Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:08:38 (1092866): wrapper (7.7.26015): starting
18:08:38 (1092866): wrapper: running run_atlas (--nthreads 3)
[2026-01-26 18:08:38] Arguments: --nthreads 3
[2026-01-26 18:08:38] Threads: 3
[2026-01-26 18:08:38] Checking for CVMFS
[2026-01-26 18:08:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 18:08:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 18:08:39] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 18:08:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 18:08:39] 2.9.2.0 3955128 8638 86556 155554 2 50 16294583 36864000 0 130560 0 3805136 99.987 272288 5452 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 18:08:39] CVMFS is ok
[2026-01-26 18:08:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 18:08:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 18:08:39] Further information can be found at the LHC@home message board.
[2026-01-26 18:08:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 18:08:39] Checking for apptainer binary...
[2026-01-26 18:08:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 18:08:39] Running /usr/bin/apptainer --version
[2026-01-26 18:08:39] apptainer version 1.4.1-1.1
[2026-01-26 18:08:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 18:08:39] thA332
[2026-01-26 18:08:39] apptainer works
[2026-01-26 18:08:39] Set ATHENA_PROC_NUMBER=3
[2026-01-26 18:08:39] Set ATHENA_CORE_NUMBER=3
[2026-01-26 18:08:39] Starting ATLAS job with PandaID=6983191340
[2026-01-26 18:08:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 19:36:10]  *** The last 200 lines of the pilot log: ***
[2026-01-26 19:36:10] 2026-01-26 18:35:38,687 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 19:36:10] 2026-01-26 18:35:38,687 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 19:36:10] 2026-01-26 18:35:38,687 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 19:36:10] 2026-01-26 18:35:38,687 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 19:36:10] 2026-01-26 18:35:38,687 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 19:36:10] 2026-01-26 18:35:38,687 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 19:36:10] 2026-01-26 18:35:38,687 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 19:36:10] 2026-01-26 18:35:38,687 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 19:36:10] 2026-01-26 18:35:38,687 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 19:36:10] 2026-01-26 18:35:38,687 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 19:36:10] 2026-01-26 18:35:38,687 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 19:36:10] 2026-01-26 18:35:38,687 | INFO     | job 6983191340 has completed (purged errors)
[2026-01-26 19:36:10] 2026-01-26 18:35:38,687 | INFO     | overall cleanup function is called
[2026-01-26 19:36:10] 2026-01-26 18:35:39,694 | INFO     | --- collectZombieJob: --- 10, [1101334]
[2026-01-26 19:36:10] 2026-01-26 18:35:39,694 | INFO     | zombie collector waiting for pid 1101334
[2026-01-26 19:36:10] 2026-01-26 18:35:39,694 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 19:36:10] 2026-01-26 18:35:39,694 | INFO     | collected zombie processes
[2026-01-26 19:36:10] 2026-01-26 18:35:39,694 | INFO     | will attempt to kill all subprocesses of pid=1101334
[2026-01-26 19:36:10] 2026-01-26 18:35:39,736 | INFO     | process IDs to be killed: [1101334] (in reverse order)
[2026-01-26 19:36:10] 2026-01-26 18:35:39,760 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 19:36:10] 2026-01-26 18:35:39,760 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 19:36:10] 2026-01-26 18:35:39,761 | INFO     | did not find any defunct processes belonging to 1101334
