42:39,325 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-28 13:45:21] 2026-01-28 12:42:39,325 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-28 13:45:21] 2026-01-28 12:42:39,325 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-28 13:45:21] 2026-01-28 12:42:39,325 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-28 13:45:21] 2026-01-28 12:42:39,325 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-28 13:45:21] 2026-01-28 12:42:39,325 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-28 13:45:21] 2026-01-28 12:42:39,325 | INFO     | job 6983466642 has completed (purged errors)
[2026-01-28 13:45:21] 2026-01-28 12:42:39,326 | INFO     | overall cleanup function is called
[2026-01-28 13:45:21] 2026-01-28 12:42:40,335 | INFO     | --- collectZombieJob: --- 10, [1523786]
[2026-01-28 13:45:21] 2026-01-28 12:42:40,336 | INFO     | zombie collector waiting for pid 1523786
[2026-01-28 13:45:21] 2026-01-28 12:42:40,336 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 13:45:21] 2026-01-28 12:42:40,336 | INFO     | collected zombie processes
[2026-01-28 13:45:21] 2026-01-28 12:42:40,336 | INFO     | will attempt to kill all subprocesses of pid=1523786
[2026-01-28 13:45:21] 2026-01-28 12:42:41,155 | INFO     | process IDs to be killed: [1523786] (in reverse order)
[2026-01-28 13:45:21] 2026-01-28 12:42:41,407 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 13:45:21] 2026-01-28 12:42:41,408 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 13:45:21] 2026-01-28 12:42:41,444 | INFO     | did not find any defunct processes belonging to 1523786
[2026-01-28 13:45:21] 2026-01-28 12:42:41,479 | INFO     | did not find any defunct processes belonging to 1523786
[2026-01-28 13:45:21] 2026-01-28 12:42:41,480 | INFO     | ready for new job
[2026-01-28 13:45:21] 2026-01-28 12:42:41,480 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 13:45:21] 2026-01-28 12:42:41,484 | INFO     | **************************************
[2026-01-28 13:45:21] 2026-01-28 12:42:41,484 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 13:45:21] 2026-01-28 12:42:41,484 | INFO     | **************************************
[2026-01-28 13:45:21] 2026-01-28 12:42:41,484 | INFO     | 
[2026-01-28 13:45:21] 2026-01-28 12:42:41,493 | INFO     | architecture information:
[2026-01-28 13:45:21] 2026-01-28 12:42:41,493 | INFO     | executing command: cat /etc/os-release
[2026-01-28 13:45:21] 2026-01-28 12:42:41,521 | INFO     | cat /etc/os-release:
[2026-01-28 13:45:21] NAME="CentOS Linux"
[2026-01-28 13:45:21] VERSION="7 (Core)"
[2026-01-28 13:45:21] ID="centos"
[2026-01-28 13:45:21] ID_LIKE="rhel fedora"
[2026-01-28 13:45:21] VERSION_ID="7"
[2026-01-28 13:45:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 13:45:21] ANSI_COLOR="0;31"
[2026-01-28 13:45:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 13:45:21] HOME_URL="https://www.centos.org/"
[2026-01-28 13:45:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 13:45:21] 
[2026-01-28 13:45:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 13:45:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 13:45:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 13:45:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 13:45:21] 
[2026-01-28 13:45:21] 2026-01-28 12:42:41,522 | INFO     | **************************************
[2026-01-28 13:45:21] 2026-01-28 12:42:42,024 | INFO     | executing command: df -mP /scratch/boinc/var/slot124/slots/0
[2026-01-28 13:45:21] 2026-01-28 12:42:42,051 | INFO     | sufficient remaining disk space (3310460338176 B)
[2026-01-28 13:45:21] 2026-01-28 12:42:42,052 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 13:45:21] 2026-01-28 12:42:42,052 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 13:45:21] 2026-01-28 12:42:42,052 | INFO     | update_server=False
[2026-01-28 13:45:21] 2026-01-28 12:42:42,053 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 13:45:21] 2026-01-28 12:42:42,053 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 13:45:21] 2026-01-28 12:42:42,469 | INFO     | all job control threads have been joined
