Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:35:05 (27480): wrapper (7.7.26015): starting
08:35:05 (27480): wrapper: running run_atlas (--nthreads 8)
[2026-01-26 08:35:05] Arguments: --nthreads 8
[2026-01-26 08:35:05] Threads: 8
[2026-01-26 08:35:05] Checking for CVMFS
[2026-01-26 08:35:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 08:35:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 08:35:05] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 08:35:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 08:35:05] 2.11.2.0 28025 59603 131644 155538 2 60 22681037 25165825 941 130560 0 20285815 99.821 15960028 3601 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-26 08:35:05] CVMFS is ok
[2026-01-26 08:35:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 08:35:05] Checking for apptainer binary...
[2026-01-26 08:35:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 08:35:05] Running /usr/bin/apptainer --version
[2026-01-26 08:35:05] apptainer version 1.3.2-1.el7
[2026-01-26 08:35:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 08:35:07] cg-vwn402.simple-grid.lan
[2026-01-26 08:35:07] apptainer works
[2026-01-26 08:35:07] Set ATHENA_PROC_NUMBER=8
[2026-01-26 08:35:07] Set ATHENA_CORE_NUMBER=8
[2026-01-26 08:35:07] Starting ATLAS job with PandaID=6983212488
[2026-01-26 08:35:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 12:30:08]  *** The last 200 lines of the pilot log: ***
[2026-01-26 12:30:08] 2026-01-26 11:29:07,320 | INFO     | total number of processed events: 400 (read)
[2026-01-26 12:30:08] 2026-01-26 11:29:07,322 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6983212488/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 12:30:08] 2026-01-26 11:29:07,323 | INFO     | extracted standard info from prmon json
[2026-01-26 12:30:08] 2026-01-26 11:29:07,323 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 12:30:08] 2026-01-26 11:29:07,323 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 12:30:08] 2026-01-26 11:29:07,323 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 12:30:08] 2026-01-26 11:29:07,323 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 12:30:08] 2026-01-26 11:29:07,328 | INFO     | fitting pss+swap vs Time
[2026-01-26 12:30:08] 2026-01-26 11:29:07,329 | INFO     | sum of square deviations: 3772712597.5
[2026-01-26 12:30:08] 2026-01-26 11:29:07,331 | INFO     | sum of deviations: 30841222623.5
[2026-01-26 12:30:08] 2026-01-26 11:29:07,331 | INFO     | mean x: 1769419945.5
[2026-01-26 12:30:08] 2026-01-26 11:29:07,331 | INFO     | mean y: 2446728.708695652
[2026-01-26 12:30:08] 2026-01-26 11:29:07,331 | INFO     | intersect: -14462231680.611013
[2026-01-26 12:30:08] 2026-01-26 11:29:07,332 | INFO     | chi2: 3.72110845791425
[2026-01-26 12:30:08] 2026-01-26 11:29:07,332 | INFO     | sum of square deviations: 3531973200.0
[2026-01-26 12:30:08] 2026-01-26 11:29:07,334 | INFO     | sum of deviations: 61000082654.99999
[2026-01-26 12:30:08] 2026-01-26 11:29:07,334 | INFO     | mean x: 1769419793.0
[2026-01-26 12:30:08] 2026-01-26 11:29:07,334 | INFO     | mean y: 2465574.422222222
[2026-01-26 12:30:08] 2026-01-26 11:29:07,334 | INFO     | intersect: -30556869820.41967
