Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:06:13 (2940939): wrapper (7.7.26015): starting
22:06:13 (2940939): wrapper: running run_atlas (--nthreads 3)
[2026-01-26 22:06:13] Arguments: --nthreads 3
[2026-01-26 22:06:13] Threads: 3
[2026-01-26 22:06:13] Checking for CVMFS
[2026-01-26 22:06:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 22:06:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 22:06:14] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 22:06:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 22:06:14] 2.9.2.0 1599046 8973 93528 155561 0 49 17532200 36864001 0 130560 0 3835087 99.986 287414 6782 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 22:06:14] CVMFS is ok
[2026-01-26 22:06:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 22:06:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 22:06:14] Further information can be found at the LHC@home message board.
[2026-01-26 22:06:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 22:06:14] Checking for apptainer binary...
[2026-01-26 22:06:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 22:06:14] Running /usr/bin/apptainer --version
[2026-01-26 22:06:14] apptainer version 1.4.1-1.1
[2026-01-26 22:06:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 22:06:14] thA325a
[2026-01-26 22:06:14] apptainer works
[2026-01-26 22:06:14] Set ATHENA_PROC_NUMBER=3
[2026-01-26 22:06:14] Set ATHENA_CORE_NUMBER=3
[2026-01-26 22:06:14] Starting ATLAS job with PandaID=6983467053
[2026-01-26 22:06:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 23:49:37]  *** The last 200 lines of the pilot log: ***
[2026-01-26 23:49:37] 2026-01-26 22:48:53,925 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 23:49:37] 2026-01-26 22:48:53,925 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 23:49:37] 2026-01-26 22:48:53,925 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 23:49:37] 2026-01-26 22:48:53,925 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 23:49:37] 2026-01-26 22:48:53,925 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 23:49:37] 2026-01-26 22:48:53,925 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 23:49:37] 2026-01-26 22:48:53,925 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 23:49:37] 2026-01-26 22:48:53,925 | INFO     | job 6983467053 has completed (purged errors)
[2026-01-26 23:49:37] 2026-01-26 22:48:53,925 | INFO     | overall cleanup function is called
[2026-01-26 23:49:37] 2026-01-26 22:48:54,932 | INFO     | --- collectZombieJob: --- 10, [2949412]
[2026-01-26 23:49:37] 2026-01-26 22:48:54,932 | INFO     | zombie collector waiting for pid 2949412
[2026-01-26 23:49:37] 2026-01-26 22:48:54,932 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 23:49:37] 2026-01-26 22:48:54,932 | INFO     | collected zombie processes
[2026-01-26 23:49:37] 2026-01-26 22:48:54,932 | INFO     | will attempt to kill all subprocesses of pid=2949412
[2026-01-26 23:49:37] 2026-01-26 22:48:54,980 | INFO     | process IDs to be killed: [2949412] (in reverse order)
[2026-01-26 23:49:37] 2026-01-26 22:48:55,006 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 23:49:37] 2026-01-26 22:48:55,007 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 23:49:37] 2026-01-26 22:48:55,008 | INFO     | did not find any defunct processes belonging to 2949412
[2026-01-26 23:49:37] 2026-01-26 22:48:55,009 | INFO     | did not find any defunct processes belonging to 2949412
[2026-01-26 23:49:37] 2026-01-26 22:48:55,009 | INFO     | ready for new job
