Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
17:12:46 (760565): wrapper (7.7.26015): starting
17:12:46 (760565): wrapper: running run_atlas (--nthreads 12)
[2026-01-26 17:12:46] Arguments: --nthreads 12
[2026-01-26 17:12:46] Threads: 12
[2026-01-26 17:12:46] Checking for CVMFS
[2026-01-26 17:12:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 17:12:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 17:12:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 17:12:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 17:12:48] 2.13.3.0 1914 1579 50912 155554 3 50 3913016 4096001 2736 130560 0 2248166 99.992 64558 622 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-26 17:12:48] CVMFS is ok
[2026-01-26 17:12:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 17:12:49] Checking for apptainer binary...
[2026-01-26 17:12:49] apptainer is not installed, using version from CVMFS
[2026-01-26 17:12:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 17:12:49] dualxeon2
[2026-01-26 17:12:49] apptainer works
[2026-01-26 17:12:49] Set ATHENA_PROC_NUMBER=12
[2026-01-26 17:12:49] Set ATHENA_CORE_NUMBER=12
[2026-01-26 17:12:49] Starting ATLAS job with PandaID=6983345428
[2026-01-26 17:12:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 19:11:37]  *** The last 200 lines of the pilot log: ***
[2026-01-26 19:11:37] 2026-01-26 19:10:33,913 | INFO     | chi2: 1.7657785540855389
[2026-01-26 19:11:37] 2026-01-26 19:10:33,913 | INFO     | sum of square deviations: 412686807.5
[2026-01-26 19:11:37] 2026-01-26 19:10:33,914 | INFO     | sum of deviations: 25741046875.0
[2026-01-26 19:11:37] 2026-01-26 19:10:33,914 | INFO     | mean x: 1769450948.5
[2026-01-26 19:11:37] 2026-01-26 19:10:33,914 | INFO     | mean y: 2615248.309090909
[2026-01-26 19:11:37] 2026-01-26 19:10:33,914 | INFO     | intersect: -110365632489.66035
[2026-01-26 19:11:37] 2026-01-26 19:10:33,914 | INFO     | chi2: 1.7645893946203721
[2026-01-26 19:11:37] 2026-01-26 19:10:33,915 | INFO     | current chi2=1.7645893946203721 (change=0.06734476768988598 %)
[2026-01-26 19:11:37] 2026-01-26 19:10:33,915 | INFO     | right removable region: 109
[2026-01-26 19:11:37] 2026-01-26 19:10:33,915 | INFO     | sum of square deviations: 412686807.5
[2026-01-26 19:11:37] 2026-01-26 19:10:33,920 | INFO     | sum of deviations: 4308763243.000001
[2026-01-26 19:11:37] 2026-01-26 19:10:33,920 | INFO     | mean x: 1769451253.5
[2026-01-26 19:11:37] 2026-01-26 19:10:33,920 | INFO     | mean y: 2675986.1272727274
[2026-01-26 19:11:37] 2026-01-26 19:10:33,920 | INFO     | intersect: -18471737013.762665
[2026-01-26 19:11:37] 2026-01-26 19:10:33,920 | INFO     | chi2: 0.10399882808859162
[2026-01-26 19:11:37] 2026-01-26 19:10:33,921 | INFO     | current chi2=0.10399882808859162 (change=94.11031310534572 %)
[2026-01-26 19:11:37] 2026-01-26 19:10:33,921 | INFO     | sum of square deviations: 358927660.0
[2026-01-26 19:11:37] 2026-01-26 19:10:33,921 | INFO     | sum of deviations: -1754974452.9999998
[2026-01-26 19:11:37] 2026-01-26 19:10:33,922 | INFO     | mean x: 1769451406.0
[2026-01-26 19:11:37] 2026-01-26 19:10:33,922 | INFO     | mean y: 2693100.6666666665
