Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:02:28 (178486): wrapper (7.7.26015): starting
12:02:28 (178486): wrapper: running run_atlas (--nthreads 3)
[2026-01-26 12:02:28] Arguments: --nthreads 3
[2026-01-26 12:02:28] Threads: 3
[2026-01-26 12:02:28] Checking for CVMFS
[2026-01-26 12:02:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 12:02:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 12:02:29] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 12:02:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 12:02:29] 2.9.2.0 2933211 7920 86508 155543 3 50 25689100 36864000 0 130560 0 3780483 99.988 249667 6837 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 12:02:29] CVMFS is ok
[2026-01-26 12:02:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 12:02:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 12:02:29] Further information can be found at the LHC@home message board.
[2026-01-26 12:02:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 12:02:29] Checking for apptainer binary...
[2026-01-26 12:02:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 12:02:29] Running /usr/bin/apptainer --version
[2026-01-26 12:02:29] apptainer version 1.4.1-1.1
[2026-01-26 12:02:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 12:02:29] thA323
[2026-01-26 12:02:29] apptainer works
[2026-01-26 12:02:29] Set ATHENA_PROC_NUMBER=3
[2026-01-26 12:02:29] Set ATHENA_CORE_NUMBER=3
[2026-01-26 12:02:29] Starting ATLAS job with PandaID=6983014586
[2026-01-26 12:02:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 13:26:52]  *** The last 200 lines of the pilot log: ***
[2026-01-26 13:26:52] 2026-01-26 12:25:52,643 | INFO     | job 6983014586 has completed (purged errors)
[2026-01-26 13:26:52] 2026-01-26 12:25:52,643 | INFO     | overall cleanup function is called
[2026-01-26 13:26:52] 2026-01-26 12:25:53,649 | INFO     | --- collectZombieJob: --- 10, [186954]
[2026-01-26 13:26:52] 2026-01-26 12:25:53,650 | INFO     | zombie collector waiting for pid 186954
[2026-01-26 13:26:52] 2026-01-26 12:25:53,650 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 13:26:52] 2026-01-26 12:25:53,650 | INFO     | collected zombie processes
[2026-01-26 13:26:52] 2026-01-26 12:25:53,650 | INFO     | will attempt to kill all subprocesses of pid=186954
[2026-01-26 13:26:52] 2026-01-26 12:25:53,719 | INFO     | process IDs to be killed: [186954] (in reverse order)
[2026-01-26 13:26:52] 2026-01-26 12:25:53,753 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 13:26:52] 2026-01-26 12:25:53,753 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 13:26:52] 2026-01-26 12:25:53,756 | INFO     | did not find any defunct processes belonging to 186954
[2026-01-26 13:26:52] 2026-01-26 12:25:53,757 | INFO     | did not find any defunct processes belonging to 186954
[2026-01-26 13:26:52] 2026-01-26 12:25:53,758 | INFO     | ready for new job
[2026-01-26 13:26:52] 2026-01-26 12:25:53,758 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 13:26:52] 2026-01-26 12:25:53,758 | INFO     | **************************************
[2026-01-26 13:26:52] 2026-01-26 12:25:53,758 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 13:26:52] 2026-01-26 12:25:53,758 | INFO     | **************************************
[2026-01-26 13:26:52] 2026-01-26 12:25:53,758 | INFO     | 
[2026-01-26 13:26:52] 2026-01-26 12:25:53,759 | INFO     | architecture information:
[2026-01-26 13:26:52] 2026-01-26 12:25:53,759 | INFO     | executing command: cat /etc/os-release
[2026-01-26 13:26:52] 2026-01-26 12:25:53,769 | INFO     | cat /etc/os-release:
[2026-01-26 13:26:52] NAME="CentOS Linux"
[2026-01-26 13:26:52] VERSION="7 (Core)"
[2026-01-26 13:26:52] ID="centos"
[2026-01-26 13:26:52] ID_LIKE="rhel fedora"
[2026-01-26 13:26:52] VERSION_ID="7"
[2026-01-26 13:26:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 13:26:52] ANSI_COLOR="0;31"
[2026-01-26 13:26:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 13:26:52] HOME_URL="https://www.centos.org/"
[2026-01-26 13:26:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 13:26:52] 
[2026-01-26 13:26:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 13:26:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 13:26:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 13:26:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 13:26:52] 
[2026-01-26 13:26:52] 2026-01-26 12:25:53,769 | INFO     | **************************************
[2026-01-26 13:26:52] 2026-01-26 12:25:54,270 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 13:26:52] 2026-01-26 12:25:54,284 | INFO     | sufficient remaining disk space (277402877952 B)
[2026-01-26 13:26:52] 2026-01-26 12:25:54,284 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 13:26:52] 2026-01-26 12:25:54,284 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 13:26:52] 2026-01-26 12:25:54,284 | INFO     | update_server=False
[2026-01-26 13:26:52] 2026-01-26 12:25:54,284 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 13:26:52] 2026-01-26 12:25:54,284 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 13:26:52] 2026-01-26 12:25:54,285 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 13:26:52] 2026-01-26 12:25:54,705 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-26 13:26:52] 2026-01-26 12:25:54,706 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-26 13:26:52] 2026-01-26 12:25:54,706 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 13:26:52] 2026-01-26 12:25:54,706 | INFO     | will abort loop
[2026-01-26 13:26:52] 2026-01-26 12:25:54,785 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 13:26:52] 2026-01-26 12:25:55,062 | INFO     | all data control threads have been joined
[2026-01-26 13:26:52] 2026-01-26 12:25:55,290 | INFO     | [job] retrieve thread has finished
[2026-01-26 13:26:52] 2026-01-26 12:25:55,290 | INFO     | [job] queue monitor thread has finished
[2026-01-26 13:26:52] 2026-01-26 12:25:55,454 | INFO     | [payload] validate_post thread has finished
[2026-01-26 13:26:52] 2026-01-26 12:25:55,711 | INFO     | [job] job monitor thread has finished
[2026-01-26 13:26:52] 2026-01-26 12:25:55,716 | INFO     | all job control threads have been joined
[2026-01-26 13:26:52] 2026-01-26 12:25:55,748 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 13:26:52] 2026-01-26 12:25:55,764 | INFO     | all payload control threads have been joined
[2026-01-26 13:26:52] 2026-01-26 12:25:55,820 | INFO     | [job] validate thread has finished
[2026-01-26 13:26:52] 2026-01-26 12:25:55,834 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 13:26:52] 2026-01-26 12:25:55,921 | INFO     | [payload] failed_post thread has finished
[2026-01-26 13:26:52] 2026-01-26 12:25:55,967 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 13:26:52] 2026-01-26 12:25:56,067 | INFO     | [data] control thread has finished