[2026-01-28 13:45:21] 2026-01-28 12:42:42,604 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 13:45:21] 2026-01-28 12:42:42,607 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 13:45:21] 2026-01-28 12:42:42,607 | INFO     | aborting loop
[2026-01-28 13:45:21] 2026-01-28 12:42:42,877 | INFO     | all data control threads have been joined
[2026-01-28 13:45:21] 2026-01-28 12:42:43,025 | INFO     | all payload control threads have been joined
[2026-01-28 13:45:21] 2026-01-28 12:42:43,058 | INFO     | [job] retrieve thread has finished
[2026-01-28 13:45:21] 2026-01-28 12:42:43,195 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 13:45:21] 2026-01-28 12:42:43,474 | INFO     | [job] control thread has finished
[2026-01-28 13:45:21] 2026-01-28 12:42:43,612 | INFO     | [job] job monitor thread has finished
[2026-01-28 13:45:21] 2026-01-28 12:42:43,785 | INFO     | [payload] validate_post thread has finished
[2026-01-28 13:45:21] 2026-01-28 12:42:43,882 | INFO     | [data] control thread has finished
[2026-01-28 13:45:21] 2026-01-28 12:42:43,943 | INFO     | [data] copytool_in thread has finished
[2026-01-28 13:45:21] 2026-01-28 12:42:44,031 | INFO     | [payload] control thread has finished
[2026-01-28 13:45:21] 2026-01-28 12:42:44,058 | INFO     | [data] copytool_out thread has finished
[2026-01-28 13:45:21] 2026-01-28 12:42:44,193 | INFO     | [job] validate thread has finished
[2026-01-28 13:45:21] 2026-01-28 12:42:44,233 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 13:45:21] 2026-01-28 12:42:44,299 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 13:45:21] 2026-01-28 12:42:44,476 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 13:45:21] 2026-01-28 12:42:44,560 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 13:45:21] 2026-01-28 12:42:44,613 | INFO     | [payload] failed_post thread has finished
[2026-01-28 13:45:21] 2026-01-28 12:42:45,305 | INFO     | [job] queue monitor thread has finished
[2026-01-28 13:45:21] 2026-01-28 12:42:46,611 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 13:45:21] 2026-01-28 12:43:12,535 | INFO     | PID=1517781 has CPU usage=10.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-28 13:45:21] 2026-01-28 12:43:12,536 | INFO     | .. there are 7 such processes running
[2026-01-28 13:45:21] 2026-01-28 12:43:12,536 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 13:45:21] 2026-01-28 12:43:12,537 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 13:45:21] 2026-01-28 12:43:12,537 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 13:45:21] 2026-01-28 12:43:23,454 | INFO     | [monitor] cgroup control has ended
[2026-01-28 13:45:21] 2026-01-28 12:43:24,158 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22733198235456)>', '<ExcThread(monitor, started 22732961232640)>']
[2026-01-28 13:45:21] 2026-01-28 12:43:24,596 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 13:45:21] 2026-01-28 12:43:24,597 | INFO     | [monitor] control thread has ended
[2026-01-28 13:45:21] 2026-01-28 12:43:29,183 | INFO     | all workflow threads have been joined
[2026-01-28 13:45:21] 2026-01-28 12:43:29,184 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 13:45:21] 2026-01-28 12:43:29,184 | INFO     | traces error code: 0
[2026-01-28 13:45:21] 2026-01-28 12:43:29,184 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 13:45:21] 2026-01-28 12:43:29,364 [wrapper] ==== pilot stdout END ====
[2026-01-28 13:45:21] 2026-01-28 12:43:29,369 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 13:45:21] 2026-01-28 12:43:29,373 [wrapper] pilotpid: 1517781
[2026-01-28 13:45:21] 2026-01-28 12:43:29,377 [wrapper] Pilot exit status: 0
[2026-01-28 13:45:21] 2026-01-28 12:43:29,393 [wrapper] pandaids: 6983466642
[2026-01-28 13:45:21] 2026-01-28 12:43:29,570 [wrapper] cleanup supervisor_pilot 1807575 1517782
[2026-01-28 13:45:21] 2026-01-28 12:43:29,574 [wrapper] Test setup, not cleaning
[2026-01-28 13:45:21] 2026-01-28 12:43:29,579 [wrapper] apfmon messages muted
[2026-01-28 13:45:21] 2026-01-28 12:43:29,583 [wrapper] ==== wrapper stdout END ====
[2026-01-28 13:45:21] 2026-01-28 12:43:29,587 [wrapper] ==== wrapper stderr END ====
[2026-01-28 13:45:21]  *** Error codes and diagnostics ***
