Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:02:27 (476356): wrapper (7.7.26015): starting
10:02:27 (476356): wrapper: running run_atlas (--nthreads 2)
[2026-01-26 10:02:27] Arguments: --nthreads 2
[2026-01-26 10:02:27] Threads: 2
[2026-01-26 10:02:27] Checking for CVMFS
[2026-01-26 10:02:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 10:02:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 10:02:27] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 10:02:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 10:02:27] 2.9.2.0 2882 4354 60252 155540 3 50 21212739 36864001 0 130560 0 1414900 99.980 159093 4377 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 10:02:27] CVMFS is ok
[2026-01-26 10:02:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 10:02:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 10:02:27] Further information can be found at the LHC@home message board.
[2026-01-26 10:02:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 10:02:27] Checking for apptainer binary...
[2026-01-26 10:02:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 10:02:27] Running /usr/bin/apptainer --version
[2026-01-26 10:02:27] apptainer version 1.4.1-1.1
[2026-01-26 10:02:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 10:02:27] madmaxA275
[2026-01-26 10:02:27] apptainer works
[2026-01-26 10:02:27] Set ATHENA_PROC_NUMBER=2
[2026-01-26 10:02:27] Set ATHENA_CORE_NUMBER=2
[2026-01-26 10:02:27] Starting ATLAS job with PandaID=6983467017
[2026-01-26 10:02:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 12:32:04]  *** The last 200 lines of the pilot log: ***
[2026-01-26 12:32:04] 2026-01-26 11:31:13,808 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 12:32:04] 2026-01-26 11:31:13,808 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 12:32:04] 2026-01-26 11:31:13,808 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 12:32:04] 2026-01-26 11:31:13,808 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 12:32:04] 2026-01-26 11:31:13,808 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 12:32:04] 2026-01-26 11:31:13,808 | INFO     | job 6983467017 has completed (purged errors)
[2026-01-26 12:32:04] 2026-01-26 11:31:13,809 | INFO     | overall cleanup function is called
[2026-01-26 12:32:04] 2026-01-26 11:31:14,815 | INFO     | --- collectZombieJob: --- 10, [484786]
[2026-01-26 12:32:04] 2026-01-26 11:31:14,815 | INFO     | zombie collector waiting for pid 484786
[2026-01-26 12:32:04] 2026-01-26 11:31:14,815 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 12:32:04] 2026-01-26 11:31:14,816 | INFO     | collected zombie processes
[2026-01-26 12:32:04] 2026-01-26 11:31:14,816 | INFO     | will attempt to kill all subprocesses of pid=484786
[2026-01-26 12:32:04] 2026-01-26 11:31:14,847 | INFO     | process IDs to be killed: [484786] (in reverse order)
[2026-01-26 12:32:04] 2026-01-26 11:31:14,868 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 12:32:04] 2026-01-26 11:31:14,868 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 12:32:04] 2026-01-26 11:31:14,869 | INFO     | did not find any defunct processes belonging to 484786
[2026-01-26 12:32:04] 2026-01-26 11:31:14,869 | INFO     | did not find any defunct processes belonging to 484786
[2026-01-26 12:32:04] 2026-01-26 11:31:14,869 | INFO     | ready for new job
[2026-01-26 12:32:04] 2026-01-26 11:31:14,869 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 12:32:04] 2026-01-26 11:31:14,870 | INFO     | **************************************
[2026-01-26 12:32:04] 2026-01-26 11:31:14,870 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 12:32:04] 2026-01-26 11:31:14,870 | INFO     | **************************************