[2026-01-26 13:26:52] 2026-01-26 12:25:56,079 | INFO     | [data] copytool_in thread has finished
[2026-01-26 13:26:52] 2026-01-26 12:25:56,722 | INFO     | [job] control thread has finished
[2026-01-26 13:26:52] 2026-01-26 12:25:56,734 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 13:26:52] 2026-01-26 12:25:56,769 | INFO     | [payload] control thread has finished
[2026-01-26 13:26:52] 2026-01-26 12:25:56,791 | INFO     | [data] copytool_out thread has finished
[2026-01-26 13:26:52] 2026-01-26 12:25:58,292 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 13:26:52] 2026-01-26 12:26:24,414 | INFO     | PID=182526 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-26 13:26:52] 2026-01-26 12:26:24,415 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 13:26:52] 2026-01-26 12:26:24,415 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 13:26:52] 2026-01-26 12:26:24,415 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 13:26:52] 2026-01-26 12:26:45,568 | INFO     | [monitor] cgroup control has ended
[2026-01-26 13:26:52] 2026-01-26 12:26:47,159 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140245326260032)>', '<ExcThread(monitor, started 140244565354240)>']
[2026-01-26 13:26:52] 2026-01-26 12:26:47,539 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 13:26:52] 2026-01-26 12:26:47,539 | INFO     | [monitor] control thread has ended
[2026-01-26 13:26:52] 2026-01-26 12:26:52,185 | INFO     | all workflow threads have been joined
[2026-01-26 13:26:52] 2026-01-26 12:26:52,185 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 13:26:52] 2026-01-26 12:26:52,185 | INFO     | traces error code: 0
[2026-01-26 13:26:52] 2026-01-26 12:26:52,186 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 13:26:52] 2026-01-26 12:26:52,238 [wrapper] ==== pilot stdout END ====
[2026-01-26 13:26:52] 2026-01-26 12:26:52,241 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 13:26:52] 2026-01-26 12:26:52,243 [wrapper] pilotpid: 182526
[2026-01-26 13:26:52] 2026-01-26 12:26:52,246 [wrapper] Pilot exit status: 0
[2026-01-26 13:26:52] 2026-01-26 12:26:52,254 [wrapper] pandaids: 6983014586
[2026-01-26 13:26:52] 2026-01-26 12:26:52,277 [wrapper] cleanup supervisor_pilot  193853 182527
[2026-01-26 13:26:52] 2026-01-26 12:26:52,280 [wrapper] Test setup, not cleaning
[2026-01-26 13:26:52] 2026-01-26 12:26:52,282 [wrapper] apfmon messages muted
[2026-01-26 13:26:52] 2026-01-26 12:26:52,285 [wrapper] ==== wrapper stdout END ====
[2026-01-26 13:26:52] 2026-01-26 12:26:52,287 [wrapper] ==== wrapper stderr END ====
[2026-01-26 13:26:52]  *** Error codes and diagnostics ***
[2026-01-26 13:26:52]     "exeErrorCode": 0,
[2026-01-26 13:26:52]     "exeErrorDiag": "",
[2026-01-26 13:26:52]     "pilotErrorCode": 0,
[2026-01-26 13:26:52]     "pilotErrorDiag": "",
[2026-01-26 13:26:52]  *** Listing of results directory ***
[2026-01-26 13:26:52] total 674724
[2026-01-26 13:26:52] -rw-r--r-- 1 boinc boinc      5111 Jan 25 15:11 queuedata.json
[2026-01-26 13:26:52] -rw-r--r-- 1 boinc boinc    584422 Jan 25 15:11 pilot3.tar.gz
[2026-01-26 13:26:52] -rwx------ 1 boinc boinc     36322 Jan 25 15:11 runpilot2-wrapper.sh
[2026-01-26 13:26:52] -rw-r--r-- 1 boinc boinc       100 Jan 26 12:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 13:26:52] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 12:02 run_atlas
[2026-01-26 13:26:52] -rw-r--r-- 1 boinc boinc       105 Jan 26 12:02 job.xml
