Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:11:36 (3426013): wrapper (7.7.26015): starting
21:11:36 (3426013): wrapper: running run_atlas (--nthreads 8)
[2026-01-25 21:11:37] Arguments: --nthreads 8
[2026-01-25 21:11:37] Threads: 8
[2026-01-25 21:11:37] Checking for CVMFS
[2026-01-25 21:11:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-25 21:11:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-25 21:11:37] Running cvmfs_config stat atlas.cern.ch
[2026-01-25 21:11:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-25 21:11:37] 2.13.3.0 245921 3264 150244 155527 1 513 29886847 40960001 21306 16776704 0 6954232 99.420 10996475 45381 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-25 21:11:37] CVMFS is ok
[2026-01-25 21:11:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-25 21:11:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-25 21:11:37] Further information can be found at the LHC@home message board.
[2026-01-25 21:11:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-25 21:11:37] Checking for apptainer binary...
[2026-01-25 21:11:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-25 21:11:37] Running /usr/bin/apptainer --version
[2026-01-25 21:11:38] apptainer version 1.4.5-2.el9
[2026-01-25 21:11:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-25 21:11:38] c-212-12.aglt2.org
[2026-01-25 21:11:38] apptainer works
[2026-01-25 21:11:38] Set ATHENA_PROC_NUMBER=8
[2026-01-25 21:11:38] Set ATHENA_CORE_NUMBER=8
[2026-01-25 21:11:38] Starting ATLAS job with PandaID=6978423635
[2026-01-25 21:11:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-25 22:47:34]  *** The last 200 lines of the pilot log: ***
[2026-01-25 22:47:34]  filesize=383079
[2026-01-25 22:47:34]  filetype=log
[2026-01-25 22:47:34]  guid=45e88215-a5a9-4c3b-a0b8-af26bb24def4
[2026-01-25 22:47:34]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-25 22:47:34]  is_altstaged=None
[2026-01-25 22:47:34]  is_tar=False
[2026-01-25 22:47:34]  lfn=log.48310826._001999.job.log.tgz.1
[2026-01-25 22:47:34]  mtime=0
[2026-01-25 22:47:34]  protocol_id=None
[2026-01-25 22:47:34]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-25 22:47:34]  replicas=None
[2026-01-25 22:47:34]  scope=mc23_13p6TeV
[2026-01-25 22:47:34]  status=None
[2026-01-25 22:47:34]  status_code=0
[2026-01-25 22:47:34]  storage_token=
[2026-01-25 22:47:34]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6978423635/log.48310826._001999.job.log.tgz.1
[2026-01-25 22:47:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4f/a6/log.48310826._001999.job.log.tgz.1
[2026-01-25 22:47:34]  workdir=None
[2026-01-25 22:47:34] ]
[2026-01-25 22:47:34] 2026-01-26 03:46:36,878 | INFO     | transferring file log.48310826._001999.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6978423635/log.48310826._001999.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-25 22:47:34] 2026-01-26 03:46:36,878 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6978423635/log.48310826._001999.job.log.tgz.1 /tmp/boinchome/slots/5/log.48310826._001999.job
[2026-01-25 22:47:34] 2026-01-26 03:46:36,954 | INFO     | adding to output.list: log.48310826._001999.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4f/a6/log.48310826._001999.job.log.tg
[2026-01-25 22:47:34] 2026-01-26 03:46:36,955 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-25 22:47:34] 2026-01-26 03:46:36,955 | INFO     | summary of transferred files:
[2026-01-25 22:47:34] 2026-01-26 03:46:36,955 | INFO     |  -- lfn=log.48310826._001999.job.log.tgz.1, status_code=0, status=transferred
[2026-01-25 22:47:34] 2026-01-26 03:46:36,955 | INFO     | stage-out finished correctly