[2026-01-26 12:32:04] 2026-01-26 11:31:14,870 | INFO     | 
[2026-01-26 12:32:04] 2026-01-26 11:31:14,870 | INFO     | architecture information:
[2026-01-26 12:32:04] 2026-01-26 11:31:14,870 | INFO     | executing command: cat /etc/os-release
[2026-01-26 12:32:04] 2026-01-26 11:31:14,878 | INFO     | cat /etc/os-release:
[2026-01-26 12:32:04] NAME="CentOS Linux"
[2026-01-26 12:32:04] VERSION="7 (Core)"
[2026-01-26 12:32:04] ID="centos"
[2026-01-26 12:32:04] ID_LIKE="rhel fedora"
[2026-01-26 12:32:04] VERSION_ID="7"
[2026-01-26 12:32:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 12:32:04] ANSI_COLOR="0;31"
[2026-01-26 12:32:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 12:32:04] HOME_URL="https://www.centos.org/"
[2026-01-26 12:32:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 12:32:04] 
[2026-01-26 12:32:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 12:32:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 12:32:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 12:32:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 12:32:04] 
[2026-01-26 12:32:04] 2026-01-26 11:31:14,878 | INFO     | **************************************
[2026-01-26 12:32:04] 2026-01-26 11:31:15,382 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 12:32:04] 2026-01-26 11:31:15,394 | INFO     | sufficient remaining disk space (262416629760 B)
[2026-01-26 12:32:04] 2026-01-26 11:31:15,395 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 12:32:04] 2026-01-26 11:31:15,395 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 12:32:04] 2026-01-26 11:31:15,395 | INFO     | update_server=False
[2026-01-26 12:32:04] 2026-01-26 11:31:15,395 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 12:32:04] 2026-01-26 11:31:15,395 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 12:32:04] 2026-01-26 11:31:15,428 | WARNING  | process 484786 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 12:32:04] 2026-01-26 11:31:15,451 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 12:32:04] 2026-01-26 11:31:15,478 | INFO     | number of running child processes to parent process 484786: 1
[2026-01-26 12:32:04] 2026-01-26 11:31:15,478 | INFO     | maximum number of monitored processes: 6
[2026-01-26 12:32:04] 2026-01-26 11:31:15,478 | INFO     | aborting job monitoring since job object (job id=6983467017) has expired
[2026-01-26 12:32:04] 2026-01-26 11:31:15,478 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 12:32:04] 2026-01-26 11:31:15,478 | INFO     | will abort loop
[2026-01-26 12:32:04] 2026-01-26 11:31:15,646 | INFO     | all data control threads have been joined
[2026-01-26 12:32:04] 2026-01-26 11:31:15,708 | INFO     | all payload control threads have been joined
[2026-01-26 12:32:04] 2026-01-26 11:31:16,011 | INFO     | all job control threads have been joined
[2026-01-26 12:32:04] 2026-01-26 11:31:16,401 | INFO     | [job] queue monitor thread has finished
[2026-01-26 12:32:04] 2026-01-26 11:31:16,401 | INFO     | [job] retrieve thread has finished
[2026-01-26 12:32:04] 2026-01-26 11:31:16,482 | INFO     | [job] job monitor thread has finished
[2026-01-26 12:32:04] 2026-01-26 11:31:16,652 | INFO     | [data] control thread has finished
[2026-01-26 12:32:04] 2026-01-26 11:31:16,704 | INFO     | [payload] failed_post thread has finished
[2026-01-26 12:32:04] 2026-01-26 11:31:16,714 | INFO     | [payload] control thread has finished
[2026-01-26 12:32:04] 2026-01-26 11:31:16,834 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 12:32:04] 2026-01-26 11:31:17,017 | INFO     | [job] control thread has finished
