Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:31:46 (3653511): wrapper (7.7.26015): starting
11:31:46 (3653511): wrapper: running run_atlas (--nthreads 3)
[2026-01-26 11:31:46] Arguments: --nthreads 3
[2026-01-26 11:31:46] Threads: 3
[2026-01-26 11:31:46] Checking for CVMFS
[2026-01-26 11:31:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 11:31:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 11:31:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 11:31:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 11:31:47] 2.9.2.0 3392929 855 59956 155543 2 49 17582085 36864001 0 130560 0 355888 99.985 33694 16428 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 11:31:47] CVMFS is ok
[2026-01-26 11:31:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 11:31:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 11:31:47] Further information can be found at the LHC@home message board.
[2026-01-26 11:31:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 11:31:47] Checking for apptainer binary...
[2026-01-26 11:31:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 11:31:47] Running /usr/bin/apptainer --version
[2026-01-26 11:31:47] apptainer version 1.4.1-1.1
[2026-01-26 11:31:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 11:31:47] atlasA221b
[2026-01-26 11:31:47] apptainer works
[2026-01-26 11:31:47] Set ATHENA_PROC_NUMBER=3
[2026-01-26 11:31:47] Set ATHENA_CORE_NUMBER=3
[2026-01-26 11:31:47] Starting ATLAS job with PandaID=6983304614
[2026-01-26 11:31:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 13:12:14]  *** The last 200 lines of the pilot log: ***
[2026-01-26 13:12:14] 2026-01-26 12:11:36,996 | WARNING  | process 3662052 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 13:12:14] 2026-01-26 12:11:37,041 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 13:12:14] 2026-01-26 12:11:37,054 | INFO     | [data] copytool_in thread has finished
[2026-01-26 13:12:14] 2026-01-26 12:11:37,095 | INFO     | number of running child processes to parent process 3662052: 1
[2026-01-26 13:12:14] 2026-01-26 12:11:37,095 | INFO     | maximum number of monitored processes: 6
[2026-01-26 13:12:14] 2026-01-26 12:11:37,096 | INFO     | aborting job monitoring since job object (job id=6983304614) has expired
[2026-01-26 13:12:14] 2026-01-26 12:11:37,096 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 13:12:14] 2026-01-26 12:11:37,096 | INFO     | will abort loop
[2026-01-26 13:12:14] 2026-01-26 12:11:37,100 | INFO     | [payload] control thread has finished
[2026-01-26 13:12:14] 2026-01-26 12:11:37,338 | INFO     | [data] control thread has finished
[2026-01-26 13:12:14] 2026-01-26 12:11:37,399 | INFO     | [payload] failed_post thread has finished
[2026-01-26 13:12:14] 2026-01-26 12:11:37,405 | INFO     | [data] copytool_out thread has finished
[2026-01-26 13:12:14] 2026-01-26 12:11:37,787 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 13:12:14] 2026-01-26 12:11:38,012 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 13:12:14] 2026-01-26 12:11:38,101 | INFO     | [job] job monitor thread has finished
[2026-01-26 13:12:14] 2026-01-26 12:11:42,019 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 13:12:14] 2026-01-26 12:11:46,402 | INFO     | job.realtimelogging is not enabled