[2026-01-26 19:11:37] 2026-01-26 19:10:33,922 | INFO     | intersect: 8654414211.697592
[2026-01-26 19:11:37] 2026-01-26 19:10:33,922 | INFO     | chi2: 0.0036757798934010356
[2026-01-26 19:11:37] 2026-01-26 19:10:33,922 | INFO     | current chi2=0.0036757798934010356 (change=96.46555642889571 %)
[2026-01-26 19:11:37] 2026-01-26 19:10:33,923 | INFO     | sum of square deviations: 310052325.0
[2026-01-26 19:11:37] 2026-01-26 19:10:33,923 | INFO     | sum of deviations: -962211712.5000001
[2026-01-26 19:11:37] 2026-01-26 19:10:33,923 | INFO     | mean x: 1769451558.5
[2026-01-26 19:11:37] 2026-01-26 19:10:33,926 | INFO     | mean y: 2690594.79
[2026-01-26 19:11:37] 2026-01-26 19:10:33,927 | INFO     | intersect: 5493979893.427187
[2026-01-26 19:11:37] 2026-01-26 19:10:33,927 | INFO     | chi2: 0.0022210626881674182
[2026-01-26 19:11:37] 2026-01-26 19:10:33,927 | INFO     | current chi2=0.0022210626881674182 (change=39.57574303742198 %)
[2026-01-26 19:11:37] 2026-01-26 19:10:33,927 | INFO     | sum of square deviations: 265828240.0
[2026-01-26 19:11:37] 2026-01-26 19:10:33,928 | INFO     | sum of deviations: -457932734.0
[2026-01-26 19:11:37] 2026-01-26 19:10:33,928 | INFO     | mean x: 1769451711.0
[2026-01-26 19:11:37] 2026-01-26 19:10:33,928 | INFO     | mean y: 2688887.515789474
[2026-01-26 19:11:37] 2026-01-26 19:10:33,928 | INFO     | intersect: 3050859614.972014
[2026-01-26 19:11:37] 2026-01-26 19:10:33,928 | INFO     | chi2: 0.0010748189910747034
[2026-01-26 19:11:37] 2026-01-26 19:10:33,929 | INFO     | current chi2=0.0010748189910747034 (change=51.60789486939118 %)
[2026-01-26 19:11:37] 2026-01-26 19:10:33,929 | INFO     | sum of square deviations: 226022842.5
[2026-01-26 19:11:37] 2026-01-26 19:10:33,929 | INFO     | sum of deviations: -529190524.49999994
[2026-01-26 19:11:37] 2026-01-26 19:10:33,929 | INFO     | mean x: 1769451863.5
[2026-01-26 19:11:37] 2026-01-26 19:10:33,930 | INFO     | mean y: 2689167.4555555554
[2026-01-26 19:11:37] 2026-01-26 19:10:33,930 | INFO     | intersect: 4145532206.5305433
[2026-01-26 19:11:37] 2026-01-26 19:10:33,930 | INFO     | chi2: 0.0009770153687943877
[2026-01-26 19:11:37] 2026-01-26 19:10:33,930 | INFO     | current chi2=0.0009770153687943877 (change=9.099543559657661 %)
[2026-01-26 19:11:37] 2026-01-26 19:10:33,930 | INFO     | left removable region: 50
[2026-01-26 19:11:37] 2026-01-26 19:10:33,934 | INFO     | sum of square deviations: 63666310.0
[2026-01-26 19:11:37] 2026-01-26 19:10:33,935 | INFO     | sum of deviations: -460836395.0
[2026-01-26 19:11:37] 2026-01-26 19:10:33,935 | INFO     | mean x: 1769452443.0
[2026-01-26 19:11:37] 2026-01-26 19:10:33,935 | INFO     | mean y: 2689247.406779661
[2026-01-26 19:11:37] 2026-01-26 19:10:33,935 | INFO     | intersect: 12810531966.04499
[2026-01-26 19:11:37] 2026-01-26 19:10:33,935 | INFO     | chi2: 0.0004156696463199912
[2026-01-26 19:11:37] 2026-01-26 19:10:33,936 | INFO     | current memory leak: -7.24 B/s (using 59 data points, chi2=0.00)
[2026-01-26 19:11:37] 2026-01-26 19:10:33,936 | INFO     | could have reported an average CPU frequency of 2594 MHz (7 samples)
[2026-01-26 19:11:37] 2026-01-26 19:10:33,936 | INFO     | ..............................