[2026-01-26 12:30:08] 2026-01-26 11:29:07,335 | INFO     | chi2: 2.0718565233158843
[2026-01-26 12:30:08] 2026-01-26 11:29:07,335 | INFO     | current chi2=2.0718565233158843 (change=44.32152282717398 %)
[2026-01-26 12:30:08] 2026-01-26 11:29:07,335 | INFO     | sum of square deviations: 3301699115.0
[2026-01-26 12:30:08] 2026-01-26 11:29:07,340 | INFO     | sum of deviations: 59474662487.0
[2026-01-26 12:30:08] 2026-01-26 11:29:07,340 | INFO     | mean x: 1769419640.5
[2026-01-26 12:30:08] 2026-01-26 11:29:07,340 | INFO     | mean y: 2464564.0545454547
[2026-01-26 12:30:08] 2026-01-26 11:29:07,340 | INFO     | intersect: -31870711110.40614
[2026-01-26 12:30:08] 2026-01-26 11:29:07,341 | INFO     | chi2: 2.0722841012677864
[2026-01-26 12:30:08] 2026-01-26 11:29:07,341 | INFO     | current chi2=2.0722841012677864 (change=-0.02063743058895585 %)
[2026-01-26 12:30:08] 2026-01-26 11:29:07,341 | INFO     | right removable region: 219
[2026-01-26 12:30:08] 2026-01-26 11:29:07,341 | INFO     | sum of square deviations: 3531973200.0
[2026-01-26 12:30:08] 2026-01-26 11:29:07,343 | INFO     | sum of deviations: -18341731930.0
[2026-01-26 12:30:08] 2026-01-26 11:29:07,343 | INFO     | mean x: 1769420098.0
[2026-01-26 12:30:08] 2026-01-26 11:29:07,343 | INFO     | mean y: 2477717.0755555555
[2026-01-26 12:30:08] 2026-01-26 11:29:07,343 | INFO     | intersect: 9191174026.852291
[2026-01-26 12:30:08] 2026-01-26 11:29:07,344 | INFO     | chi2: 1.7222052375506796
[2026-01-26 12:30:08] 2026-01-26 11:29:07,344 | INFO     | current chi2=1.7222052375506796 (change=53.717951061388646 %)
[2026-01-26 12:30:08] 2026-01-26 11:29:07,344 | INFO     | sum of square deviations: 3301699115.0
[2026-01-26 12:30:08] 2026-01-26 11:29:07,346 | INFO     | sum of deviations: -19804557649.499992
[2026-01-26 12:30:08] 2026-01-26 11:29:07,346 | INFO     | mean x: 1769420250.5
[2026-01-26 12:30:08] 2026-01-26 11:29:07,346 | INFO     | mean y: 2478646.668181818
[2026-01-26 12:30:08] 2026-01-26 11:29:07,346 | INFO     | intersect: 10615979191.892748
[2026-01-26 12:30:08] 2026-01-26 11:29:07,347 | INFO     | chi2: 1.7030782238868336
[2026-01-26 12:30:08] 2026-01-26 11:29:07,347 | INFO     | current chi2=1.7030782238868336 (change=1.1106117463124423 %)
[2026-01-26 12:30:08] 2026-01-26 11:29:07,347 | INFO     | left removable region: 20
[2026-01-26 12:30:08] 2026-01-26 11:29:07,347 | INFO     | sum of square deviations: 2443580700.0
[2026-01-26 12:30:08] 2026-01-26 11:29:07,349 | INFO     | sum of deviations: 6083006254.0
[2026-01-26 12:30:08] 2026-01-26 11:29:07,349 | INFO     | mean x: 1769420220.0
[2026-01-26 12:30:08] 2026-01-26 11:29:07,349 | INFO     | mean y: 2501629.713567839
[2026-01-26 12:30:08] 2026-01-26 11:29:07,349 | INFO     | intersect: -4402261537.802879
[2026-01-26 12:30:08] 2026-01-26 11:29:07,350 | INFO     | chi2: 0.0008219461715816041
[2026-01-26 12:30:08] 2026-01-26 11:29:07,350 | INFO     | current memory leak: 2.49 B/s (using 199 data points, chi2=0.00)
[2026-01-26 12:30:08] 2026-01-26 11:29:07,351 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2026-01-26 12:30:08] 2026-01-26 11:29:07,351 | INFO     | ..............................