[2026-01-28 13:45:21]     "exeErrorCode": 0,
[2026-01-28 13:45:21]     "exeErrorDiag": "",
[2026-01-28 13:45:21]     "pilotErrorCode": 0,
[2026-01-28 13:45:21]     "pilotErrorDiag": "",
[2026-01-28 13:45:21]  *** Listing of results directory ***
[2026-01-28 13:45:21] total 469296
[2026-01-28 13:45:21] -rw-r--r-- 1 boinc boinc    584422 Jan 25 23:54 pilot3.tar.gz
[2026-01-28 13:45:21] -rwx------ 1 boinc boinc     36322 Jan 25 23:54 runpilot2-wrapper.sh
[2026-01-28 13:45:21] -rw-r--r-- 1 boinc boinc      5111 Jan 25 23:56 queuedata.json
[2026-01-28 13:45:21] -rw-r--r-- 1 boinc boinc       100 Jan 28 09:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 13:45:21] -rwxr-xr-x 1 boinc boinc      7986 Jan 28 09:09 run_atlas
[2026-01-28 13:45:21] -rw-r--r-- 1 boinc boinc       105 Jan 28 09:09 job.xml
[2026-01-28 13:45:21] -rw-r--r-- 2 boinc boinc 271534624 Jan 28 09:09 EVNT.48329652._000002.pool.root.1
[2026-01-28 13:45:21] -rw-r--r-- 1 boinc boinc      6691 Jan 28 09:09 init_data.xml
[2026-01-28 13:45:21] -rw-r--r-- 2 boinc boinc     15845 Jan 28 09:09 start_atlas.sh
[2026-01-28 13:45:21] drwxrwx--x 2 boinc boinc      4096 Jan 28 09:09 shared
[2026-01-28 13:45:21] -rw-r--r-- 2 boinc boinc    597770 Jan 28 09:09 input.tar.gz
[2026-01-28 13:45:21] -rw-r--r-- 1 boinc boinc         0 Jan 28 09:09 boinc_lockfile
[2026-01-28 13:45:21] -rw-r--r-- 1 boinc boinc      2610 Jan 28 09:09 pandaJob.out
[2026-01-28 13:45:21] -rw------- 1 boinc boinc   1004489 Jan 28 09:09 agis_schedconf.cvmfs.json
[2026-01-28 13:45:21] -rw------- 1 boinc boinc       443 Jan 28 09:09 workernode_map.json
[2026-01-28 13:45:21] drwx------ 5 boinc boinc      4096 Jan 28 09:09 pilot3
[2026-01-28 13:45:21] -rw------- 1 boinc boinc 199728009 Jan 28 13:42 HITS.48329654._000027.pool.root.1
[2026-01-28 13:45:21] -rw-r--r-- 1 boinc boinc       528 Jan 28 13:42 boinc_task_state.xml
[2026-01-28 13:45:21] -rw------- 1 boinc boinc      1033 Jan 28 13:42 memory_monitor_summary.json
[2026-01-28 13:45:21] -rw------- 1 boinc boinc   1516246 Jan 28 13:42 agis_ddmendpoints.agis.ALL.json
[2026-01-28 13:45:21] -rw------- 1 boinc boinc    416888 Jan 28 13:42 log.48329654._000027.job.log.tgz.1
[2026-01-28 13:45:21] -rw------- 1 boinc boinc      6354 Jan 28 13:42 heartbeat.json
[2026-01-28 13:45:21] -rw------- 1 boinc boinc        95 Jan 28 13:43 pilot_heartbeat.json
[2026-01-28 13:45:21] -rw------- 1 boinc boinc      4832 Jan 28 13:43 pilotlog.txt
[2026-01-28 13:45:21] -rw------- 1 boinc boinc   2262313 Jan 28 13:43 log.48329654._000027.job.log.1
[2026-01-28 13:45:21] -rw------- 1 boinc boinc       357 Jan 28 13:43 output.list
[2026-01-28 13:45:21] -rw-r--r-- 1 boinc boinc       620 Jan 28 13:43 runtime_log
[2026-01-28 13:45:21] -rw------- 1 boinc boinc   2693120 Jan 28 13:43 result.tar.gz
[2026-01-28 13:45:21] -rw-r--r-- 1 boinc boinc      9222 Jan 28 13:43 runtime_log.err
[2026-01-28 13:45:21] -rw------- 1 boinc boinc       666 Jan 28 13:43 KxJKDmeBO48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkZ8KDmWanf1m.diag
[2026-01-28 13:45:21] -rw-r--r-- 1 boinc boinc        26 Jan 28 13:45 wrapper_checkpoint.txt
[2026-01-28 13:45:21] -rw-r--r-- 1 boinc boinc      8192 Jan 28 13:45 boinc_mmap_file
[2026-01-28 13:45:21] -rw-r--r-- 1 boinc boinc     21155 Jan 28 13:45 stderr.txt
[2026-01-28 13:45:21] HITS file was successfully produced:
[2026-01-28 13:45:21] -rw------- 1 boinc boinc 199728009 Jan 28 13:42 shared/HITS.pool.root.1
[2026-01-28 13:45:21]  *** Contents of shared directory: ***
[2026-01-28 13:45:21] total 463460
[2026-01-28 13:45:21] -rw-r--r-- 2 boinc boinc 271534624 Jan 28 09:09 ATLAS.root_0
[2026-01-28 13:45:21] -rw-r--r-- 2 boinc boinc     15845 Jan 28 09:09 start_atlas.sh
[2026-01-28 13:45:21] -rw-r--r-- 2 boinc boinc    597770 Jan 28 09:09 input.tar.gz
[2026-01-28 13:45:21] -rw------- 1 boinc boinc 199728009 Jan 28 13:42 HITS.pool.root.1
[2026-01-28 13:45:21] -rw------- 1 boinc boinc   2693120 Jan 28 13:43 result.tar.gz
13:45:22 (1513518): run_atlas exited; CPU time 64805.234674
13:45:22 (1513518): called boinc_finish(0)

</stderr_txt>
]]>

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