[2026-01-26 23:49:37] 2026-01-26 22:48:55,009 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 23:49:37] 2026-01-26 22:48:55,010 | INFO     | **************************************
[2026-01-26 23:49:37] 2026-01-26 22:48:55,010 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 23:49:37] 2026-01-26 22:48:55,010 | INFO     | **************************************
[2026-01-26 23:49:37] 2026-01-26 22:48:55,010 | INFO     | 
[2026-01-26 23:49:37] 2026-01-26 22:48:55,010 | INFO     | architecture information:
[2026-01-26 23:49:37] 2026-01-26 22:48:55,011 | INFO     | executing command: cat /etc/os-release
[2026-01-26 23:49:37] 2026-01-26 22:48:55,019 | INFO     | cat /etc/os-release:
[2026-01-26 23:49:37] NAME="CentOS Linux"
[2026-01-26 23:49:37] VERSION="7 (Core)"
[2026-01-26 23:49:37] ID="centos"
[2026-01-26 23:49:37] ID_LIKE="rhel fedora"
[2026-01-26 23:49:37] VERSION_ID="7"
[2026-01-26 23:49:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 23:49:37] ANSI_COLOR="0;31"
[2026-01-26 23:49:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 23:49:37] HOME_URL="https://www.centos.org/"
[2026-01-26 23:49:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 23:49:37] 
[2026-01-26 23:49:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 23:49:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 23:49:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 23:49:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 23:49:37] 
[2026-01-26 23:49:37] 2026-01-26 22:48:55,019 | INFO     | **************************************
[2026-01-26 23:49:37] 2026-01-26 22:48:55,523 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 23:49:37] 2026-01-26 22:48:55,536 | INFO     | sufficient remaining disk space (236871221248 B)
[2026-01-26 23:49:37] 2026-01-26 22:48:55,536 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 23:49:37] 2026-01-26 22:48:55,536 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 23:49:37] 2026-01-26 22:48:55,536 | INFO     | update_server=False
[2026-01-26 23:49:37] 2026-01-26 22:48:55,536 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 23:49:37] 2026-01-26 22:48:55,536 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 23:49:37] 2026-01-26 22:48:55,536 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 23:49:37] 2026-01-26 22:48:55,764 | INFO     | all data control threads have been joined
[2026-01-26 23:49:37] 2026-01-26 22:48:55,889 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 23:49:37] 2026-01-26 22:48:55,889 | INFO     | aborting loop
[2026-01-26 23:49:37] 2026-01-26 22:48:56,138 | INFO     | all job control threads have been joined
[2026-01-26 23:49:37] 2026-01-26 22:48:56,542 | INFO     | [job] retrieve thread has finished
[2026-01-26 23:49:37] 2026-01-26 22:48:56,542 | INFO     | [job] queue monitor thread has finished
[2026-01-26 23:49:37] 2026-01-26 22:48:56,558 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 23:49:37] 2026-01-26 22:48:56,619 | INFO     | [payload] validate_post thread has finished
[2026-01-26 23:49:37] 2026-01-26 22:48:56,654 | INFO     | [data] copytool_in thread has finished
[2026-01-26 23:49:37] 2026-01-26 22:48:56,770 | INFO     | [data] control thread has finished
[2026-01-26 23:49:37] 2026-01-26 22:48:56,849 | INFO     | all payload control threads have been joined
[2026-01-26 23:49:37] 2026-01-26 22:48:56,887 | INFO     | [payload] failed_post thread has finished
[2026-01-26 23:49:37] 2026-01-26 22:48:56,894 | INFO     | [job] job monitor thread has finished
[2026-01-26 23:49:37] 2026-01-26 22:48:57,144 | INFO     | [job] control thread has finished