[2026-01-25 22:47:34] 2026-01-26 03:46:37,347 | INFO     | monitor loop #400: job 0:6978423635 is in state 'finished'
[2026-01-25 22:47:34] 2026-01-26 03:46:37,347 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-25 22:47:34] 2026-01-26 03:46:37,920 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-25 22:47:34] 2026-01-26 03:46:39,093 | INFO     | job 6978423635 has state=finished
[2026-01-25 22:47:34] 2026-01-26 03:46:39,093 | INFO     | preparing for final server update for job 6978423635 in state='finished'
[2026-01-25 22:47:34] 2026-01-26 03:46:39,093 | INFO     | reading metadata from: /tmp/boinchome/slots/5/PanDA_Pilot-6978423635/jobReport.json
[2026-01-25 22:47:34] 2026-01-26 03:46:39,095 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/5/workernode_map.json
[2026-01-25 22:47:34] 2026-01-26 03:46:39,095 | INFO     | this job has now completed (state=finished)
[2026-01-25 22:47:34] 2026-01-26 03:46:39,095 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-25 22:47:34] 2026-01-26 03:46:39,095 | INFO     | log transfer has been attempted: DONE
[2026-01-25 22:47:34] 2026-01-26 03:46:39,096 | INFO     | job 6978423635 has finished - writing final server update
[2026-01-25 22:47:34] 2026-01-26 03:46:39,096 | INFO     | total number of processed events: 400 (read)
[2026-01-25 22:47:34] 2026-01-26 03:46:39,145 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6978423635/memory_monitor_summary.json (trf name=prmon)
[2026-01-25 22:47:34] 2026-01-26 03:46:39,145 | INFO     | extracted standard info from prmon json
[2026-01-25 22:47:34] 2026-01-26 03:46:39,146 | INFO     | extracted standard memory fields from prmon json
[2026-01-25 22:47:34] 2026-01-26 03:46:39,146 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-25 22:47:34] 2026-01-26 03:46:39,146 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-25 22:47:34] 2026-01-26 03:46:39,146 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-25 22:47:34] 2026-01-26 03:46:39,147 | INFO     | fitting pss+swap vs Time
[2026-01-25 22:47:34] 2026-01-26 03:46:39,148 | INFO     | sum of square deviations: 190401255.8117648
[2026-01-25 22:47:34] 2026-01-26 03:46:39,148 | INFO     | sum of deviations: 11650534472.364698
[2026-01-25 22:47:34] 2026-01-26 03:46:39,148 | INFO     | mean x: 1769396490.0470588
[2026-01-25 22:47:34] 2026-01-26 03:46:39,148 | INFO     | mean y: 2482390.6588235293
[2026-01-25 22:47:34] 2026-01-26 03:46:39,148 | INFO     | intersect: -108265788817.3539
[2026-01-25 22:47:34] 2026-01-26 03:46:39,148 | INFO     | chi2: 0.5323792096547946
[2026-01-25 22:47:34] 2026-01-26 03:46:39,148 | INFO     | current memory leak: 61.19 B/s (using 85 data points, chi2=0.53)
[2026-01-25 22:47:34] 2026-01-26 03:46:39,149 | INFO     | could have reported an average CPU frequency of 3200 MHz (7 samples)
[2026-01-25 22:47:34] 2026-01-26 03:46:39,149 | INFO     | ..............................
[2026-01-25 22:47:34] 2026-01-26 03:46:39,149 | INFO     | . Timing measurements:
[2026-01-25 22:47:34] 2026-01-26 03:46:39,149 | INFO     | . get job = 0 s
[2026-01-25 22:47:34] 2026-01-26 03:46:39,149 | INFO     | . initial setup = 28 s
[2026-01-25 22:47:34] 2026-01-26 03:46:39,149 | INFO     | . payload setup = 33 s
[2026-01-25 22:47:34] 2026-01-26 03:46:39,149 | INFO     | . stage-in = 0 s
[2026-01-25 22:47:34] 2026-01-26 03:46:39,149 | INFO     | . payload execution = 5585 s
[2026-01-25 22:47:34] 2026-01-26 03:46:39,149 | INFO     | . stage-out = 2 s
[2026-01-25 22:47:34] 2026-01-26 03:46:39,149 | INFO     | . log creation = 0 s
[2026-01-25 22:47:34] 2026-01-26 03:46:39,149 | INFO     | ..............................