[2026-01-26 19:36:10] 2026-01-26 18:35:39,762 | INFO     | did not find any defunct processes belonging to 1101334
[2026-01-26 19:36:10] 2026-01-26 18:35:39,762 | INFO     | ready for new job
[2026-01-26 19:36:10] 2026-01-26 18:35:39,762 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 19:36:10] 2026-01-26 18:35:39,763 | INFO     | **************************************
[2026-01-26 19:36:10] 2026-01-26 18:35:39,763 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 19:36:10] 2026-01-26 18:35:39,763 | INFO     | **************************************
[2026-01-26 19:36:10] 2026-01-26 18:35:39,763 | INFO     | 
[2026-01-26 19:36:10] 2026-01-26 18:35:39,763 | INFO     | architecture information:
[2026-01-26 19:36:10] 2026-01-26 18:35:39,764 | INFO     | executing command: cat /etc/os-release
[2026-01-26 19:36:10] 2026-01-26 18:35:39,772 | INFO     | cat /etc/os-release:
[2026-01-26 19:36:10] NAME="CentOS Linux"
[2026-01-26 19:36:10] VERSION="7 (Core)"
[2026-01-26 19:36:10] ID="centos"
[2026-01-26 19:36:10] ID_LIKE="rhel fedora"
[2026-01-26 19:36:10] VERSION_ID="7"
[2026-01-26 19:36:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 19:36:10] ANSI_COLOR="0;31"
[2026-01-26 19:36:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 19:36:10] HOME_URL="https://www.centos.org/"
[2026-01-26 19:36:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 19:36:10] 
[2026-01-26 19:36:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 19:36:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 19:36:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 19:36:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 19:36:10] 
[2026-01-26 19:36:10] 2026-01-26 18:35:39,772 | INFO     | **************************************
[2026-01-26 19:36:10] 2026-01-26 18:35:40,275 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 19:36:10] 2026-01-26 18:35:40,287 | INFO     | sufficient remaining disk space (240702717952 B)
[2026-01-26 19:36:10] 2026-01-26 18:35:40,288 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 19:36:10] 2026-01-26 18:35:40,288 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 19:36:10] 2026-01-26 18:35:40,288 | INFO     | update_server=False
[2026-01-26 19:36:10] 2026-01-26 18:35:40,288 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 19:36:10] 2026-01-26 18:35:40,288 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 19:36:10] 2026-01-26 18:35:40,288 | INFO     | aborting loop
[2026-01-26 19:36:10] 2026-01-26 18:35:41,152 | INFO     | all job control threads have been joined
[2026-01-26 19:36:10] 2026-01-26 18:35:41,290 | INFO     | [job] job monitor thread has finished
[2026-01-26 19:36:10] 2026-01-26 18:35:41,293 | INFO     | [job] retrieve thread has finished
[2026-01-26 19:36:10] 2026-01-26 18:35:41,306 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 19:36:10] 2026-01-26 18:35:41,306 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 19:36:10] 2026-01-26 18:35:41,356 | INFO     | all data control threads have been joined
[2026-01-26 19:36:10] 2026-01-26 18:35:41,386 | INFO     | all payload control threads have been joined
[2026-01-26 19:36:10] 2026-01-26 18:35:41,442 | INFO     | [data] copytool_in thread has finished
[2026-01-26 19:36:10] 2026-01-26 18:35:41,553 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 19:36:10] 2026-01-26 18:35:41,764 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 19:36:10] 2026-01-26 18:35:41,809 | INFO     | [payload] validate_post thread has finished
[2026-01-26 19:36:10] 2026-01-26 18:35:42,158 | INFO     | [job] control thread has finished