[2026-01-26 23:49:37] 2026-01-26 22:48:57,542 | INFO     | [data] copytool_out thread has finished
[2026-01-26 23:49:37] 2026-01-26 22:48:57,694 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 23:49:37] 2026-01-26 22:48:57,855 | INFO     | [payload] control thread has finished
[2026-01-26 23:49:37] 2026-01-26 22:48:57,944 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 23:49:37] 2026-01-26 22:48:57,951 | INFO     | [job] validate thread has finished
[2026-01-26 23:49:37] 2026-01-26 22:48:58,222 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 23:49:37] 2026-01-26 22:49:02,228 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 23:49:37] 2026-01-26 22:49:05,644 | INFO     | job.realtimelogging is not enabled
[2026-01-26 23:49:37] 2026-01-26 22:49:06,650 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 23:49:37] 2026-01-26 22:49:25,947 | INFO     | PID=2944988 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 23:49:37] 2026-01-26 22:49:25,947 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 23:49:37] 2026-01-26 22:49:25,947 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 23:49:37] 2026-01-26 22:49:25,947 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 23:49:37] 2026-01-26 22:49:30,928 | INFO     | [monitor] cgroup control has ended
[2026-01-26 23:49:37] 2026-01-26 22:49:32,687 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139652954105664)>', '<ExcThread(monitor, started 139652338022144)>']
[2026-01-26 23:49:37] 2026-01-26 22:49:32,982 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 23:49:37] 2026-01-26 22:49:32,982 | INFO     | [monitor] control thread has ended
[2026-01-26 23:49:37] 2026-01-26 22:49:37,713 | INFO     | all workflow threads have been joined
[2026-01-26 23:49:37] 2026-01-26 22:49:37,713 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 23:49:37] 2026-01-26 22:49:37,713 | INFO     | traces error code: 0
[2026-01-26 23:49:37] 2026-01-26 22:49:37,714 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 23:49:37] 2026-01-26 22:49:37,764 [wrapper] ==== pilot stdout END ====
[2026-01-26 23:49:37] 2026-01-26 22:49:37,766 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 23:49:37] 2026-01-26 22:49:37,768 [wrapper] pilotpid: 2944988
[2026-01-26 23:49:37] 2026-01-26 22:49:37,770 [wrapper] Pilot exit status: 0
[2026-01-26 23:49:37] 2026-01-26 22:49:37,778 [wrapper] pandaids: 6983467053
[2026-01-26 23:49:37] 2026-01-26 22:49:37,794 [wrapper] cleanup supervisor_pilot 2955240 2944989
[2026-01-26 23:49:37] 2026-01-26 22:49:37,797 [wrapper] Test setup, not cleaning
[2026-01-26 23:49:37] 2026-01-26 22:49:37,799 [wrapper] apfmon messages muted
[2026-01-26 23:49:37] 2026-01-26 22:49:37,801 [wrapper] ==== wrapper stdout END ====
[2026-01-26 23:49:37] 2026-01-26 22:49:37,804 [wrapper] ==== wrapper stderr END ====
[2026-01-26 23:49:37]  *** Error codes and diagnostics ***
[2026-01-26 23:49:37]     "exeErrorCode": 0,
[2026-01-26 23:49:37]     "exeErrorDiag": "",
[2026-01-26 23:49:37]     "pilotErrorCode": 0,
[2026-01-26 23:49:37]     "pilotErrorDiag": "",
[2026-01-26 23:49:37]  *** Listing of results directory ***
[2026-01-26 23:49:37] total 455184
[2026-01-26 23:49:37] -rw-r--r-- 1 boinc boinc    584422 Jan 25 23:54 pilot3.tar.gz
[2026-01-26 23:49:37] -rwx------ 1 boinc boinc     36322 Jan 25 23:54 runpilot2-wrapper.sh
[2026-01-26 23:49:37] -rw-r--r-- 1 boinc boinc      5111 Jan 25 23:56 queuedata.json
[2026-01-26 23:49:37] -rw-r--r-- 1 boinc boinc       100 Jan 26 22:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 23:49:37] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 22:06 run_atlas