[2026-01-26 19:11:37] 2026-01-26 19:10:33,936 | INFO     | . Timing measurements:
[2026-01-26 19:11:37] 2026-01-26 19:10:33,936 | INFO     | . get job = 0 s
[2026-01-26 19:11:37] 2026-01-26 19:10:33,936 | INFO     | . initial setup = 11 s
[2026-01-26 19:11:37] 2026-01-26 19:10:33,937 | INFO     | . payload setup = 12 s
[2026-01-26 19:11:37] 2026-01-26 19:10:33,937 | INFO     | . stage-in = 0 s
[2026-01-26 19:11:37] 2026-01-26 19:10:33,937 | INFO     | . payload execution = 7009 s
[2026-01-26 19:11:37] 2026-01-26 19:10:33,937 | INFO     | . stage-out = 1 s
[2026-01-26 19:11:37] 2026-01-26 19:10:33,937 | INFO     | . log creation = 0 s
[2026-01-26 19:11:37] 2026-01-26 19:10:33,937 | INFO     | ..............................
[2026-01-26 19:11:37] 2026-01-26 19:10:34,079 | INFO     | 
[2026-01-26 19:11:37] 2026-01-26 19:10:34,079 | INFO     | job summary report
[2026-01-26 19:11:37] 2026-01-26 19:10:34,079 | INFO     | --------------------------------------------------
[2026-01-26 19:11:37] 2026-01-26 19:10:34,079 | INFO     | PanDA job id: 6983345428
[2026-01-26 19:11:37] 2026-01-26 19:10:34,079 | INFO     | task id: 48317872
[2026-01-26 19:11:37] 2026-01-26 19:10:34,080 | INFO     | errors: (none)
[2026-01-26 19:11:37] 2026-01-26 19:10:34,080 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 19:11:37] 2026-01-26 19:10:34,080 | INFO     | pilot state: finished 
[2026-01-26 19:11:37] 2026-01-26 19:10:34,080 | INFO     | transexitcode: 0
[2026-01-26 19:11:37] 2026-01-26 19:10:34,080 | INFO     | exeerrorcode: 0
[2026-01-26 19:11:37] 2026-01-26 19:10:34,080 | INFO     | exeerrordiag: 
[2026-01-26 19:11:37] 2026-01-26 19:10:34,080 | INFO     | exitcode: 0
[2026-01-26 19:11:37] 2026-01-26 19:10:34,080 | INFO     | exitmsg: OK
[2026-01-26 19:11:37] 2026-01-26 19:10:34,080 | INFO     | cpuconsumptiontime: 54276 s
[2026-01-26 19:11:37] 2026-01-26 19:10:34,081 | INFO     | nevents: 400
[2026-01-26 19:11:37] 2026-01-26 19:10:34,081 | INFO     | neventsw: 0
[2026-01-26 19:11:37] 2026-01-26 19:10:34,081 | INFO     | pid: 769298
[2026-01-26 19:11:37] 2026-01-26 19:10:34,081 | INFO     | pgrp: 769298
[2026-01-26 19:11:37] 2026-01-26 19:10:34,081 | INFO     | corecount: 12
[2026-01-26 19:11:37] 2026-01-26 19:10:34,081 | INFO     | event service: False
[2026-01-26 19:11:37] 2026-01-26 19:10:34,081 | INFO     | sizes: {0: 2283822, 1: 2284283, 2: 2284283, 7025: 2311410, 7028: 2320454, 7030: 2320510, 7031: 2320832}
[2026-01-26 19:11:37] 2026-01-26 19:10:34,081 | INFO     | --------------------------------------------------
[2026-01-26 19:11:37] 2026-01-26 19:10:34,082 | INFO     | 
[2026-01-26 19:11:37] 2026-01-26 19:10:34,082 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/3
[2026-01-26 19:11:37] 2026-01-26 19:10:34,115 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 19:11:37] 2026-01-26 19:10:34,115 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 19:11:37] 2026-01-26 19:10:34,115 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 19:11:37] 2026-01-26 19:10:34,115 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 19:11:37] 2026-01-26 19:10:34,115 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 19:11:37] 2026-01-26 19:10:34,115 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 19:11:37] 2026-01-26 19:10:34,116 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 