[2026-01-26 19:36:10] 2026-01-26 18:35:42,362 | INFO     | [data] control thread has finished
[2026-01-26 19:36:10] 2026-01-26 18:35:42,392 | INFO     | [payload] control thread has finished
[2026-01-26 19:36:10] 2026-01-26 18:35:42,512 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 19:36:10] 2026-01-26 18:35:42,530 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 19:36:10] 2026-01-26 18:35:42,731 | INFO     | [job] validate thread has finished
[2026-01-26 19:36:10] 2026-01-26 18:35:42,889 | INFO     | [payload] failed_post thread has finished
[2026-01-26 19:36:10] 2026-01-26 18:35:43,201 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 19:36:10] 2026-01-26 18:35:43,559 | INFO     | [data] copytool_out thread has finished
[2026-01-26 19:36:10] 2026-01-26 18:35:44,207 | INFO     | [job] queue monitor thread has finished
[2026-01-26 19:36:10] 2026-01-26 18:35:46,513 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 19:36:10] 2026-01-26 18:35:54,764 | INFO     | [monitor] cgroup control has ended
[2026-01-26 19:36:10] 2026-01-26 18:35:56,826 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140033627625280)>', '<ExcThread(monitor, started 140033273079552)>']
[2026-01-26 19:36:10] 2026-01-26 18:36:01,851 | INFO     | all workflow threads have been joined
[2026-01-26 19:36:10] 2026-01-26 18:36:01,852 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 19:36:10] 2026-01-26 18:36:01,852 | INFO     | traces error code: 0
[2026-01-26 19:36:10] 2026-01-26 18:36:01,852 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 19:36:10] 2026-01-26 18:36:10,501 | INFO     | PID=1096904 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 19:36:10] 2026-01-26 18:36:10,501 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 19:36:10] 2026-01-26 18:36:10,501 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 19:36:10] 2026-01-26 18:36:10,501 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 19:36:10] 2026-01-26 18:36:10,501 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 19:36:10] 2026-01-26 18:36:10,501 | INFO     | [monitor] control thread has ended
[2026-01-26 19:36:10] 2026-01-26 18:36:10,547 [wrapper] ==== pilot stdout END ====
[2026-01-26 19:36:10] 2026-01-26 18:36:10,550 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 19:36:10] 2026-01-26 18:36:10,552 [wrapper] pilotpid: 1096904
[2026-01-26 19:36:10] 2026-01-26 18:36:10,554 [wrapper] Pilot exit status: 0
[2026-01-26 19:36:10] 2026-01-26 18:36:10,561 [wrapper] pandaids: 6983191340
[2026-01-26 19:36:10] 2026-01-26 18:36:10,577 [wrapper] cleanup supervisor_pilot 1106515 1096905
[2026-01-26 19:36:10] 2026-01-26 18:36:10,579 [wrapper] Test setup, not cleaning
[2026-01-26 19:36:10] 2026-01-26 18:36:10,581 [wrapper] apfmon messages muted
[2026-01-26 19:36:10] 2026-01-26 18:36:10,583 [wrapper] ==== wrapper stdout END ====
[2026-01-26 19:36:10] 2026-01-26 18:36:10,586 [wrapper] ==== wrapper stderr END ====
[2026-01-26 19:36:10]  *** Error codes and diagnostics ***
[2026-01-26 19:36:10]     "exeErrorCode": 0,
[2026-01-26 19:36:10]     "exeErrorDiag": "",
[2026-01-26 19:36:10]     "pilotErrorCode": 0,
[2026-01-26 19:36:10]     "pilotErrorDiag": "",
[2026-01-26 19:36:10]  *** Listing of results directory ***
[2026-01-26 19:36:10] total 439248
[2026-01-26 19:36:10] -rw-r--r-- 1 boinc boinc    584422 Jan 25 17:28 pilot3.tar.gz
[2026-01-26 19:36:10] -rwx------ 1 boinc boinc     36322 Jan 25 17:31 runpilot2-wrapper.sh
[2026-01-26 19:36:10] -rw-r--r-- 1 boinc boinc      5111 Jan 25 17:34 queuedata.json
