Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:32 (3610876): wrapper (7.7.26015): starting
00:04:32 (3610876): wrapper: running run_atlas (--nthreads 12)
[2026-01-26 00:04:32] Arguments: --nthreads 12
[2026-01-26 00:04:32] Threads: 12
[2026-01-26 00:04:32] Checking for CVMFS
[2026-01-26 00:04:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 00:04:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 00:04:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 00:04:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 00:04:36] 2.13.3.0 13037 54113 435392 155532 1 656 19852295 32935936 29974 16776704 0 74677978 99.615 73802807 13224 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-26 00:04:36] CVMFS is ok
[2026-01-26 00:04:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 00:04:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 00:04:36] Further information can be found at the LHC@home message board.
[2026-01-26 00:04:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 00:04:36] Checking for apptainer binary...
[2026-01-26 00:04:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 00:04:36] Running /usr/bin/apptainer --version
[2026-01-26 00:04:36] apptainer version 1.4.5-2.el9
[2026-01-26 00:04:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 00:04:37] c6-12-25-3.aglt2.org
[2026-01-26 00:04:37] apptainer works
[2026-01-26 00:04:37] Set ATHENA_PROC_NUMBER=12
[2026-01-26 00:04:38] Set ATHENA_CORE_NUMBER=12
[2026-01-26 00:04:38] Starting ATLAS job with PandaID=6983191446
[2026-01-26 00:04:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:16 (3610876): BOINC client no longer exists - exiting
00:20:16 (3610876): timer handler: client dead, exiting
00:21:57 (3682753): wrapper (7.7.26015): starting
00:21:57 (3682753): wrapper: running run_atlas (--nthreads 12)
[2026-01-26 00:21:57] Arguments: --nthreads 12
[2026-01-26 00:21:57] Threads: 12
[2026-01-26 00:21:57] This job has been restarted, cleaning up previous attempt
[2026-01-26 00:21:57] Checking for CVMFS
[2026-01-26 00:21:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 00:21:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 00:21:59] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 00:22:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 00:22:00] 2.13.3.0 13037 54131 415652 155534 0 132 19901514 32935936 25388 16776704 0 74778328 99.616 73805561 13224 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-26 00:22:00] CVMFS is ok
[2026-01-26 00:22:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 00:22:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 00:22:00] Further information can be found at the LHC@home message board.
[2026-01-26 00:22:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 00:22:00] Checking for apptainer binary...
[2026-01-26 00:22:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 00:22:00] Running /usr/bin/apptainer --version
[2026-01-26 00:22:00] apptainer version 1.4.5-2.el9
[2026-01-26 00:22:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 00:22:01] c6-12-25-3.aglt2.org
[2026-01-26 00:22:01] apptainer works
[2026-01-26 00:22:01] Set ATHENA_PROC_NUMBER=12
[2026-01-26 00:22:01] Set ATHENA_CORE_NUMBER=12
[2026-01-26 00:22:01] Starting ATLAS job with PandaID=6983191446
[2026-01-26 00:22:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 17:27:04]  *** The last 200 lines of the pilot log: ***
[2026-01-26 17:27:04] 2026-01-26 22:26:15,502 | INFO     | log transfer has been attempted: DONE
[2026-01-26 17:27:04] 2026-01-26 22:26:15,503 | INFO     | job 6983191446 has finished - writing final server update
[2026-01-26 17:27:04] 2026-01-26 22:26:15,503 | INFO     | total number of processed events: 400 (read)
[2026-01-26 17:27:04] 2026-01-26 22:26:15,651 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6983191446/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 17:27:04] 2026-01-26 22:26:15,660 | INFO     | extracted standard info from prmon json
[2026-01-26 17:27:04] 2026-01-26 22:26:15,660 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 17:27:04] 2026-01-26 22:26:15,660 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 17:27:04] 2026-01-26 22:26:15,666 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 17:27:04] 2026-01-26 22:26:15,666 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 17:27:04] 2026-01-26 22:26:15,775 | INFO     | fitting pss+swap vs Time
