Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:36:58 (1540161): wrapper (7.7.26015): starting
13:36:58 (1540161): wrapper: running run_atlas (--nthreads 4)
[2026-01-26 13:36:58] Arguments: --nthreads 4
[2026-01-26 13:36:58] Threads: 4
[2026-01-26 13:36:58] Checking for CVMFS
[2026-01-26 13:36:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 13:36:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 13:36:59] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 13:36:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 13:36:59] 2.9.2.0 41542 8461 111208 155545 2 188 22610272 36864001 0 130560 0 4237817 99.988 264217 6158 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 13:36:59] CVMFS is ok
[2026-01-26 13:36:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 13:36:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 13:36:59] Further information can be found at the LHC@home message board.
[2026-01-26 13:36:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 13:36:59] Checking for apptainer binary...
[2026-01-26 13:36:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 13:36:59] Running /usr/bin/apptainer --version
[2026-01-26 13:36:59] apptainer version 1.4.1-1.1
[2026-01-26 13:36:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 13:36:59] thA332a
[2026-01-26 13:36:59] apptainer works
[2026-01-26 13:36:59] Set ATHENA_PROC_NUMBER=4
[2026-01-26 13:36:59] Set ATHENA_CORE_NUMBER=4
[2026-01-26 13:36:59] Starting ATLAS job with PandaID=6982915373
[2026-01-26 13:36:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 15:02:37]  *** The last 200 lines of the pilot log: ***
[2026-01-26 15:02:37] 2026-01-26 14:02:05,714 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 15:02:37] 2026-01-26 14:02:05,714 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 15:02:37] 2026-01-26 14:02:05,714 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 15:02:37] 2026-01-26 14:02:05,714 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 15:02:37] 2026-01-26 14:02:05,714 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 15:02:37] 2026-01-26 14:02:05,714 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 15:02:37] 2026-01-26 14:02:05,714 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 15:02:37] 2026-01-26 14:02:05,714 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 15:02:37] 2026-01-26 14:02:05,714 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 15:02:37] 2026-01-26 14:02:05,715 | INFO     | job 6982915373 has completed (purged errors)
[2026-01-26 15:02:37] 2026-01-26 14:02:05,715 | INFO     | overall cleanup function is called
[2026-01-26 15:02:37] 2026-01-26 14:02:06,721 | INFO     | --- collectZombieJob: --- 10, [1548777]
[2026-01-26 15:02:37] 2026-01-26 14:02:06,722 | INFO     | zombie collector waiting for pid 1548777
[2026-01-26 15:02:37] 2026-01-26 14:02:06,722 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 15:02:37] 2026-01-26 14:02:06,722 | INFO     | collected zombie processes
[2026-01-26 15:02:37] 2026-01-26 14:02:06,722 | INFO     | will attempt to kill all subprocesses of pid=1548777
[2026-01-26 15:02:37] 2026-01-26 14:02:06,765 | INFO     | process IDs to be killed: [1548777] (in reverse order)
[2026-01-26 15:02:37] 2026-01-26 14:02:06,799 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 15:02:37] 2026-01-26 14:02:06,800 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 15:02:37] 2026-01-26 14:02:06,801 | INFO     | did not find any defunct processes belonging to 1548777
[2026-01-26 15:02:37] 2026-01-26 14:02:06,803 | INFO     | did not find any defunct processes belonging to 1548777