[2026-01-26 13:26:52] -rw-r--r-- 2 boinc boinc 501335290 Jan 26 12:02 EVNT.48317929._000012.pool.root.1
[2026-01-26 13:26:52] -rw-r--r-- 2 boinc boinc    597750 Jan 26 12:02 input.tar.gz
[2026-01-26 13:26:52] -rw-r--r-- 2 boinc boinc     15845 Jan 26 12:02 start_atlas.sh
[2026-01-26 13:26:52] drwxrwx--x 2 boinc boinc      4096 Jan 26 12:02 shared
[2026-01-26 13:26:52] -rw-r--r-- 1 boinc boinc         0 Jan 26 12:02 boinc_setup_complete
[2026-01-26 13:26:52] -rw-r--r-- 1 boinc boinc      6446 Jan 26 12:02 init_data.xml
[2026-01-26 13:26:52] -rw-r--r-- 1 boinc boinc         0 Jan 26 12:02 boinc_lockfile
[2026-01-26 13:26:52] -rw-r--r-- 1 boinc boinc      2506 Jan 26 12:02 pandaJob.out
[2026-01-26 13:26:52] -rw------- 1 boinc boinc   1004246 Jan 26 12:02 agis_schedconf.cvmfs.json
[2026-01-26 13:26:52] -rw------- 1 boinc boinc   1516246 Jan 26 12:02 agis_ddmendpoints.agis.ALL.json
[2026-01-26 13:26:52] -rw------- 1 boinc boinc       423 Jan 26 12:02 workernode_map.json
[2026-01-26 13:26:52] drwx------ 5 boinc boinc      4096 Jan 26 12:02 pilot3
[2026-01-26 13:26:52] -rw------- 1 boinc boinc 183637305 Jan 26 13:25 HITS.48317931._000594.pool.root.1
[2026-01-26 13:26:52] -rw-r--r-- 1 boinc boinc       530 Jan 26 13:25 boinc_task_state.xml
[2026-01-26 13:26:52] -rw------- 1 boinc boinc      1011 Jan 26 13:25 memory_monitor_summary.json
[2026-01-26 13:26:52] -rw------- 1 boinc boinc    279124 Jan 26 13:25 log.48317931._000594.job.log.tgz.1
[2026-01-26 13:26:52] -rw------- 1 boinc boinc      6283 Jan 26 13:25 heartbeat.json
[2026-01-26 13:26:52] -rw------- 1 boinc boinc        95 Jan 26 13:26 pilot_heartbeat.json
[2026-01-26 13:26:52] -rw-r--r-- 1 boinc boinc        27 Jan 26 13:26 wrapper_checkpoint.txt
[2026-01-26 13:26:52] -rw-r--r-- 1 boinc boinc      8192 Jan 26 13:26 boinc_mmap_file
[2026-01-26 13:26:52] -rw------- 1 boinc boinc      4933 Jan 26 13:26 pilotlog.txt
[2026-01-26 13:26:52] -rw------- 1 boinc boinc    728820 Jan 26 13:26 log.48317931._000594.job.log.1
[2026-01-26 13:26:52] -rw------- 1 boinc boinc       357 Jan 26 13:26 output.list
[2026-01-26 13:26:52] -rw-r--r-- 1 boinc boinc       620 Jan 26 13:26 runtime_log
[2026-01-26 13:26:52] -rw------- 1 boinc boinc   1024000 Jan 26 13:26 result.tar.gz
[2026-01-26 13:26:52] -rw-r--r-- 1 boinc boinc      8896 Jan 26 13:26 runtime_log.err
[2026-01-26 13:26:52] -rw------- 1 boinc boinc       657 Jan 26 13:26 Pt2MDmo0F48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtx0KDmaUVy1m.diag
[2026-01-26 13:26:52] -rw-r--r-- 1 boinc boinc     11028 Jan 26 13:26 stderr.txt
[2026-01-26 13:26:52] HITS file was successfully produced:
[2026-01-26 13:26:52] -rw------- 1 boinc boinc 183637305 Jan 26 13:25 shared/HITS.pool.root.1
[2026-01-26 13:26:52]  *** Contents of shared directory: ***
[2026-01-26 13:26:52] total 670532
[2026-01-26 13:26:52] -rw-r--r-- 2 boinc boinc 501335290 Jan 26 12:02 ATLAS.root_0
[2026-01-26 13:26:52] -rw-r--r-- 2 boinc boinc    597750 Jan 26 12:02 input.tar.gz
[2026-01-26 13:26:52] -rw-r--r-- 2 boinc boinc     15845 Jan 26 12:02 start_atlas.sh
[2026-01-26 13:26:52] -rw------- 1 boinc boinc 183637305 Jan 26 13:25 HITS.pool.root.1
[2026-01-26 13:26:52] -rw------- 1 boinc boinc   1024000 Jan 26 13:26 result.tar.gz
13:26:53 (178486): run_atlas exited; CPU time 14342.533382
13:26:53 (178486): called boinc_finish(0)

</stderr_txt>
]]>

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