[2026-01-26 17:27:04] 2026-01-26 22:26:15,783 | INFO     | sum of square deviations: 315707233047.92523
[2026-01-26 17:27:04] 2026-01-26 22:26:15,856 | INFO     | sum of deviations: 667165968835.7485
[2026-01-26 17:27:04] 2026-01-26 22:26:15,857 | INFO     | mean x: 1769435688.3469186
[2026-01-26 17:27:04] 2026-01-26 22:26:15,857 | INFO     | mean y: 2690128.7256461233
[2026-01-26 17:27:04] 2026-01-26 22:26:15,857 | INFO     | intersect: -3736556716.877404
[2026-01-26 17:27:04] 2026-01-26 22:26:15,861 | INFO     | chi2: 6.574964964376536
[2026-01-26 17:27:04] 2026-01-26 22:26:15,864 | INFO     | sum of square deviations: 311024048453.85596
[2026-01-26 17:27:04] 2026-01-26 22:26:15,892 | INFO     | time since job start (61412s) is within the limit (349056.0s)
[2026-01-26 17:27:04] 2026-01-26 22:26:16,026 | INFO     | sum of deviations: 949080603680.0192
[2026-01-26 17:27:04] 2026-01-26 22:26:16,027 | INFO     | mean x: 1769435535.858142
[2026-01-26 17:27:04] 2026-01-26 22:26:16,027 | INFO     | mean y: 2699299.4085914087
[2026-01-26 17:27:04] 2026-01-26 22:26:16,027 | INFO     | intersect: -5396680442.747497
[2026-01-26 17:27:04] 2026-01-26 22:26:16,030 | INFO     | chi2: 3.5977830381165044
[2026-01-26 17:27:04] 2026-01-26 22:26:16,031 | INFO     | current chi2=3.5977830381165044 (change=45.280574761851064 %)
[2026-01-26 17:27:04] 2026-01-26 22:26:16,034 | INFO     | sum of square deviations: 306387177656.97205
[2026-01-26 17:27:04] 2026-01-26 22:26:16,089 | INFO     | sum of deviations: 942057428950.1193
[2026-01-26 17:27:04] 2026-01-26 22:26:16,089 | INFO     | mean x: 1769435383.3654618
[2026-01-26 17:27:04] 2026-01-26 22:26:16,089 | INFO     | mean y: 2699068.43373494
[2026-01-26 17:27:04] 2026-01-26 22:26:16,090 | INFO     | intersect: -5437834574.958126
[2026-01-26 17:27:04] 2026-01-26 22:26:16,093 | INFO     | chi2: 3.597327945546994
[2026-01-26 17:27:04] 2026-01-26 22:26:16,094 | INFO     | current chi2=3.597327945546994 (change=0.012649249960014866 %)
[2026-01-26 17:27:04] 2026-01-26 22:26:16,094 | INFO     | right removable region: 995
[2026-01-26 17:27:04] 2026-01-26 22:26:16,097 | INFO     | sum of square deviations: 311022608239.139
[2026-01-26 17:27:04] 2026-01-26 22:26:16,153 | INFO     | sum of deviations: 384030426676.2821
[2026-01-26 17:27:04] 2026-01-26 22:26:16,153 | INFO     | mean x: 1769435840.8591409
[2026-01-26 17:27:04] 2026-01-26 22:26:16,153 | INFO     | mean y: 2699338.072927073
[2026-01-26 17:27:04] 2026-01-26 22:26:16,154 | INFO     | intersect: -2182084606.697335
[2026-01-26 17:27:04] 2026-01-26 22:26:16,157 | INFO     | chi2: 3.985317971665785
[2026-01-26 17:27:04] 2026-01-26 22:26:16,158 | INFO     | current chi2=3.985317971665785 (change=39.386475924078354 %)
[2026-01-26 17:27:04] 2026-01-26 22:26:16,161 | INFO     | sum of square deviations: 306384542930.5501
[2026-01-26 17:27:04] 2026-01-26 22:26:16,215 | INFO     | sum of deviations: 265703690542.96118
[2026-01-26 17:27:04] 2026-01-26 22:26:16,216 | INFO     | mean x: 1769435993.371486
[2026-01-26 17:27:04] 2026-01-26 22:26:16,216 | INFO     | mean y: 2703227.6676706825
[2026-01-26 17:27:04] 2026-01-26 22:26:16,217 | INFO     | intersect: -1531792178.404185
[2026-01-26 17:27:04] 2026-01-26 22:26:16,220 | INFO     | chi2: 3.597981136900123
[2026-01-26 17:27:04] 2026-01-26 22:26:16,220 | INFO     | current chi2=3.597981136900123 (change=9.719094875728638 %)
[2026-01-26 17:27:04] 2026-01-26 22:26:16,221 | INFO     | left removable region: 20
[2026-01-26 17:27:04] 2026-01-26 22:26:16,224 | INFO     | sum of square deviations: 287410809222.2713
[2026-01-26 17:27:04] 2026-01-26 22:26:16,276 | INFO     | sum of deviations: 392152969626.8618
[2026-01-26 17:27:04] 2026-01-26 22:26:16,277 | INFO     | mean x: 1769435962.916923
[2026-01-26 17:27:04] 2026-01-26 22:26:16,277 | INFO     | mean y: 2717439.553846154
[2026-01-26 17:27:04] 2026-01-26 22:26:16,277 | INFO     | intersect: -2411560469.1305566
[2026-01-26 17:27:04] 2026-01-26 22:26:16,281 | INFO     | chi2: 0.3037755504747714
[2026-01-26 17:27:04] 2026-01-26 22:26:16,281 | INFO     | current memory leak: 1.36 B/s (using 975 data points, chi2=0.30)
[2026-01-26 17:27:04] 2026-01-26 22:26:16,283 | INFO     | could have reported an average CPU frequency of 999 MHz (37 samples)
[2026-01-26 17:27:04] 2026-01-26 22:26:16,284 | INFO     | ..............................