[2026-01-25 22:47:34] 2026-01-26 03:46:39,184 | INFO     | PID=3429885 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-25 22:47:34] 2026-01-26 03:46:39,184 | INFO     | .. there are 17 such processes running
[2026-01-25 22:47:34] 2026-01-26 03:46:39,299 | INFO     | 
[2026-01-25 22:47:34] 2026-01-26 03:46:39,299 | INFO     | job summary report
[2026-01-25 22:47:34] 2026-01-26 03:46:39,299 | INFO     | --------------------------------------------------
[2026-01-25 22:47:34] 2026-01-26 03:46:39,299 | INFO     | PanDA job id: 6978423635
[2026-01-25 22:47:34] 2026-01-26 03:46:39,299 | INFO     | task id: 48310826
[2026-01-25 22:47:34] 2026-01-26 03:46:39,299 | INFO     | errors: (none)
[2026-01-25 22:47:34] 2026-01-26 03:46:39,299 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-25 22:47:34] 2026-01-26 03:46:39,299 | INFO     | pilot state: finished 
[2026-01-25 22:47:34] 2026-01-26 03:46:39,299 | INFO     | transexitcode: 0
[2026-01-25 22:47:34] 2026-01-26 03:46:39,299 | INFO     | exeerrorcode: 0
[2026-01-25 22:47:34] 2026-01-26 03:46:39,300 | INFO     | exeerrordiag: 
[2026-01-25 22:47:34] 2026-01-26 03:46:39,300 | INFO     | exitcode: 0
[2026-01-25 22:47:34] 2026-01-26 03:46:39,300 | INFO     | exitmsg: OK
[2026-01-25 22:47:34] 2026-01-26 03:46:39,300 | INFO     | cpuconsumptiontime: 28813 s
[2026-01-25 22:47:34] 2026-01-26 03:46:39,300 | INFO     | nevents: 400
[2026-01-25 22:47:34] 2026-01-26 03:46:39,300 | INFO     | neventsw: 0
[2026-01-25 22:47:34] 2026-01-26 03:46:39,300 | INFO     | pid: 3436161
[2026-01-25 22:47:34] 2026-01-26 03:46:39,300 | INFO     | pgrp: 3436161
[2026-01-25 22:47:34] 2026-01-26 03:46:39,300 | INFO     | corecount: 8
[2026-01-25 22:47:34] 2026-01-26 03:46:39,300 | INFO     | event service: False
[2026-01-25 22:47:34] 2026-01-26 03:46:39,300 | INFO     | sizes: {0: 2283809, 1: 2284270, 5623: 2310802, 5626: 2319800, 5628: 2320050}
[2026-01-25 22:47:34] 2026-01-26 03:46:39,300 | INFO     | --------------------------------------------------
[2026-01-25 22:47:34] 2026-01-26 03:46:39,300 | INFO     | 
[2026-01-25 22:47:34] 2026-01-26 03:46:39,300 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-01-25 22:47:34] 2026-01-26 03:46:39,597 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-25 22:47:34] 2026-01-26 03:46:39,597 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-25 22:47:34] 2026-01-26 03:46:39,597 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-25 22:47:34] 2026-01-26 03:46:39,597 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-25 22:47:34] 2026-01-26 03:46:39,597 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-25 22:47:34] 2026-01-26 03:46:39,598 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-25 22:47:34] 2026-01-26 03:46:39,598 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-25 22:47:34] 2026-01-26 03:46:39,598 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-25 22:47:34] 2026-01-26 03:46:39,598 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-25 22:47:34] 2026-01-26 03:46:39,598 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-25 22:47:34] 2026-01-26 03:46:39,598 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-25 22:47:34] 2026-01-26 03:46:39,598 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-25 