[2026-01-26 15:02:37] 2026-01-26 14:02:06,803 | INFO     | ready for new job
[2026-01-26 15:02:37] 2026-01-26 14:02:06,803 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 15:02:37] 2026-01-26 14:02:06,804 | INFO     | **************************************
[2026-01-26 15:02:37] 2026-01-26 14:02:06,804 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 15:02:37] 2026-01-26 14:02:06,804 | INFO     | **************************************
[2026-01-26 15:02:37] 2026-01-26 14:02:06,804 | INFO     | 
[2026-01-26 15:02:37] 2026-01-26 14:02:06,804 | INFO     | architecture information:
[2026-01-26 15:02:37] 2026-01-26 14:02:06,804 | INFO     | executing command: cat /etc/os-release
[2026-01-26 15:02:37] 2026-01-26 14:02:06,819 | INFO     | cat /etc/os-release:
[2026-01-26 15:02:37] NAME="CentOS Linux"
[2026-01-26 15:02:37] VERSION="7 (Core)"
[2026-01-26 15:02:37] ID="centos"
[2026-01-26 15:02:37] ID_LIKE="rhel fedora"
[2026-01-26 15:02:37] VERSION_ID="7"
[2026-01-26 15:02:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 15:02:37] ANSI_COLOR="0;31"
[2026-01-26 15:02:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 15:02:37] HOME_URL="https://www.centos.org/"
[2026-01-26 15:02:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 15:02:37] 
[2026-01-26 15:02:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 15:02:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 15:02:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 15:02:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 15:02:37] 
[2026-01-26 15:02:37] 2026-01-26 14:02:06,819 | INFO     | **************************************
[2026-01-26 15:02:37] 2026-01-26 14:02:07,322 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 15:02:37] 2026-01-26 14:02:07,339 | INFO     | sufficient remaining disk space (335837921280 B)
[2026-01-26 15:02:37] 2026-01-26 14:02:07,340 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 15:02:37] 2026-01-26 14:02:07,340 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 15:02:37] 2026-01-26 14:02:07,340 | INFO     | update_server=False
[2026-01-26 15:02:37] 2026-01-26 14:02:07,340 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 15:02:37] 2026-01-26 14:02:07,340 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 15:02:37] 2026-01-26 14:02:07,340 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 15:02:37] 2026-01-26 14:02:07,340 | INFO     | aborting loop
[2026-01-26 15:02:37] 2026-01-26 14:02:07,527 | INFO     | all payload control threads have been joined
[2026-01-26 15:02:37] 2026-01-26 14:02:07,621 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 15:02:37] 2026-01-26 14:02:08,143 | INFO     | all data control threads have been joined
[2026-01-26 15:02:37] 2026-01-26 14:02:08,341 | INFO     | [job] job monitor thread has finished
[2026-01-26 15:02:37] 2026-01-26 14:02:08,342 | INFO     | [job] queue monitor thread has finished
[2026-01-26 15:02:37] 2026-01-26 14:02:08,345 | INFO     | [job] retrieve thread has finished
[2026-01-26 15:02:37] 2026-01-26 14:02:08,501 | INFO     | all job control threads have been joined
[2026-01-26 15:02:37] 2026-01-26 14:02:08,533 | INFO     | [payload] control thread has finished
[2026-01-26 15:02:37] 2026-01-26 14:02:08,877 | INFO     | [payload] validate_post thread has finished
[2026-01-26 15:02:37] 2026-01-26 14:02:08,981 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 15:02:37] 2026-01-26 14:02:09,149 | INFO     | [data] control thread has finished
[2026-01-26 15:02:37] 2026-01-26 14:02:09,204 | INFO     | [job] validate thread has finished