[2026-01-26 12:32:04] 2026-01-26 11:31:17,020 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 12:32:04] 2026-01-26 11:31:17,284 | INFO     | [job] validate thread has finished
[2026-01-26 12:32:04] 2026-01-26 11:31:17,304 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 12:32:04] 2026-01-26 11:31:17,346 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 12:32:04] 2026-01-26 11:31:17,427 | INFO     | [data] copytool_in thread has finished
[2026-01-26 12:32:04] 2026-01-26 11:31:17,548 | INFO     | [payload] validate_post thread has finished
[2026-01-26 12:32:04] 2026-01-26 11:31:17,848 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 12:32:04] 2026-01-26 11:31:18,840 | INFO     | [data] copytool_out thread has finished
[2026-01-26 12:32:04] 2026-01-26 11:31:21,856 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 12:32:04] 2026-01-26 11:31:26,369 | INFO     | job.realtimelogging is not enabled
[2026-01-26 12:32:04] 2026-01-26 11:31:27,375 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 12:32:04] 2026-01-26 11:31:46,427 | INFO     | PID=480379 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-26 12:32:04] 2026-01-26 11:31:46,427 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 12:32:04] 2026-01-26 11:31:46,427 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 12:32:04] 2026-01-26 11:31:46,427 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 12:32:04] 2026-01-26 11:31:59,557 | INFO     | [monitor] cgroup control has ended
[2026-01-26 12:32:04] 2026-01-26 11:31:59,655 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140288506599232)>', '<ExcThread(monitor, started 140287624066816)>']
[2026-01-26 12:32:04] 2026-01-26 11:32:00,501 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 12:32:04] 2026-01-26 11:32:00,501 | INFO     | [monitor] control thread has ended
[2026-01-26 12:32:04] 2026-01-26 11:32:04,681 | INFO     | all workflow threads have been joined
[2026-01-26 12:32:04] 2026-01-26 11:32:04,682 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 12:32:04] 2026-01-26 11:32:04,682 | INFO     | traces error code: 0
[2026-01-26 12:32:04] 2026-01-26 11:32:04,683 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 12:32:04] 2026-01-26 11:32:04,725 [wrapper] ==== pilot stdout END ====
[2026-01-26 12:32:04] 2026-01-26 11:32:04,728 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 12:32:04] 2026-01-26 11:32:04,730 [wrapper] pilotpid: 480379
[2026-01-26 12:32:04] 2026-01-26 11:32:04,732 [wrapper] Pilot exit status: 0
[2026-01-26 12:32:04] 2026-01-26 11:32:04,738 [wrapper] pandaids: 6983467017
[2026-01-26 12:32:04] 2026-01-26 11:32:04,751 [wrapper] cleanup supervisor_pilot  489956 480380
[2026-01-26 12:32:04] 2026-01-26 11:32:04,753 [wrapper] Test setup, not cleaning
[2026-01-26 12:32:04] 2026-01-26 11:32:04,755 [wrapper] apfmon messages muted
[2026-01-26 12:32:04] 2026-01-26 11:32:04,757 [wrapper] ==== wrapper stdout END ====
[2026-01-26 12:32:04] 2026-01-26 11:32:04,759 [wrapper] ==== wrapper stderr END ====
[2026-01-26 12:32:04]  *** Error codes and diagnostics ***
[2026-01-26 12:32:04]     "exeErrorCode": 0,
[2026-01-26 12:32:04]     "exeErrorDiag": "",
[2026-01-26 12:32:04]     "pilotErrorCode": 0,
[2026-01-26 12:32:04]     "pilotErrorDiag": "",
[2026-01-26 12:32:04]  *** Listing of results directory ***
[2026-01-26 12:32:04] total 449544
[2026-01-26 12:32:04] -rw-r--r-- 1 boinc boinc    584422 Jan 25 23:54 pilot3.tar.gz
[2026-01-26 12:32:04] -rwx------ 1 boinc boinc     36322 Jan 25 23:54 runpilot2-wrapper.sh
[2026-01-26 12:32:04] -rw-r--r-- 1 boinc boinc      5111 Jan 25 23:56 queuedata.json