22:47:34] 2026-01-26 03:46:39,598 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-25 22:47:34] 2026-01-26 03:46:39,598 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-25 22:47:34] 2026-01-26 03:46:39,598 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-25 22:47:34] 2026-01-26 03:46:39,598 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-25 22:47:34] 2026-01-26 03:46:39,598 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-25 22:47:34] 2026-01-26 03:46:39,598 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-25 22:47:34] 2026-01-26 03:46:39,598 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-25 22:47:34] 2026-01-26 03:46:39,598 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-25 22:47:34] 2026-01-26 03:46:39,599 | INFO     | job 6978423635 has completed (purged errors)
[2026-01-25 22:47:34] 2026-01-26 03:46:39,599 | INFO     | overall cleanup function is called
[2026-01-25 22:47:34] 2026-01-26 03:46:40,619 | INFO     | --- collectZombieJob: --- 10, [3436161]
[2026-01-25 22:47:34] 2026-01-26 03:46:40,619 | INFO     | zombie collector waiting for pid 3436161
[2026-01-25 22:47:34] 2026-01-26 03:46:40,619 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-25 22:47:34] 2026-01-26 03:46:40,619 | INFO     | collected zombie processes
[2026-01-25 22:47:34] 2026-01-26 03:46:40,619 | INFO     | will attempt to kill all subprocesses of pid=3436161
[2026-01-25 22:47:34] 2026-01-26 03:46:41,240 | INFO     | process IDs to be killed: [3436161] (in reverse order)
[2026-01-25 22:47:34] 2026-01-26 03:46:41,580 | WARNING  | found no corresponding commands to process id(s)
[2026-01-25 22:47:34] 2026-01-26 03:46:41,620 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-25 22:47:34] 2026-01-26 03:46:41,635 | INFO     | did not find any defunct processes belonging to 3436161
[2026-01-25 22:47:34] 2026-01-26 03:46:41,649 | INFO     | did not find any defunct processes belonging to 3436161
[2026-01-25 22:47:34] 2026-01-26 03:46:41,649 | INFO     | ready for new job
[2026-01-25 22:47:34] 2026-01-26 03:46:41,649 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-25 22:47:34] 2026-01-26 03:46:41,651 | INFO     | **************************************
[2026-01-25 22:47:34] 2026-01-26 03:46:41,651 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-25 22:47:34] 2026-01-26 03:46:41,652 | INFO     | **************************************
[2026-01-25 22:47:34] 2026-01-26 03:46:41,652 | INFO     | 
[2026-01-25 22:47:34] 2026-01-26 03:46:41,676 | INFO     | architecture information:
[2026-01-25 22:47:34] 2026-01-26 03:46:41,692 | INFO     | executing command: cat /etc/os-release
[2026-01-25 22:47:34] 2026-01-26 03:46:41,751 | INFO     | cat /etc/os-release:
[2026-01-25 22:47:34] NAME="CentOS Linux"
[2026-01-25 22:47:34] VERSION="7 (Core)"
[2026-01-25 22:47:34] ID="centos"
[2026-01-25 22:47:34] ID_LIKE="rhel fedora"
[2026-01-25 22:47:34] VERSION_ID="7"
[2026-01-25 22:47:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-25 22:47:34] ANSI_COLOR="0;31"
[2026-01-25 22:47:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-25 22:47:34] HOME_URL="https://www.centos.org/"
[2026-01-25 22:47:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-25 22:47:34] 