[2026-01-26 23:49:37] -rw-r--r-- 1 boinc boinc       105 Jan 26 22:06 job.xml
[2026-01-26 23:49:37] -rw-r--r-- 2 boinc boinc 271176067 Jan 26 22:06 EVNT.48329435._000003.pool.root.1
[2026-01-26 23:49:37] -rw-r--r-- 2 boinc boinc    597769 Jan 26 22:06 input.tar.gz
[2026-01-26 23:49:37] -rw-r--r-- 2 boinc boinc     15845 Jan 26 22:06 start_atlas.sh
[2026-01-26 23:49:37] drwxrwx--x 2 boinc boinc      4096 Jan 26 22:06 shared
[2026-01-26 23:49:37] -rw-r--r-- 1 boinc boinc         0 Jan 26 22:06 boinc_setup_complete
[2026-01-26 23:49:37] -rw-r--r-- 1 boinc boinc      6440 Jan 26 22:06 init_data.xml
[2026-01-26 23:49:37] -rw-r--r-- 1 boinc boinc         0 Jan 26 22:06 boinc_lockfile
[2026-01-26 23:49:37] -rw-r--r-- 1 boinc boinc      2601 Jan 26 22:06 pandaJob.out
[2026-01-26 23:49:37] -rw------- 1 boinc boinc   1006457 Jan 26 22:06 agis_schedconf.cvmfs.json
[2026-01-26 23:49:37] -rw------- 1 boinc boinc   1516246 Jan 26 22:06 agis_ddmendpoints.agis.ALL.json
[2026-01-26 23:49:37] -rw------- 1 boinc boinc       420 Jan 26 22:06 workernode_map.json
[2026-01-26 23:49:37] drwx------ 5 boinc boinc      4096 Jan 26 22:06 pilot3
[2026-01-26 23:49:37] -rw-r--r-- 1 boinc boinc       529 Jan 26 23:48 boinc_task_state.xml
[2026-01-26 23:49:37] -rw------- 1 boinc boinc 188669475 Jan 26 23:48 HITS.48329437._000066.pool.root.1
[2026-01-26 23:49:37] -rw------- 1 boinc boinc      1019 Jan 26 23:48 memory_monitor_summary.json
[2026-01-26 23:49:37] -rw------- 1 boinc boinc    274092 Jan 26 23:48 log.48329437._000066.job.log.tgz.1
[2026-01-26 23:49:37] -rw------- 1 boinc boinc      6289 Jan 26 23:48 heartbeat.json
[2026-01-26 23:49:37] -rw------- 1 boinc boinc        95 Jan 26 23:48 pilot_heartbeat.json
[2026-01-26 23:49:37] -rw-r--r-- 1 boinc boinc        27 Jan 26 23:49 wrapper_checkpoint.txt
[2026-01-26 23:49:37] -rw-r--r-- 1 boinc boinc      8192 Jan 26 23:49 boinc_mmap_file
[2026-01-26 23:49:37] -rw------- 1 boinc boinc      4820 Jan 26 23:49 pilotlog.txt
[2026-01-26 23:49:37] -rw------- 1 boinc boinc    892207 Jan 26 23:49 log.48329437._000066.job.log.1
[2026-01-26 23:49:37] -rw------- 1 boinc boinc       357 Jan 26 23:49 output.list
[2026-01-26 23:49:37] -rw-r--r-- 1 boinc boinc       620 Jan 26 23:49 runtime_log
[2026-01-26 23:49:37] -rw------- 1 boinc boinc   1187840 Jan 26 23:49 result.tar.gz
[2026-01-26 23:49:37] -rw-r--r-- 1 boinc boinc      8901 Jan 26 23:49 runtime_log.err
[2026-01-26 23:49:37] -rw------- 1 boinc boinc       658 Jan 26 23:49 M44NDmaBO48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmez1KDmL2s5mm.diag
[2026-01-26 23:49:37] -rw-r--r-- 1 boinc boinc     11612 Jan 26 23:49 stderr.txt
[2026-01-26 23:49:37] HITS file was successfully produced:
[2026-01-26 23:49:37] -rw------- 1 boinc boinc 188669475 Jan 26 23:48 shared/HITS.pool.root.1
[2026-01-26 23:49:37]  *** Contents of shared directory: ***
[2026-01-26 23:49:37] total 450840
[2026-01-26 23:49:37] -rw-r--r-- 2 boinc boinc 271176067 Jan 26 22:06 ATLAS.root_0
[2026-01-26 23:49:37] -rw-r--r-- 2 boinc boinc    597769 Jan 26 22:06 input.tar.gz
[2026-01-26 23:49:37] -rw-r--r-- 2 boinc boinc     15845 Jan 26 22:06 start_atlas.sh
[2026-01-26 23:49:37] -rw------- 1 boinc boinc 188669475 Jan 26 23:48 HITS.pool.root.1
[2026-01-26 23:49:37] -rw------- 1 boinc boinc   1187840 Jan 26 23:49 result.tar.gz
23:49:39 (2940939): run_atlas exited; CPU time 17861.848407
23:49:39 (2940939): called boinc_finish(0)

</stderr_txt>
]]>

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