[2026-01-26 12:30:08] 2026-01-26 11:29:07,351 | INFO     | . Timing measurements:
[2026-01-26 12:30:08] 2026-01-26 11:29:07,351 | INFO     | . get job = 0 s
[2026-01-26 12:30:08] 2026-01-26 11:29:07,351 | INFO     | . initial setup = 7 s
[2026-01-26 12:30:08] 2026-01-26 11:29:07,351 | INFO     | . payload setup = 8 s
[2026-01-26 12:30:08] 2026-01-26 11:29:07,351 | INFO     | . stage-in = 0 s
[2026-01-26 12:30:08] 2026-01-26 11:29:07,351 | INFO     | . payload execution = 13982 s
[2026-01-26 12:30:08] 2026-01-26 11:29:07,352 | INFO     | . stage-out = 4 s
[2026-01-26 12:30:08] 2026-01-26 11:29:07,352 | INFO     | . log creation = 1 s
[2026-01-26 12:30:08] 2026-01-26 11:29:07,352 | INFO     | ..............................
[2026-01-26 12:30:08] 2026-01-26 11:29:07,514 | INFO     | 
[2026-01-26 12:30:08] 2026-01-26 11:29:07,514 | INFO     | job summary report
[2026-01-26 12:30:08] 2026-01-26 11:29:07,514 | INFO     | --------------------------------------------------
[2026-01-26 12:30:08] 2026-01-26 11:29:07,515 | INFO     | PanDA job id: 6983212488
[2026-01-26 12:30:08] 2026-01-26 11:29:07,515 | INFO     | task id: 48301086
[2026-01-26 12:30:08] 2026-01-26 11:29:07,515 | INFO     | errors: (none)
[2026-01-26 12:30:08] 2026-01-26 11:29:07,515 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 12:30:08] 2026-01-26 11:29:07,515 | INFO     | pilot state: finished 
[2026-01-26 12:30:08] 2026-01-26 11:29:07,515 | INFO     | transexitcode: 0
[2026-01-26 12:30:08] 2026-01-26 11:29:07,515 | INFO     | exeerrorcode: 0
[2026-01-26 12:30:08] 2026-01-26 11:29:07,515 | INFO     | exeerrordiag: 
[2026-01-26 12:30:08] 2026-01-26 11:29:07,515 | INFO     | exitcode: 0
[2026-01-26 12:30:08] 2026-01-26 11:29:07,515 | INFO     | exitmsg: OK
[2026-01-26 12:30:08] 2026-01-26 11:29:07,516 | INFO     | cpuconsumptiontime: 54170 s
[2026-01-26 12:30:08] 2026-01-26 11:29:07,516 | INFO     | nevents: 400
[2026-01-26 12:30:08] 2026-01-26 11:29:07,516 | INFO     | neventsw: 0
[2026-01-26 12:30:08] 2026-01-26 11:29:07,516 | INFO     | pid: 3504
[2026-01-26 12:30:08] 2026-01-26 11:29:07,516 | INFO     | pgrp: 3504
[2026-01-26 12:30:08] 2026-01-26 11:29:07,516 | INFO     | corecount: 8
[2026-01-26 12:30:08] 2026-01-26 11:29:07,516 | INFO     | event service: False
[2026-01-26 12:30:08] 2026-01-26 11:29:07,516 | INFO     | sizes: {0: 2283800, 1: 2284261, 11: 2284261, 13995: 2314639, 14000: 2323637, 14002: 2323693, 14004: 2324015}
[2026-01-26 12:30:08] 2026-01-26 11:29:07,516 | INFO     | --------------------------------------------------
[2026-01-26 12:30:08] 2026-01-26 11:29:07,517 | INFO     | 
[2026-01-26 12:30:08] 2026-01-26 11:29:07,517 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-01-26 12:30:08] 2026-01-26 11:29:07,640 | INFO     | PID=31474 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-26 12:30:08] 2026-01-26 11:29:07,641 | INFO     | .. there are 2 such processes running