[2026-01-26 13:12:14] 2026-01-26 12:11:47,407 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 13:12:14] 2026-01-26 12:12:05,658 | INFO     | PID=3657577 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 13:12:14] 2026-01-26 12:12:05,658 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 13:12:14] 2026-01-26 12:12:05,658 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 13:12:14] 2026-01-26 12:12:05,658 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 13:12:14] 2026-01-26 12:12:08,275 | INFO     | [monitor] cgroup control has ended
[2026-01-26 13:12:14] 2026-01-26 12:12:09,381 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140603183957824)>', '<ExcThread(monitor, started 140602331100928)>']
[2026-01-26 13:12:14] 2026-01-26 12:12:09,679 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 13:12:14] 2026-01-26 12:12:09,680 | INFO     | [monitor] control thread has ended
[2026-01-26 13:12:14] 2026-01-26 12:12:14,406 | INFO     | all workflow threads have been joined
[2026-01-26 13:12:14] 2026-01-26 12:12:14,406 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 13:12:14] 2026-01-26 12:12:14,406 | INFO     | traces error code: 0
[2026-01-26 13:12:14] 2026-01-26 12:12:14,406 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 13:12:14] 2026-01-26 12:12:14,459 [wrapper] ==== pilot stdout END ====
[2026-01-26 13:12:14] 2026-01-26 12:12:14,462 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 13:12:14] 2026-01-26 12:12:14,465 [wrapper] pilotpid: 3657577
[2026-01-26 13:12:14] 2026-01-26 12:12:14,468 [wrapper] Pilot exit status: 0
[2026-01-26 13:12:14] 2026-01-26 12:12:14,476 [wrapper] pandaids: 6983304614
[2026-01-26 13:12:14] 2026-01-26 12:12:14,497 [wrapper] cleanup supervisor_pilot 3682809 3657578
[2026-01-26 13:12:14] 2026-01-26 12:12:14,500 [wrapper] Test setup, not cleaning
[2026-01-26 13:12:14] 2026-01-26 12:12:14,503 [wrapper] apfmon messages muted
[2026-01-26 13:12:14] 2026-01-26 12:12:14,506 [wrapper] ==== wrapper stdout END ====
[2026-01-26 13:12:14] 2026-01-26 12:12:14,508 [wrapper] ==== wrapper stderr END ====
[2026-01-26 13:12:14]  *** Error codes and diagnostics ***
[2026-01-26 13:12:14]     "exeErrorCode": 0,
[2026-01-26 13:12:14]     "exeErrorDiag": "",
[2026-01-26 13:12:14]     "pilotErrorCode": 0,
[2026-01-26 13:12:14]     "pilotErrorDiag": "",
[2026-01-26 13:12:14]  *** Listing of results directory ***
[2026-01-26 13:12:14] total 664852
[2026-01-26 13:12:14] -rw-r--r-- 1 boinc boinc    584422 Jan 25 17:28 pilot3.tar.gz
[2026-01-26 13:12:14] -rwx------ 1 boinc boinc     36322 Jan 25 17:29 runpilot2-wrapper.sh
[2026-01-26 13:12:14] -rw-r--r-- 1 boinc boinc      5111 Jan 25 17:30 queuedata.json
[2026-01-26 13:12:14] -rw-r--r-- 1 boinc boinc       100 Jan 26 11:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 13:12:14] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 11:31 run_atlas
[2026-01-26 13:12:14] -rw-r--r-- 1 boinc boinc       105 Jan 26 11:31 job.xml
[2026-01-26 13:12:14] -rw-r--r-- 2 boinc boinc 493166729 Jan 26 11:31 EVNT.48318040._000015.pool.root.1
[2026-01-26 13:12:14] -rw-r--r-- 2 boinc boinc    597765 Jan 26 11:31 input.tar.gz