[2026-01-26 12:32:04] -rw-r--r-- 1 boinc boinc       100 Jan 26 10:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 12:32:04] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 10:02 run_atlas
[2026-01-26 12:32:04] -rw-r--r-- 1 boinc boinc       105 Jan 26 10:02 job.xml
[2026-01-26 12:32:04] -rw-r--r-- 2 boinc boinc 271689831 Jan 26 10:02 EVNT.48329435._000002.pool.root.1
[2026-01-26 12:32:04] drwxrwx--x 2 boinc boinc      4096 Jan 26 10:02 shared
[2026-01-26 12:32:04] -rw-r--r-- 2 boinc boinc    597774 Jan 26 10:02 input.tar.gz
[2026-01-26 12:32:04] -rw-r--r-- 2 boinc boinc     15845 Jan 26 10:02 start_atlas.sh
[2026-01-26 12:32:04] -rw-r--r-- 1 boinc boinc         0 Jan 26 10:02 boinc_setup_complete
[2026-01-26 12:32:04] -rw-r--r-- 1 boinc boinc      6208 Jan 26 10:02 init_data.xml
[2026-01-26 12:32:04] -rw-r--r-- 1 boinc boinc         0 Jan 26 10:02 boinc_lockfile
[2026-01-26 12:32:04] -rw-r--r-- 1 boinc boinc      2601 Jan 26 10:02 pandaJob.out
[2026-01-26 12:32:04] -rw------- 1 boinc boinc   1004254 Jan 26 10:02 agis_schedconf.cvmfs.json
[2026-01-26 12:32:04] -rw------- 1 boinc boinc   1516246 Jan 26 10:02 agis_ddmendpoints.agis.ALL.json
[2026-01-26 12:32:04] -rw------- 1 boinc boinc       429 Jan 26 10:02 workernode_map.json
[2026-01-26 12:32:04] drwx------ 5 boinc boinc      4096 Jan 26 10:02 pilot3
[2026-01-26 12:32:04] -rw-r--r-- 1 boinc boinc       529 Jan 26 12:30 boinc_task_state.xml
[2026-01-26 12:32:04] -rw------- 1 boinc boinc 181619311 Jan 26 12:30 HITS.48329437._000030.pool.root.1
[2026-01-26 12:32:04] -rw------- 1 boinc boinc      1014 Jan 26 12:31 memory_monitor_summary.json
[2026-01-26 12:32:04] -rw------- 1 boinc boinc    282502 Jan 26 12:31 log.48329437._000030.job.log.tgz.1
[2026-01-26 12:32:04] -rw------- 1 boinc boinc      6295 Jan 26 12:31 heartbeat.json
[2026-01-26 12:32:04] -rw-r--r-- 1 boinc boinc        27 Jan 26 12:31 wrapper_checkpoint.txt
[2026-01-26 12:32:04] -rw-r--r-- 1 boinc boinc      8192 Jan 26 12:31 boinc_mmap_file
[2026-01-26 12:32:04] -rw------- 1 boinc boinc        95 Jan 26 12:31 pilot_heartbeat.json
[2026-01-26 12:32:04] -rw------- 1 boinc boinc      5341 Jan 26 12:32 pilotlog.txt
[2026-01-26 12:32:04] -rw------- 1 boinc boinc   1268880 Jan 26 12:32 log.48329437._000030.job.log.1
[2026-01-26 12:32:04] -rw------- 1 boinc boinc       357 Jan 26 12:32 output.list
[2026-01-26 12:32:04] -rw-r--r-- 1 boinc boinc       620 Jan 26 12:32 runtime_log
[2026-01-26 12:32:04] -rw------- 1 boinc boinc   1566720 Jan 26 12:32 result.tar.gz
[2026-01-26 12:32:04] -rw-r--r-- 1 boinc boinc      8916 Jan 26 12:32 runtime_log.err
[2026-01-26 12:32:04] -rw------- 1 boinc boinc       661 Jan 26 12:32 aWLODmQBO48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjY8KDmb8Ywvm.diag
[2026-01-26 12:32:04] -rw-r--r-- 1 boinc boinc     12029 Jan 26 12:32 stderr.txt
[2026-01-26 12:32:04] HITS file was successfully produced:
[2026-01-26 12:32:04] -rw------- 1 boinc boinc 181619311 Jan 26 12:30 shared/HITS.pool.root.1
[2026-01-26 12:32:04]  *** Contents of shared directory: ***
[2026-01-26 12:32:04] total 444824
[2026-01-26 12:32:04] -rw-r--r-- 2 boinc boinc 271689831 Jan 26 10:02 ATLAS.root_0
[2026-01-26 12:32:04] -rw-r--r-- 2 boinc boinc    597774 Jan 26 10:02 input.tar.gz
[2026-01-26 12:32:04] -rw-r--r-- 2 boinc boinc     15845 Jan 26 10:02 start_atlas.sh
[2026-01-26 12:32:04] -rw------- 1 boinc boinc 181619311 Jan 26 12:30 HITS.pool.root.1
[2026-01-26 12:32:04] -rw------- 1 boinc boinc   1566720 Jan 26 12:32 result.tar.gz
12:32:06 (476356): run_atlas exited; CPU time 17427.033334
12:32:06 (476356): called boinc_finish(0)

</stderr_txt>
]]>

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