[2026-01-26 12:30:08] 2026-01-26 11:29:08,041 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 12:30:08] 2026-01-26 11:29:08,042 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 12:30:08] 2026-01-26 11:29:08,042 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 12:30:08] 2026-01-26 11:29:08,042 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 12:30:08] 2026-01-26 11:29:08,042 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 12:30:08] 2026-01-26 11:29:08,042 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 12:30:08] 2026-01-26 11:29:08,042 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 12:30:08] 2026-01-26 11:29:08,042 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 12:30:08] 2026-01-26 11:29:08,042 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 12:30:08] 2026-01-26 11:29:08,043 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 12:30:08] 2026-01-26 11:29:08,043 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 12:30:08] 2026-01-26 11:29:08,043 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 12:30:08] 2026-01-26 11:29:08,043 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 12:30:08] 2026-01-26 11:29:08,043 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 12:30:08] 2026-01-26 11:29:08,043 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 12:30:08] 2026-01-26 11:29:08,043 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 12:30:08] 2026-01-26 11:29:08,043 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 12:30:08] 2026-01-26 11:29:08,043 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 12:30:08] 2026-01-26 11:29:08,044 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 12:30:08] 2026-01-26 11:29:08,044 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 12:30:08] 2026-01-26 11:29:08,044 | INFO     | job 6983212488 has completed (purged errors)
[2026-01-26 12:30:08] 2026-01-26 11:29:08,044 | INFO     | overall cleanup function is called
[2026-01-26 12:30:08] 2026-01-26 11:29:09,053 | INFO     | --- collectZombieJob: --- 10, [3504]
[2026-01-26 12:30:08] 2026-01-26 11:29:09,053 | INFO     | zombie collector waiting for pid 3504
[2026-01-26 12:30:08] 2026-01-26 11:29:09,053 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 12:30:08] 2026-01-26 11:29:09,054 | INFO     | collected zombie processes
[2026-01-26 12:30:08] 2026-01-26 11:29:09,054 | INFO     | will attempt to kill all subprocesses of pid=3504
[2026-01-26 12:30:08] 2026-01-26 11:29:09,150 | INFO     | process IDs to be killed: [3504] (in reverse order)
[2026-01-26 12:30:08] 2026-01-26 11:29:10,099 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 12:30:08] 2026-01-26 11:29:10,099 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 12:30:08] 2026-01-26 11:29:10,101 | INFO     | did not find any defunct processes belonging to 3504
[2026-01-26 12:30:08] 2026-01-26 11:29:10,103 | INFO     | did not find any defunct processes belonging to 3504
[2026-01-26 12:30:08] 2026-01-26 11:29:10,103 | INFO     | ready for new job
[2026-01-26 12:30:08] 2026-01-26 11:29:10,103 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 12:30:08] 2026-01-26 11:29:10,105 | INFO     | **************************************
[2026-01-26 12:30:08] 2026-01-26 11:29:10,105 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 12:30:08] 2026-01-26 11:29:10,105 | INFO     | **************************************
[2026-01-26 12:30:08] 2026-01-26 11:29:10,106 | INFO     | 
[2026-01-26 12:30:08] 2026-01-26 11:29:10,106 | INFO     | pilot is running in a VM
[2026-01-26 12:30:08] 2026-01-26 11:29:10,106 | INFO     | architecture information:
[2026-01-26 12:30:08] 2026-01-26 11:29:10,114 | INFO     | executing command: cat /etc/os-release