[2026-01-26 15:02:37] 2026-01-26 14:02:09,313 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 15:02:37] 2026-01-26 14:02:09,335 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 15:02:37] 2026-01-26 14:02:09,507 | INFO     | [job] control thread has finished
[2026-01-26 15:02:37] 2026-01-26 14:02:09,546 | INFO     | [data] copytool_in thread has finished
[2026-01-26 15:02:37] 2026-01-26 14:02:09,627 | INFO     | [data] copytool_out thread has finished
[2026-01-26 15:02:37] 2026-01-26 14:02:09,648 | INFO     | [payload] failed_post thread has finished
[2026-01-26 15:02:37] 2026-01-26 14:02:09,738 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 15:02:37] 2026-01-26 14:02:12,988 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 15:02:37] 2026-01-26 14:02:18,138 | INFO     | job.realtimelogging is not enabled
[2026-01-26 15:02:37] 2026-01-26 14:02:18,314 | INFO     | [monitor] cgroup control has ended
[2026-01-26 15:02:37] 2026-01-26 14:02:19,144 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 15:02:37] 2026-01-26 14:02:21,160 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140037100296000)>', '<ExcThread(monitor, started 140036284585728)>']
[2026-01-26 15:02:37] 2026-01-26 14:02:26,173 | INFO     | all workflow threads have been joined
[2026-01-26 15:02:37] 2026-01-26 14:02:26,173 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 15:02:37] 2026-01-26 14:02:26,174 | INFO     | traces error code: 0
[2026-01-26 15:02:37] 2026-01-26 14:02:26,174 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 15:02:37] 2026-01-26 14:02:37,399 | INFO     | PID=1544267 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 15:02:37] 2026-01-26 14:02:37,400 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 15:02:37] 2026-01-26 14:02:37,400 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 15:02:37] 2026-01-26 14:02:37,400 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 15:02:37] 2026-01-26 14:02:37,400 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 15:02:37] 2026-01-26 14:02:37,400 | INFO     | [monitor] control thread has ended
[2026-01-26 15:02:37] 2026-01-26 14:02:37,477 [wrapper] ==== pilot stdout END ====
[2026-01-26 15:02:37] 2026-01-26 14:02:37,481 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 15:02:37] 2026-01-26 14:02:37,485 [wrapper] pilotpid: 1544267
[2026-01-26 15:02:37] 2026-01-26 14:02:37,489 [wrapper] Pilot exit status: 0
[2026-01-26 15:02:37] 2026-01-26 14:02:37,501 [wrapper] pandaids: 6982915373
[2026-01-26 15:02:37] 2026-01-26 14:02:37,522 [wrapper] cleanup supervisor_pilot 1554026 1544268
[2026-01-26 15:02:37] 2026-01-26 14:02:37,526 [wrapper] Test setup, not cleaning
[2026-01-26 15:02:37] 2026-01-26 14:02:37,530 [wrapper] apfmon messages muted
[2026-01-26 15:02:37] 2026-01-26 14:02:37,533 [wrapper] ==== wrapper stdout END ====
[2026-01-26 15:02:37] 2026-01-26 14:02:37,537 [wrapper] ==== wrapper stderr END ====
[2026-01-26 15:02:37]  *** Error codes and diagnostics ***
[2026-01-26 15:02:37]     "exeErrorCode": 0,
[2026-01-26 15:02:37]     "exeErrorDiag": "",
[2026-01-26 15:02:37]     "pilotErrorCode": 0,
[2026-01-26 15:02:37]     "pilotErrorDiag": "",
[2026-01-26 15:02:37]  *** Listing of results directory ***
[2026-01-26 15:02:37] total 408852
[2026-01-26 15:02:37] -rw-r--r-- 1 boinc boinc    584422 Jan 25 10:42 pilot3.tar.gz
[2026-01-26 15:02:37] -rwx------ 1 boinc boinc     36322 Jan 25 10:42 runpilot2-wrapper.sh
[2026-01-26 15:02:37] -rw-r--r-- 1 boinc boinc      5111 Jan 25 10:43 queuedata.json