[2026-01-25 22:47:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-25 22:47:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-25 22:47:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-25 22:47:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-25 22:47:34] 
[2026-01-25 22:47:34] 2026-01-26 03:46:41,752 | INFO     | **************************************
[2026-01-25 22:47:34] 2026-01-26 03:46:42,273 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-01-25 22:47:34] 2026-01-26 03:46:42,425 | INFO     | sufficient remaining disk space (126069243904 B)
[2026-01-25 22:47:34] 2026-01-26 03:46:42,425 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-25 22:47:34] 2026-01-26 03:46:42,426 | INFO     | current server update state: UPDATING_FINAL
[2026-01-25 22:47:34] 2026-01-26 03:46:42,426 | INFO     | update_server=False
[2026-01-25 22:47:34] 2026-01-26 03:46:42,426 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-25 22:47:34] 2026-01-26 03:46:42,427 | INFO     | all payload control threads have been joined
[2026-01-25 22:47:34] 2026-01-26 03:46:42,555 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-25 22:47:34] 2026-01-26 03:46:42,626 | INFO     | all data control threads have been joined
[2026-01-25 22:47:34] 2026-01-26 03:46:43,388 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-25 22:47:34] 2026-01-26 03:46:43,388 | INFO     | aborting loop
[2026-01-25 22:47:34] 2026-01-26 03:46:43,433 | INFO     | [job] retrieve thread has finished
[2026-01-25 22:47:34] 2026-01-26 03:46:43,437 | INFO     | [payload] control thread has finished
[2026-01-25 22:47:34] 2026-01-26 03:46:43,537 | INFO     | [payload] execute_payloads thread has finished
[2026-01-25 22:47:34] 2026-01-26 03:46:43,556 | INFO     | [data] copytool_in thread has finished
[2026-01-25 22:47:34] 2026-01-26 03:46:43,632 | INFO     | [data] control thread has finished
[2026-01-25 22:47:34] 2026-01-26 03:46:43,785 | INFO     | [job] create_data_payload thread has finished
[2026-01-25 22:47:34] 2026-01-26 03:46:43,873 | INFO     | all job control threads have been joined
[2026-01-25 22:47:34] 2026-01-26 03:46:44,268 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-25 22:47:34] 2026-01-26 03:46:44,302 | INFO     | [payload] validate_pre thread has finished
[2026-01-25 22:47:34] 2026-01-26 03:46:44,394 | INFO     | [job] job monitor thread has finished
[2026-01-25 22:47:34] 2026-01-26 03:46:44,562 | INFO     | [data] copytool_out thread has finished
[2026-01-25 22:47:34] 2026-01-26 03:46:44,570 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-25 22:47:34] 2026-01-26 03:46:44,586 | INFO     | [payload] failed_post thread has finished
[2026-01-25 22:47:34] 2026-01-26 03:46:44,805 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-25 22:47:34] 2026-01-26 03:46:44,825 | INFO     | [job] validate thread has finished
[2026-01-25 22:47:34] 2026-01-26 03:46:44,879 | INFO     | [job] control thread has finished
[2026-01-25 22:47:34] 2026-01-26 03:46:44,990 | INFO     | [payload] validate_post thread has finished
[2026-01-25 22:47:34] 2026-01-26 03:46:45,274 | INFO     | [job] queue monitor thread has finished
[2026-01-25 22:47:34] 2026-01-26 03:46:48,582 | INFO     | [data] queue_monitor thread has finished
[2026-01-25 22:47:34] 2026-01-26 03:46:58,330 | INFO     | [monitor] cgroup control has ended