[2026-01-26 12:30:08] 2026-01-26 11:29:10,443 | INFO     | cat /etc/os-release:
[2026-01-26 12:30:08] NAME="CentOS Linux"
[2026-01-26 12:30:08] VERSION="7 (Core)"
[2026-01-26 12:30:08] ID="centos"
[2026-01-26 12:30:08] ID_LIKE="rhel fedora"
[2026-01-26 12:30:08] VERSION_ID="7"
[2026-01-26 12:30:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 12:30:08] ANSI_COLOR="0;31"
[2026-01-26 12:30:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 12:30:08] HOME_URL="https://www.centos.org/"
[2026-01-26 12:30:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 12:30:08] 
[2026-01-26 12:30:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 12:30:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 12:30:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 12:30:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 12:30:08] 
[2026-01-26 12:30:08] 2026-01-26 11:29:10,444 | INFO     | **************************************
[2026-01-26 12:30:08] 2026-01-26 11:29:10,947 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-01-26 12:30:08] 2026-01-26 11:29:11,212 | INFO     | sufficient remaining disk space (495756247040 B)
[2026-01-26 12:30:08] 2026-01-26 11:29:11,212 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 12:30:08] 2026-01-26 11:29:11,212 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 12:30:08] 2026-01-26 11:29:11,213 | INFO     | update_server=False
[2026-01-26 12:30:08] 2026-01-26 11:29:11,213 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 12:30:08] 2026-01-26 11:29:11,394 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 12:30:08] 2026-01-26 11:29:11,394 | INFO     | aborting loop
[2026-01-26 12:30:08] 2026-01-26 11:29:11,501 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 12:30:08] 2026-01-26 11:29:11,522 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 12:30:08] 2026-01-26 11:29:11,726 | INFO     | all data control threads have been joined
[2026-01-26 12:30:08] 2026-01-26 11:29:11,999 | INFO     | all payload control threads have been joined
[2026-01-26 12:30:08] 2026-01-26 11:29:12,219 | INFO     | [job] retrieve thread has finished
[2026-01-26 12:30:08] 2026-01-26 11:29:12,252 | INFO     | [payload] failed_post thread has finished
[2026-01-26 12:30:08] 2026-01-26 11:29:12,400 | INFO     | [job] job monitor thread has finished
[2026-01-26 12:30:08] 2026-01-26 11:29:12,413 | INFO     | [job] validate thread has finished
[2026-01-26 12:30:08] 2026-01-26 11:29:12,525 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 12:30:08] 2026-01-26 11:29:12,532 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 12:30:08] 2026-01-26 11:29:12,634 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 12:30:08] 2026-01-26 11:29:12,732 | INFO     | [data] control thread has finished
[2026-01-26 12:30:08] 2026-01-26 11:29:12,744 | INFO     | [data] copytool_in thread has finished
[2026-01-26 12:30:08] 2026-01-26 11:29:12,762 | INFO     | all job control threads have been joined
[2026-01-26 12:30:08] 2026-01-26 11:29:13,005 | INFO     | [payload] control thread has finished
[2026-01-26 12:30:08] 2026-01-26 11:29:13,055 | INFO     | [payload] validate_post thread has finished
[2026-01-26 12:30:08] 2026-01-26 11:29:13,096 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 12:30:08] 2026-01-26 11:29:13,529 | INFO     | [data] copytool_out thread has finished