[2026-01-26 15:02:37] -rw-r--r-- 1 boinc boinc       100 Jan 26 13:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 15:02:37] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 13:36 run_atlas
[2026-01-26 15:02:37] -rw-r--r-- 1 boinc boinc       105 Jan 26 13:36 job.xml
[2026-01-26 15:02:37] -rw-r--r-- 2 boinc boinc 250360135 Jan 26 13:36 EVNT.48318735._000008.pool.root.1
[2026-01-26 15:02:37] -rw-r--r-- 2 boinc boinc    597768 Jan 26 13:36 input.tar.gz
[2026-01-26 15:02:37] -rw-r--r-- 2 boinc boinc     15845 Jan 26 13:36 start_atlas.sh
[2026-01-26 15:02:37] drwxrwx--x 2 boinc boinc      4096 Jan 26 13:36 shared
[2026-01-26 15:02:37] -rw-r--r-- 1 boinc boinc         0 Jan 26 13:36 boinc_setup_complete
[2026-01-26 15:02:37] -rw-r--r-- 1 boinc boinc      6370 Jan 26 13:36 init_data.xml
[2026-01-26 15:02:37] -rw-r--r-- 1 boinc boinc         0 Jan 26 13:36 boinc_lockfile
[2026-01-26 15:02:37] -rw-r--r-- 1 boinc boinc      2599 Jan 26 13:36 pandaJob.out
[2026-01-26 15:02:37] -rw------- 1 boinc boinc   1002189 Jan 26 13:37 agis_schedconf.cvmfs.json
[2026-01-26 15:02:37] -rw------- 1 boinc boinc   1516246 Jan 26 13:37 agis_ddmendpoints.agis.ALL.json
[2026-01-26 15:02:37] -rw------- 1 boinc boinc       428 Jan 26 13:37 workernode_map.json
[2026-01-26 15:02:37] drwx------ 5 boinc boinc      4096 Jan 26 13:37 pilot3
[2026-01-26 15:02:37] -rw------- 1 boinc boinc 162382569 Jan 26 15:01 HITS.48318737._000176.pool.root.1
[2026-01-26 15:02:37] -rw-r--r-- 1 boinc boinc       529 Jan 26 15:01 boinc_task_state.xml
[2026-01-26 15:02:37] -rw------- 1 boinc boinc      1020 Jan 26 15:01 memory_monitor_summary.json
[2026-01-26 15:02:37] -rw------- 1 boinc boinc    254789 Jan 26 15:01 log.48318737._000176.job.log.tgz.1
[2026-01-26 15:02:37] -rw------- 1 boinc boinc      6309 Jan 26 15:02 heartbeat.json
[2026-01-26 15:02:37] -rw-r--r-- 1 boinc boinc        27 Jan 26 15:02 wrapper_checkpoint.txt
[2026-01-26 15:02:37] -rw------- 1 boinc boinc       747 Jan 26 15:02 pilotlog.txt
[2026-01-26 15:02:37] -rw------- 1 boinc boinc        95 Jan 26 15:02 pilot_heartbeat.json
[2026-01-26 15:02:37] -rw-r--r-- 1 boinc boinc      8192 Jan 26 15:02 boinc_mmap_file
[2026-01-26 15:02:37] -rw------- 1 boinc boinc    744596 Jan 26 15:02 log.48318737._000176.job.log.1
[2026-01-26 15:02:37] -rw------- 1 boinc boinc       357 Jan 26 15:02 output.list
[2026-01-26 15:02:37] -rw-r--r-- 1 boinc boinc       620 Jan 26 15:02 runtime_log
[2026-01-26 15:02:37] -rw------- 1 boinc boinc   1013760 Jan 26 15:02 result.tar.gz
[2026-01-26 15:02:37] -rw-r--r-- 1 boinc boinc      8901 Jan 26 15:02 runtime_log.err
[2026-01-26 15:02:37] -rw------- 1 boinc boinc       658 Jan 26 15:02 o3tNDm3oB48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSZ0KDm62QmDo.diag
[2026-01-26 15:02:37] -rw-r--r-- 1 boinc boinc     11816 Jan 26 15:02 stderr.txt
[2026-01-26 15:02:37] HITS file was successfully produced:
[2026-01-26 15:02:37] -rw------- 1 boinc boinc 162382569 Jan 26 15:01 shared/HITS.pool.root.1
[2026-01-26 15:02:37]  *** Contents of shared directory: ***
[2026-01-26 15:02:37] total 404676
[2026-01-26 15:02:37] -rw-r--r-- 2 boinc boinc 250360135 Jan 26 13:36 ATLAS.root_0
[2026-01-26 15:02:37] -rw-r--r-- 2 boinc boinc    597768 Jan 26 13:36 input.tar.gz
[2026-01-26 15:02:37] -rw-r--r-- 2 boinc boinc     15845 Jan 26 13:36 start_atlas.sh
[2026-01-26 15:02:37] -rw------- 1 boinc boinc 162382569 Jan 26 15:01 HITS.pool.root.1
[2026-01-26 15:02:37] -rw------- 1 boinc boinc   1013760 Jan 26 15:02 result.tar.gz
15:02:59 (1540161): run_atlas exited; CPU time 19319.517531
15:02:59 (1540161): called boinc_finish(0)

</stderr_txt>
]]>

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