[2026-01-26 19:36:10] -rw-r--r-- 1 boinc boinc       100 Jan 26 18:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 19:36:10] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 18:08 run_atlas
[2026-01-26 19:36:10] -rw-r--r-- 1 boinc boinc       105 Jan 26 18:08 job.xml
[2026-01-26 19:36:10] -rw-r--r-- 2 boinc boinc 252976415 Jan 26 18:08 EVNT.47929406._000096.pool.root.1
[2026-01-26 19:36:10] -rw-r--r-- 2 boinc boinc    597788 Jan 26 18:08 input.tar.gz
[2026-01-26 19:36:10] -rw-r--r-- 2 boinc boinc     15845 Jan 26 18:08 start_atlas.sh
[2026-01-26 19:36:10] drwxrwx--x 2 boinc boinc      4096 Jan 26 18:08 shared
[2026-01-26 19:36:10] -rw-r--r-- 1 boinc boinc         0 Jan 26 18:08 boinc_setup_complete
[2026-01-26 19:36:10] -rw-r--r-- 1 boinc boinc      6439 Jan 26 18:08 init_data.xml
[2026-01-26 19:36:10] -rw-r--r-- 1 boinc boinc         0 Jan 26 18:08 boinc_lockfile
[2026-01-26 19:36:10] -rw-r--r-- 1 boinc boinc      2575 Jan 26 18:08 pandaJob.out
[2026-01-26 19:36:10] -rw------- 1 boinc boinc   1006276 Jan 26 18:08 agis_schedconf.cvmfs.json
[2026-01-26 19:36:10] -rw------- 1 boinc boinc   1516246 Jan 26 18:08 agis_ddmendpoints.agis.ALL.json
[2026-01-26 19:36:10] -rw------- 1 boinc boinc       427 Jan 26 18:08 workernode_map.json
[2026-01-26 19:36:10] drwx------ 5 boinc boinc      4096 Jan 26 18:08 pilot3
[2026-01-26 19:36:10] -rw------- 1 boinc boinc        95 Jan 26 19:35 pilot_heartbeat.json
[2026-01-26 19:36:10] -rw------- 1 boinc boinc 190874563 Jan 26 19:35 HITS.47929408._002527.pool.root.1
[2026-01-26 19:36:10] -rw-r--r-- 1 boinc boinc       529 Jan 26 19:35 boinc_task_state.xml
[2026-01-26 19:36:10] -rw------- 1 boinc boinc      1018 Jan 26 19:35 memory_monitor_summary.json
[2026-01-26 19:36:10] -rw------- 1 boinc boinc    248822 Jan 26 19:35 log.47929408._002527.job.log.tgz.1
[2026-01-26 19:36:10] -rw------- 1 boinc boinc      6305 Jan 26 19:35 heartbeat.json
[2026-01-26 19:36:10] -rw-r--r-- 1 boinc boinc        27 Jan 26 19:36 wrapper_checkpoint.txt
[2026-01-26 19:36:10] -rw-r--r-- 1 boinc boinc      8192 Jan 26 19:36 boinc_mmap_file
[2026-01-26 19:36:10] -rw------- 1 boinc boinc       747 Jan 26 19:36 pilotlog.txt
[2026-01-26 19:36:10] -rw------- 1 boinc boinc    760839 Jan 26 19:36 log.47929408._002527.job.log.1
[2026-01-26 19:36:10] -rw------- 1 boinc boinc       357 Jan 26 19:36 output.list
[2026-01-26 19:36:10] -rw-r--r-- 1 boinc boinc       620 Jan 26 19:36 runtime_log
[2026-01-26 19:36:10] -rw------- 1 boinc boinc   1024000 Jan 26 19:36 result.tar.gz
[2026-01-26 19:36:10] -rw------- 1 boinc boinc       657 Jan 26 19:36 uQ2MDmZCI48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQM1KDmbp8Pgn.diag
[2026-01-26 19:36:10] -rw-r--r-- 1 boinc boinc      8896 Jan 26 19:36 runtime_log.err
[2026-01-26 19:36:10] -rw-r--r-- 1 boinc boinc     11930 Jan 26 19:36 stderr.txt
[2026-01-26 19:36:10] HITS file was successfully produced:
[2026-01-26 19:36:10] -rw------- 1 boinc boinc 190874563 Jan 26 19:35 shared/HITS.pool.root.1
[2026-01-26 19:36:10]  *** Contents of shared directory: ***
[2026-01-26 19:36:10] total 435060
[2026-01-26 19:36:10] -rw-r--r-- 2 boinc boinc 252976415 Jan 26 18:08 ATLAS.root_0
[2026-01-26 19:36:10] -rw-r--r-- 2 boinc boinc    597788 Jan 26 18:08 input.tar.gz
[2026-01-26 19:36:10] -rw-r--r-- 2 boinc boinc     15845 Jan 26 18:08 start_atlas.sh
[2026-01-26 19:36:10] -rw------- 1 boinc boinc 190874563 Jan 26 19:35 HITS.pool.root.1
[2026-01-26 19:36:10] -rw------- 1 boinc boinc   1024000 Jan 26 19:36 result.tar.gz
19:36:12 (1092866): run_atlas exited; CPU time 14985.447758
19:36:12 (1092866): called boinc_finish(0)

</stderr_txt>
]]>

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