[2026-01-25 22:47:34] 2026-01-26 03:46:59,849 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140141110417216)>', '<ExcThread(monitor, started 140140756334336)>']
[2026-01-25 22:47:34] 2026-01-26 03:47:04,875 | INFO     | all workflow threads have been joined
[2026-01-25 22:47:34] 2026-01-26 03:47:04,877 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-25 22:47:34] 2026-01-26 03:47:04,877 | INFO     | traces error code: 0
[2026-01-25 22:47:34] 2026-01-26 03:47:04,878 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-25 22:47:34] 2026-01-26 03:47:12,073 | INFO     | PID=3429885 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-25 22:47:34] 2026-01-26 03:47:12,073 | INFO     | .. there are 17 such processes running
[2026-01-25 22:47:34] 2026-01-26 03:47:12,074 | INFO     | found 0 job(s) in 20 queues
[2026-01-25 22:47:34] 2026-01-26 03:47:12,074 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-25 22:47:34] 2026-01-26 03:47:12,074 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-25 22:47:34] 2026-01-26 03:47:12,074 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-25 22:47:34] 2026-01-26 03:47:12,074 | INFO     | [monitor] control thread has ended
[2026-01-25 22:47:34] 2026-01-26 03:47:12,184 [wrapper] ==== pilot stdout END ====
[2026-01-25 22:47:34] 2026-01-26 03:47:12,186 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-25 22:47:34] 2026-01-26 03:47:12,188 [wrapper] pilotpid: 3429885
[2026-01-25 22:47:34] 2026-01-26 03:47:12,190 [wrapper] Pilot exit status: 0
[2026-01-25 22:47:34] 2026-01-26 03:47:12,219 [wrapper] pandaids: 6978423635
[2026-01-25 22:47:34] 2026-01-26 03:47:12,306 [wrapper] cleanup supervisor_pilot 3641919 3429886
[2026-01-25 22:47:34] 2026-01-26 03:47:12,322 [wrapper] Test setup, not cleaning
[2026-01-25 22:47:34] 2026-01-26 03:47:12,365 [wrapper] apfmon messages muted
[2026-01-25 22:47:34] 2026-01-26 03:47:12,393 [wrapper] ==== wrapper stdout END ====
[2026-01-25 22:47:34] 2026-01-26 03:47:12,396 [wrapper] ==== wrapper stderr END ====
[2026-01-25 22:47:34]  *** Error codes and diagnostics ***
[2026-01-25 22:47:34]     "exeErrorCode": 0,
[2026-01-25 22:47:34]     "exeErrorDiag": "",
[2026-01-25 22:47:34]     "pilotErrorCode": 0,
[2026-01-25 22:47:34]     "pilotErrorDiag": "",
[2026-01-25 22:47:34]  *** Listing of results directory ***
[2026-01-25 22:47:34] total 666940
[2026-01-25 22:47:34] -rw-r--r--. 1 boincer umatlas    621528 Jan 14 06:27 pilot3.tar.gz
[2026-01-25 22:47:34] -rwx------. 1 boincer umatlas     36322 Jan 23 06:35 runpilot2-wrapper.sh
[2026-01-25 22:47:34] -rw-r--r--. 1 boincer umatlas      5111 Jan 23 06:36 queuedata.json
[2026-01-25 22:47:34] -rw-r--r--. 1 boincer umatlas       100 Jan 25 21:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-25 22:47:34] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 25 21:11 run_atlas
[2026-01-25 22:47:34] -rw-r--r--. 1 boincer umatlas       105 Jan 25 21:11 job.xml
[2026-01-25 22:47:34] -rw-r--r--. 2 boincer umatlas 492930259 Jan 25 21:11 EVNT.48310824._000137.pool.root.1
[2026-01-25 22:47:34] -rw-r--r--. 2 boincer umatlas     15845 Jan 25 21:11 start_atlas.sh
[2026-01-25 22:47:34] drwxrwx--x. 2 boincer umatlas      4096 Jan 25 21:11 shared