[2026-01-26 12:30:08] 2026-01-26 11:29:13,538 | INFO     | [job] queue monitor thread has finished
[2026-01-26 12:30:08] 2026-01-26 11:29:13,605 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 12:30:08] 2026-01-26 11:29:13,768 | INFO     | [job] control thread has finished
[2026-01-26 12:30:08] 2026-01-26 11:29:15,511 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 12:30:08] 2026-01-26 11:29:39,766 | INFO     | PID=31474 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-26 12:30:08] 2026-01-26 11:29:39,766 | INFO     | .. there are 2 such processes running
[2026-01-26 12:30:08] 2026-01-26 11:29:39,767 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 12:30:08] 2026-01-26 11:29:39,767 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 12:30:08] 2026-01-26 11:29:39,767 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 12:30:08] 2026-01-26 11:29:56,518 | INFO     | [monitor] cgroup control has ended
[2026-01-26 12:30:08] 2026-01-26 11:29:57,738 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139854210078528)>', '<ExcThread(monitor, started 139853756868352)>']
[2026-01-26 12:30:08] 2026-01-26 11:29:57,875 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 12:30:08] 2026-01-26 11:29:57,875 | INFO     | [monitor] control thread has ended
[2026-01-26 12:30:08] 2026-01-26 11:30:02,764 | INFO     | all workflow threads have been joined
[2026-01-26 12:30:08] 2026-01-26 11:30:02,764 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 12:30:08] 2026-01-26 11:30:02,764 | INFO     | traces error code: 0
[2026-01-26 12:30:08] 2026-01-26 11:30:02,765 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 12:30:08] 2026-01-26 11:30:03,171 [wrapper] ==== pilot stdout END ====
[2026-01-26 12:30:08] 2026-01-26 11:30:03,233 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 12:30:08] 2026-01-26 11:30:03,325 [wrapper] pilotpid: 31474
[2026-01-26 12:30:08] 2026-01-26 11:30:03,424 [wrapper] Pilot exit status: 0
[2026-01-26 12:30:08] 2026-01-26 11:30:03,906 [wrapper] pandaids: 6983212488
[2026-01-26 12:30:08] 2026-01-26 11:30:04,857 [wrapper] cleanup supervisor_pilot  9250 31475
[2026-01-26 12:30:08] 2026-01-26 11:30:04,958 [wrapper] Test setup, not cleaning
[2026-01-26 12:30:08] 2026-01-26 11:30:05,041 [wrapper] apfmon messages muted
[2026-01-26 12:30:08] 2026-01-26 11:30:05,139 [wrapper] ==== wrapper stdout END ====
[2026-01-26 12:30:08] 2026-01-26 11:30:05,209 [wrapper] ==== wrapper stderr END ====
[2026-01-26 12:30:08]  *** Error codes and diagnostics ***
[2026-01-26 12:30:08]     "exeErrorCode": 0,
[2026-01-26 12:30:08]     "exeErrorDiag": "",
[2026-01-26 12:30:08]     "pilotErrorCode": 0,
[2026-01-26 12:30:08]     "pilotErrorDiag": "",
[2026-01-26 12:30:08]  *** Listing of results directory ***
[2026-01-26 12:30:08] total 670044
[2026-01-26 12:30:08] -rw-r--r--. 1 boinc boinc    584422 Jan 25 17:28 pilot3.tar.gz
[2026-01-26 12:30:08] -rwx------. 1 boinc boinc     36322 Jan 25 17:28 runpilot2-wrapper.sh
[2026-01-26 12:30:08] -rw-r--r--. 1 boinc boinc      5111 Jan 25 17:28 queuedata.json
[2026-01-26 12:30:08] -rw-r--r--. 1 boinc boinc       100 Jan 26 08:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 12:30:08] -rwxr-xr-x. 1 boinc boinc      7986 Jan 26 08:35 run_atlas
[2026-01-26 12:30:08] -rw-r--r--. 1 boinc boinc       105 Jan 26 08:35 job.xml