[2026-01-26 13:12:14] -rw-r--r-- 2 boinc boinc     15845 Jan 26 11:31 start_atlas.sh
[2026-01-26 13:12:14] drwxrwx--x 2 boinc boinc      4096 Jan 26 11:31 shared
[2026-01-26 13:12:14] -rw-r--r-- 1 boinc boinc         0 Jan 26 11:31 boinc_setup_complete
[2026-01-26 13:12:14] -rw-r--r-- 1 boinc boinc      6199 Jan 26 11:31 init_data.xml
[2026-01-26 13:12:14] -rw-r--r-- 1 boinc boinc         0 Jan 26 11:31 boinc_lockfile
[2026-01-26 13:12:14] -rw-r--r-- 1 boinc boinc      2531 Jan 26 11:31 pandaJob.out
[2026-01-26 13:12:14] -rw------- 1 boinc boinc   1004246 Jan 26 11:31 agis_schedconf.cvmfs.json
[2026-01-26 13:12:14] -rw------- 1 boinc boinc   1516246 Jan 26 11:31 agis_ddmendpoints.agis.ALL.json
[2026-01-26 13:12:14] -rw------- 1 boinc boinc       430 Jan 26 11:31 workernode_map.json
[2026-01-26 13:12:14] drwx------ 5 boinc boinc      4096 Jan 26 11:31 pilot3
[2026-01-26 13:12:14] -rw------- 1 boinc boinc 181374541 Jan 26 13:11 HITS.48318042._000752.pool.root.1
[2026-01-26 13:12:14] -rw-r--r-- 1 boinc boinc       530 Jan 26 13:11 boinc_task_state.xml
[2026-01-26 13:12:14] -rw------- 1 boinc boinc      1024 Jan 26 13:11 memory_monitor_summary.json
[2026-01-26 13:12:14] -rw------- 1 boinc boinc    304573 Jan 26 13:11 log.48318042._000752.job.log.tgz.1
[2026-01-26 13:12:14] -rw------- 1 boinc boinc        95 Jan 26 13:11 pilot_heartbeat.json
[2026-01-26 13:12:14] -rw------- 1 boinc boinc      6322 Jan 26 13:11 heartbeat.json
[2026-01-26 13:12:14] -rw-r--r-- 1 boinc boinc      8192 Jan 26 13:12 boinc_mmap_file
[2026-01-26 13:12:14] -rw-r--r-- 1 boinc boinc        27 Jan 26 13:12 wrapper_checkpoint.txt
[2026-01-26 13:12:14] -rw------- 1 boinc boinc      5344 Jan 26 13:12 pilotlog.txt
[2026-01-26 13:12:14] -rw------- 1 boinc boinc    864392 Jan 26 13:12 log.48318042._000752.job.log.1
[2026-01-26 13:12:14] -rw------- 1 boinc boinc       357 Jan 26 13:12 output.list
[2026-01-26 13:12:14] -rw-r--r-- 1 boinc boinc       620 Jan 26 13:12 runtime_log
[2026-01-26 13:12:14] -rw------- 1 boinc boinc   1187840 Jan 26 13:12 result.tar.gz
[2026-01-26 13:12:14] -rw-r--r-- 1 boinc boinc      8916 Jan 26 13:12 runtime_log.err
[2026-01-26 13:12:14] -rw------- 1 boinc boinc       661 Jan 26 13:12 AbtNDmfAI48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHK1KDmMa802m.diag
[2026-01-26 13:12:14] -rw-r--r-- 1 boinc boinc      6672 Jan 26 13:12 stderr.txt
[2026-01-26 13:12:14] HITS file was successfully produced:
[2026-01-26 13:12:14] -rw------- 1 boinc boinc 181374541 Jan 26 13:11 shared/HITS.pool.root.1
[2026-01-26 13:12:14]  *** Contents of shared directory: ***
[2026-01-26 13:12:14] total 660504
[2026-01-26 13:12:14] -rw-r--r-- 2 boinc boinc 493166729 Jan 26 11:31 ATLAS.root_0
[2026-01-26 13:12:14] -rw-r--r-- 2 boinc boinc    597765 Jan 26 11:31 input.tar.gz
[2026-01-26 13:12:14] -rw-r--r-- 2 boinc boinc     15845 Jan 26 11:31 start_atlas.sh
[2026-01-26 13:12:14] -rw------- 1 boinc boinc 181374541 Jan 26 13:11 HITS.pool.root.1
[2026-01-26 13:12:14] -rw------- 1 boinc boinc   1187840 Jan 26 13:12 result.tar.gz
13:12:15 (3653511): run_atlas exited; CPU time 17211.911714
13:12:15 (3653511): called boinc_finish(0)

</stderr_txt>
]]>

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