19:11:37] 2026-01-26 19:10:34,116 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 19:11:37] 2026-01-26 19:10:34,116 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 19:11:37] 2026-01-26 19:10:34,116 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 19:11:37] 2026-01-26 19:10:34,116 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 19:11:37] 2026-01-26 19:10:34,116 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 19:11:37] 2026-01-26 19:10:34,116 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 19:11:37] 2026-01-26 19:10:34,116 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 19:11:37] 2026-01-26 19:10:34,117 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 19:11:37] 2026-01-26 19:10:34,117 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 19:11:37] 2026-01-26 19:10:34,117 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 19:11:37] 2026-01-26 19:10:34,117 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 19:11:37] 2026-01-26 19:10:34,117 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 19:11:37] 2026-01-26 19:10:34,117 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 19:11:37] 2026-01-26 19:10:34,122 | INFO     | job 6983345428 has completed (purged errors)
[2026-01-26 19:11:37] 2026-01-26 19:10:34,123 | INFO     | overall cleanup function is called
[2026-01-26 19:11:37] 2026-01-26 19:10:35,134 | INFO     | --- collectZombieJob: --- 10, [769298]
[2026-01-26 19:11:37] 2026-01-26 19:10:35,135 | INFO     | zombie collector waiting for pid 769298
[2026-01-26 19:11:37] 2026-01-26 19:10:35,135 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 19:11:37] 2026-01-26 19:10:35,135 | INFO     | collected zombie processes
[2026-01-26 19:11:37] 2026-01-26 19:10:35,135 | INFO     | will attempt to kill all subprocesses of pid=769298
[2026-01-26 19:11:37] 2026-01-26 19:10:35,465 | INFO     | process IDs to be killed: [769298] (in reverse order)
[2026-01-26 19:11:37] 2026-01-26 19:10:35,570 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 19:11:37] 2026-01-26 19:10:35,570 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 19:11:37] 2026-01-26 19:10:35,581 | INFO     | did not find any defunct processes belonging to 769298
[2026-01-26 19:11:37] 2026-01-26 19:10:35,588 | INFO     | did not find any defunct processes belonging to 769298
[2026-01-26 19:11:37] 2026-01-26 19:10:35,588 | INFO     | ready for new job
[2026-01-26 19:11:37] 2026-01-26 19:10:35,588 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 19:11:37] 2026-01-26 19:10:35,594 | INFO     | **************************************
[2026-01-26 19:11:37] 2026-01-26 19:10:35,594 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 19:11:37] 2026-01-26 19:10:35,594 | INFO     | **************************************
[2026-01-26 19:11:37] 2026-01-26 19:10:35,594 | INFO     | 
[2026-01-26 19:11:37] 2026-01-26 19:10:35,600 | INFO     | architecture information:
[2026-01-26 19:11:37] 2026-01-26 19:10:35,601 | INFO     | executing command: cat /etc/os-release
[2026-01-26 19:11:37] 2026-01-26 19:10:35,627 | INFO     | cat /etc/os-release:
[2026-01-26 19:11:37] NAME="CentOS Linux"
[2026-01-26 19:11:37] VERSION="7 (Core)"
[2026-01-26 19:11:37] ID="centos"
[2026-01-26 19:11:37] ID_LIKE="rhel fedora"
[2026-01-26 19:11:37] VERSION_ID="7"