[2026-01-26 12:30:08] -rw-r--r--. 2 boinc boinc 490007085 Jan 26 08:35 EVNT.48301084._000032.pool.root.1
[2026-01-26 12:30:08] -rw-r--r--. 1 boinc boinc      6389 Jan 26 08:35 init_data.xml
[2026-01-26 12:30:08] -rw-r--r--. 2 boinc boinc     15845 Jan 26 08:35 start_atlas.sh
[2026-01-26 12:30:08] drwxrwx--x. 2 boinc boinc        68 Jan 26 08:35 shared
[2026-01-26 12:30:08] -rw-r--r--. 2 boinc boinc    597760 Jan 26 08:35 input.tar.gz
[2026-01-26 12:30:08] -rw-r--r--. 1 boinc boinc         0 Jan 26 08:35 boinc_lockfile
[2026-01-26 12:30:08] -rw-r--r--. 1 boinc boinc      2516 Jan 26 08:35 pandaJob.out
[2026-01-26 12:30:08] -rw-------. 1 boinc boinc   1004254 Jan 26 08:35 agis_schedconf.cvmfs.json
[2026-01-26 12:30:08] -rw-------. 1 boinc boinc       415 Jan 26 08:35 workernode_map.json
[2026-01-26 12:30:08] drwx------. 5 boinc boinc      4096 Jan 26 08:35 pilot3
[2026-01-26 12:30:08] -rw-------. 1 boinc boinc 187332795 Jan 26 12:27 HITS.48301086._010845.pool.root.1
[2026-01-26 12:30:08] -rw-r--r--. 1 boinc boinc       531 Jan 26 12:27 boinc_task_state.xml
[2026-01-26 12:30:08] -rw-------. 1 boinc boinc      1024 Jan 26 12:28 memory_monitor_summary.json
[2026-01-26 12:30:08] -rw-------. 1 boinc boinc   1516246 Jan 26 12:29 agis_ddmendpoints.agis.ALL.json
[2026-01-26 12:30:08] -rw-------. 1 boinc boinc    461639 Jan 26 12:29 log.48301086._010845.job.log.tgz.1
[2026-01-26 12:30:08] -rw-------. 1 boinc boinc      6307 Jan 26 12:29 heartbeat.json
[2026-01-26 12:30:08] -rw-------. 1 boinc boinc        95 Jan 26 12:29 pilot_heartbeat.json
[2026-01-26 12:30:08] -rw-r--r--. 1 boinc boinc      8192 Jan 26 12:29 boinc_mmap_file
[2026-01-26 12:30:08] -rw-r--r--. 1 boinc boinc        28 Jan 26 12:29 wrapper_checkpoint.txt
[2026-01-26 12:30:08] -rw-------. 1 boinc boinc      4880 Jan 26 12:30 pilotlog.txt
[2026-01-26 12:30:08] -rw-------. 1 boinc boinc   1970104 Jan 26 12:30 log.48301086._010845.job.log.1
[2026-01-26 12:30:08] -rw-------. 1 boinc boinc       357 Jan 26 12:30 output.list
[2026-01-26 12:30:08] -rw-r--r--. 1 boinc boinc       620 Jan 26 12:30 runtime_log
[2026-01-26 12:30:08] -rw-------. 1 boinc boinc   2447360 Jan 26 12:30 result.tar.gz
[2026-01-26 12:30:08] -rw-------. 1 boinc boinc       655 Jan 26 12:30 Yl2NDmj9H48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSE1KDmgl3CIm.diag
[2026-01-26 12:30:08] -rw-r--r--. 1 boinc boinc      8816 Jan 26 12:30 runtime_log.err
[2026-01-26 12:30:08] -rw-r--r--. 1 boinc boinc     20784 Jan 26 12:30 stderr.txt
[2026-01-26 12:30:08] HITS file was successfully produced:
[2026-01-26 12:30:08] -rw-------. 1 boinc boinc 187332795 Jan 26 12:27 shared/HITS.pool.root.1
[2026-01-26 12:30:08]  *** Contents of shared directory: ***
[2026-01-26 12:30:08] total 664460
[2026-01-26 12:30:08] -rw-r--r--. 2 boinc boinc 490007085 Jan 26 08:35 ATLAS.root_0
[2026-01-26 12:30:08] -rw-r--r--. 2 boinc boinc     15845 Jan 26 08:35 start_atlas.sh
[2026-01-26 12:30:08] -rw-r--r--. 2 boinc boinc    597760 Jan 26 08:35 input.tar.gz
[2026-01-26 12:30:08] -rw-------. 1 boinc boinc 187332795 Jan 26 12:27 HITS.pool.root.1
[2026-01-26 12:30:08] -rw-------. 1 boinc boinc   2447360 Jan 26 12:30 result.tar.gz
12:30:10 (27480): run_atlas exited; CPU time 54308.639184
12:30:10 (27480): called boinc_finish(0)

</stderr_txt>
]]>

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