[2026-01-25 22:47:34] -rw-r--r--. 2 boincer umatlas    634113 Jan 25 21:11 input.tar.gz
[2026-01-25 22:47:34] -rw-r--r--. 1 boincer umatlas         0 Jan 25 21:11 boinc_lockfile
[2026-01-25 22:47:34] -rw-r--r--. 1 boincer umatlas      2524 Jan 25 21:11 pandaJob.out
[2026-01-25 22:47:34] -rw-------. 1 boincer umatlas        57 Jan 25 21:11 setup.sh.local
[2026-01-25 22:47:34] -rw-------. 1 boincer umatlas   1004246 Jan 25 21:12 agis_schedconf.cvmfs.json
[2026-01-25 22:47:34] -rw-------. 1 boincer umatlas   1516246 Jan 25 21:12 agis_ddmendpoints.agis.ALL.json
[2026-01-25 22:47:34] -rw-------. 1 boincer umatlas       429 Jan 25 21:12 workernode_map.json
[2026-01-25 22:47:34] drwx------. 5 boincer umatlas      4096 Jan 25 21:12 pilot3
[2026-01-25 22:47:34] -rw-------. 1 boincer umatlas 183579379 Jan 25 22:45 HITS.48310826._001999.pool.root.1
[2026-01-25 22:47:34] -rw-r--r--. 1 boincer umatlas       530 Jan 25 22:45 boinc_task_state.xml
[2026-01-25 22:47:34] -rw-------. 1 boincer umatlas      1041 Jan 25 22:46 memory_monitor_summary.json
[2026-01-25 22:47:34] -rw-------. 1 boincer umatlas    383079 Jan 25 22:46 log.48310826._001999.job.log.tgz.1
[2026-01-25 22:47:34] -rw-------. 1 boincer umatlas      6328 Jan 25 22:46 heartbeat.json
[2026-01-25 22:47:34] -rw-------. 1 boincer umatlas       823 Jan 25 22:47 pilotlog.txt
[2026-01-25 22:47:34] -rw-------. 1 boincer umatlas        95 Jan 25 22:47 pilot_heartbeat.json
[2026-01-25 22:47:34] -rw-------. 1 boincer umatlas    825971 Jan 25 22:47 log.48310826._001999.job.log.1
[2026-01-25 22:47:34] -rw-------. 1 boincer umatlas       357 Jan 25 22:47 output.list
[2026-01-25 22:47:34] -rw-r--r--. 1 boincer umatlas       620 Jan 25 22:47 runtime_log
[2026-01-25 22:47:34] -rw-------. 1 boincer umatlas   1228800 Jan 25 22:47 result.tar.gz
[2026-01-25 22:47:34] -rw-r--r--. 1 boincer umatlas      9341 Jan 25 22:47 runtime_log.err
[2026-01-25 22:47:34] -rw-------. 1 boincer umatlas       652 Jan 25 22:47 fphNDm4cU38nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJd2KDm7JsZfm.diag
[2026-01-25 22:47:34] -rw-r--r--. 1 boincer umatlas      6957 Jan 25 22:47 init_data.xml
[2026-01-25 22:47:34] -rw-r--r--. 1 boincer umatlas        27 Jan 25 22:47 wrapper_checkpoint.txt
[2026-01-25 22:47:34] -rw-r--r--. 1 boincer umatlas      8192 Jan 25 22:47 boinc_mmap_file
[2026-01-25 22:47:34] -rw-r--r--. 1 boincer umatlas     21296 Jan 25 22:47 stderr.txt
[2026-01-25 22:47:34] HITS file was successfully produced:
[2026-01-25 22:47:34] -rw-------. 1 boincer umatlas 183579379 Jan 25 22:45 shared/HITS.pool.root.1
[2026-01-25 22:47:34]  *** Contents of shared directory: ***
[2026-01-25 22:47:34] total 662504
[2026-01-25 22:47:34] -rw-r--r--. 2 boincer umatlas 492930259 Jan 25 21:11 ATLAS.root_0
[2026-01-25 22:47:34] -rw-r--r--. 2 boincer umatlas     15845 Jan 25 21:11 start_atlas.sh
[2026-01-25 22:47:34] -rw-r--r--. 2 boincer umatlas    634113 Jan 25 21:11 input.tar.gz
[2026-01-25 22:47:34] -rw-------. 1 boincer umatlas 183579379 Jan 25 22:45 HITS.pool.root.1
[2026-01-25 22:47:34] -rw-------. 1 boincer umatlas   1228800 Jan 25 22:47 result.tar.gz
22:47:36 (3426013): run_atlas exited; CPU time 28999.665792
22:47:36 (3426013): called boinc_finish(0)

</stderr_txt>
]]>

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