[2026-01-26 19:11:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 19:11:37] ANSI_COLOR="0;31"
[2026-01-26 19:11:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 19:11:37] HOME_URL="https://www.centos.org/"
[2026-01-26 19:11:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 19:11:37] 
[2026-01-26 19:11:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 19:11:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 19:11:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 19:11:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 19:11:37] 
[2026-01-26 19:11:37] 2026-01-26 19:10:35,627 | INFO     | **************************************
[2026-01-26 19:11:37] 2026-01-26 19:10:36,134 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/3
[2026-01-26 19:11:37] 2026-01-26 19:10:36,158 | INFO     | sufficient remaining disk space (80070311936 B)
[2026-01-26 19:11:37] 2026-01-26 19:10:36,159 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 19:11:37] 2026-01-26 19:10:36,159 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 19:11:37] 2026-01-26 19:10:36,159 | INFO     | update_server=False
[2026-01-26 19:11:37] 2026-01-26 19:10:36,159 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 19:11:37] 2026-01-26 19:10:36,341 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 19:11:37] 2026-01-26 19:10:36,454 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-26 19:11:37] 2026-01-26 19:10:36,455 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-26 19:11:37] 2026-01-26 19:10:36,455 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 19:11:37] 2026-01-26 19:10:36,455 | INFO     | will abort loop
[2026-01-26 19:11:37] 2026-01-26 19:10:36,481 | INFO     | all data control threads have been joined
[2026-01-26 19:11:37] 2026-01-26 19:10:36,713 | INFO     | all job control threads have been joined
[2026-01-26 19:11:37] 2026-01-26 19:10:37,165 | INFO     | [job] retrieve thread has finished
[2026-01-26 19:11:37] 2026-01-26 19:10:37,167 | INFO     | [data] copytool_in thread has finished
[2026-01-26 19:11:37] 2026-01-26 19:10:37,412 | INFO     | all payload control threads have been joined
[2026-01-26 19:11:37] 2026-01-26 19:10:37,462 | INFO     | [job] job monitor thread has finished
[2026-01-26 19:11:37] 2026-01-26 19:10:37,486 | INFO     | [data] control thread has finished
[2026-01-26 19:11:37] 2026-01-26 19:10:37,636 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 19:11:37] 2026-01-26 19:10:37,718 | INFO     | [job] control thread has finished
[2026-01-26 19:11:37] 2026-01-26 19:10:37,929 | INFO     | [job] validate thread has finished
[2026-01-26 19:11:37] 2026-01-26 19:10:38,133 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 19:11:37] 2026-01-26 19:10:38,267 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 19:11:37] 2026-01-26 19:10:38,346 | INFO     | [data] copytool_out thread has finished
[2026-01-26 19:11:37] 2026-01-26 19:10:38,417 | INFO     | [payload] control thread has finished
[2026-01-26 19:11:37] 2026-01-26 19:10:38,443 | INFO     | [payload] validate_post thread has finished
[2026-01-26 19:11:37] 2026-01-26 19:10:38,587 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 19:11:37] 2026-01-26 19:10:38,632 | INFO     | [payload] failed_post thread has finished
[2026-01-26 19:11:37] 2026-01-26 19:10:39,092 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 19:11:37] 2026-01-26 19:10:39,094 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 19:11:37] 2026-01-26 19:10:40,097 | INFO     | [job] queue monitor thread has finished
[2026-01-26 19:11:37] 2026-01-26 19:10:43,099 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 19:11:37] 2026-01-26 19:11:06,188 | INFO     | PID=764736 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-26 19:11:37] 2026-01-26 19:11:06,188 | INFO     | .. there are 4 such processes running
[2026-01-26 19:11:37] 2026-01-26 19:11:06,189 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 19:11:37] 2026-01-26 19:11:06,189 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 19:11:37] 2026-01-26 19:11:06,189 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 19:11:37] 2026-01-26 19:11:32,038 | INFO     | [monitor] cgroup control has ended
[2026-01-26 19:11:37] 2026-01-26 19:11:32,078 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139642140931904)>', '<ExcThread(monitor, started 139641634141952)>']
[2026-01-26 19:11:37] 2026-01-26 19:11:32,323 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 19:11:37] 2026-01-26 19:11:32,324 | INFO     | [monitor] control thread has ended
[2026-01-26 19:11:37] 2026-01-26 19:11:37,103 | INFO     | all workflow threads have been joined
[2026-01-26 19:11:37] 2026-01-26 19:11:37,104 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 19:11:37] 2026-01-26 19:11:37,104 | INFO     | traces error code: 0
[2026-01-26 19:11:37] 2026-01-26 19:11:37,104 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 19:11:37] 2026-01-26 19:11:37,241 [wrapper] ==== pilot stdout END ====
[2026-01-26 19:11:37] 2026-01-26 19:11:37,246 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 19:11:37] 2026-01-26 19:11:37,253 [wrapper] pilotpid: 764736
[2026-01-26 19:11:37] 2026-01-26 19:11:37,257 [wrapper] Pilot exit status: 0
[2026-01-26 19:11:37] 2026-01-26 19:11:37,278 [wrapper] pandaids: 6983345428
[2026-01-26 19:11:37] 2026-01-26 19:11:37,348 [wrapper] cleanup supervisor_pilot  814205 764737
[2026-01-26 19:11:37] 2026-01-26 19:11:37,357 [wrapper] Test setup, not cleaning
[2026-01-26 19:11:37] 2026-01-26 19:11:37,364 [wrapper] apfmon messages muted
[2026-01-26 19:11:37] 2026-01-26 19:11:37,369 [wrapper] ==== wrapper stdout END ====
[2026-01-26 19:11:37] 2026-01-26 19:11:37,374 [wrapper] ==== wrapper stderr END ====
[2026-01-26 19:11:37]  *** Error codes and diagnostics ***
[2026-01-26 19:11:37]     "exeErrorCode": 0,
[2026-01-26 19:11:37]     "exeErrorDiag": "",
[2026-01-26 19:11:37]     "pilotErrorCode": 0,
[2026-01-26 19:11:37]     "pilotErrorDiag": "",
[2026-01-26 19:11:37]  *** Listing of results directory ***
[2026-01-26 19:11:37] total 663576
[2026-01-26 19:11:37] -rw-r--r-- 1 boinc boinc      5111 Jan 25 20:48 queuedata.json
[2026-01-26 19:11:37] -rw-r--r-- 1 boinc boinc    584422 Jan 25 20:48 pilot3.tar.gz
[2026-01-26 19:11:37] -rwx------ 1 boinc boinc     36322 Jan 25 20:49 runpilot2-wrapper.sh
[2026-01-26 19:11:37] -rw-rw-r-- 1 boinc boinc       100 Jan 26 17:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 19:11:37] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 17:12 run_atlas
[2026-01-26 19:11:37] -rw-rw-r-- 1 boinc boinc       105 Jan 26 17:12 job.xml
[2026-01-26 19:11:37] -rw-r--r-- 2 boinc boinc 489702950 Jan 26 17:12 EVNT.48317869._000029.pool.root.1
[2026-01-26 19:11:37] -rw-r--r-- 2 boinc boinc     15845 Jan 26 17:12 start_atlas.sh
[2026-01-26 19:11:37] drwxrwx--x 2 boinc boinc      4096 Jan 26 17:12 shared
[2026-01-26 19:11:37] -rw-r--r-- 2 boinc boinc    597752 Jan 26 17:12 input.tar.gz
[2026-01-26 19:11:37] -rw-rw-r-- 1 boinc boinc      6153 Jan 26 17:12 init_data.xml
[2026-01-26 19:11:37] -rw-rw-r-- 1 boinc boinc         0 Jan 26 17:12 boinc_setup_complete
[2026-01-26 19:11:37] -rw-rw-r-- 1 boinc boinc         0 Jan 26 17:12 boinc_lockfile
[2026-01-26 19:11:37] -rw-rw-r-- 1 boinc boinc      2514 Jan 26 17:12 pandaJob.out
[2026-01-26 19:11:37] -rw------- 1 boinc boinc   1006276 Jan 26 17:13 agis_schedconf.cvmfs.json
[2026-01-26 19:11:37] -rw------- 1 boinc boinc   1516246 Jan 26 17:13 agis_ddmendpoints.agis.ALL.json
[2026-01-26 19:11:37] -rw------- 1 boinc boinc       425 Jan 26 17:13 workernode_map.json
[2026-01-26 19:11:37] drwx------ 5 boinc boinc      4096 Jan 26 17:13 pilot3
[2026-01-26 19:11:37] -rw------- 1 boinc boinc 182876775 Jan 26 19:09 HITS.48317872._001451.pool.root.1
[2026-01-26 19:11:37] -rw-rw-r-- 1 boinc boinc       530 Jan 26 19:10 boinc_task_state.xml
[2026-01-26 19:11:37] -rw------- 1 boinc boinc      1042 Jan 26 19:10 memory_monitor_summary.json
[2026-01-26 19:11:37] -rw------- 1 boinc boinc        95 Jan 26 19:10 pilot_heartbeat.json
[2026-01-26 19:11:37] -rw------- 1 boinc boinc    456141 Jan 26 19:10 log.48317872._001451.job.log.tgz.1
[2026-01-26 19:11:37] -rw------- 1 boinc boinc      6331 Jan 26 19:10 heartbeat.json
[2026-01-26 19:11:37] -rw-rw-r-- 1 boinc boinc        27 Jan 26 19:11 wrapper_checkpoint.txt
[2026-01-26 19:11:37] -rw-rw-r-- 1 boinc boinc      8192 Jan 26 19:11 boinc_mmap_file
[2026-01-26 19:11:37] -rw------- 1 boinc boinc      5027 Jan 26 19:11 pilotlog.txt
[2026-01-26 19:11:37] -rw------- 1 boinc boinc   1032228 Jan 26 19:11 log.48317872._001451.job.log.1
[2026-01-26 19:11:37] -rw------- 1 boinc boinc       357 Jan 26 19:11 output.list
[2026-01-26 19:11:37] -rw-rw-r-- 1 boinc boinc       620 Jan 26 19:11 runtime_log
[2026-01-26 19:11:37] -rw------- 1 boinc boinc   1505280 Jan 26 19:11 result.tar.gz
[2026-01-26 19:11:37] -rw------- 1 boinc boinc       653 Jan 26 19:11 yQgNDmqDM48n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1l1KDmcwyUFm.diag
[2026-01-26 19:11:37] -rw-rw-r-- 1 boinc boinc      9171 Jan 26 19:11 runtime_log.err
[2026-01-26 19:11:37] -rw-rw-r-- 1 boinc boinc     20705 Jan 26 19:11 stderr.txt
[2026-01-26 19:11:37] HITS file was successfully produced:
[2026-01-26 19:11:37] -rw------- 1 boinc boinc 182876775 Jan 26 19:09 shared/HITS.pool.root.1
[2026-01-26 19:11:37]  *** Contents of shared directory: ***
[2026-01-26 19:11:37] total 658900
[2026-01-26 19:11:37] -rw-r--r-- 2 boinc boinc 489702950 Jan 26 17:12 ATLAS.root_0
[2026-01-26 19:11:37] -rw-r--r-- 2 boinc boinc     15845 Jan 26 17:12 start_atlas.sh
[2026-01-26 19:11:37] -rw-r--r-- 2 boinc boinc    597752 Jan 26 17:12 input.tar.gz
[2026-01-26 19:11:37] -rw------- 1 boinc boinc 182876775 Jan 26 19:09 HITS.pool.root.1
[2026-01-26 19:11:37] -rw------- 1 boinc boinc   1505280 Jan 26 19:11 result.tar.gz
19:11:38 (760565): run_atlas exited; CPU time 54373.245244
19:11:38 (760565): called boinc_finish(0)

</stderr_txt>
]]>

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