[2026-01-26 17:27:04] 2026-01-26 22:26:16,284 | INFO     | . Timing measurements:
[2026-01-26 17:27:04] 2026-01-26 22:26:16,284 | INFO     | . get job = 0 s
[2026-01-26 17:27:04] 2026-01-26 22:26:16,284 | INFO     | . initial setup = 3 s
[2026-01-26 17:27:04] 2026-01-26 22:26:16,285 | INFO     | . payload setup = 29 s
[2026-01-26 17:27:04] 2026-01-26 22:26:16,285 | INFO     | . stage-in = 0 s
[2026-01-26 17:27:04] 2026-01-26 22:26:16,285 | INFO     | . payload execution = 61345 s
[2026-01-26 17:27:04] 2026-01-26 22:26:16,285 | INFO     | . stage-out = 12 s
[2026-01-26 17:27:04] 2026-01-26 22:26:16,285 | INFO     | . log creation = 2 s
[2026-01-26 17:27:04] 2026-01-26 22:26:16,286 | INFO     | ..............................
[2026-01-26 17:27:04] 2026-01-26 22:26:16,920 | INFO     | 
[2026-01-26 17:27:04] 2026-01-26 22:26:16,920 | INFO     | job summary report
[2026-01-26 17:27:04] 2026-01-26 22:26:16,921 | INFO     | --------------------------------------------------
[2026-01-26 17:27:04] 2026-01-26 22:26:16,921 | INFO     | PanDA job id: 6983191446
[2026-01-26 17:27:04] 2026-01-26 22:26:16,921 | INFO     | task id: 47929408
[2026-01-26 17:27:04] 2026-01-26 22:26:16,921 | INFO     | errors: (none)
[2026-01-26 17:27:04] 2026-01-26 22:26:16,922 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 17:27:04] 2026-01-26 22:26:16,922 | INFO     | pilot state: finished 
[2026-01-26 17:27:04] 2026-01-26 22:26:16,922 | INFO     | transexitcode: 0
[2026-01-26 17:27:04] 2026-01-26 22:26:16,922 | INFO     | exeerrorcode: 0
[2026-01-26 17:27:04] 2026-01-26 22:26:16,922 | INFO     | exeerrordiag: 
[2026-01-26 17:27:04] 2026-01-26 22:26:16,923 | INFO     | exitcode: 0
[2026-01-26 17:27:04] 2026-01-26 22:26:16,923 | INFO     | exitmsg: OK
[2026-01-26 17:27:04] 2026-01-26 22:26:16,923 | INFO     | cpuconsumptiontime: 111494 s
[2026-01-26 17:27:04] 2026-01-26 22:26:16,923 | INFO     | nevents: 400
[2026-01-26 17:27:04] 2026-01-26 22:26:16,923 | INFO     | neventsw: 0
[2026-01-26 17:27:04] 2026-01-26 22:26:16,946 | INFO     | pid: 3726569
[2026-01-26 17:27:04] 2026-01-26 22:26:16,946 | INFO     | pgrp: 3726569
[2026-01-26 17:27:04] 2026-01-26 22:26:16,946 | INFO     | corecount: 12
[2026-01-26 17:27:04] 2026-01-26 22:26:16,947 | INFO     | event service: False
[2026-01-26 17:27:04] 2026-01-26 22:26:16,947 | INFO     | sizes: {0: 2283871, 1: 2283899, 2: 2284332, 3: 2284360, 13: 2284388, 61382: 2332920, 61397: 2341918, 61398: 2341974, 61399: 2342168}
[2026-01-26 17:27:04] 2026-01-26 22:26:16,947 | INFO     | --------------------------------------------------
[2026-01-26 17:27:04] 2026-01-26 22:26:16,947 | INFO     | 
[2026-01-26 17:27:04] 2026-01-26 22:26:16,948 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-26 17:27:04] 2026-01-26 22:26:17,094 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 17:27:04] 2026-01-26 22:26:17,095 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 17:27:04] 2026-01-26 22:26:17,095 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 17:27:04] 2026-01-26 22:26:17,095 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 17:27:04] 2026-01-26 22:26:17,096 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 17:27:04] 2026-01-26 22:26:17,096 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 17:27:04] 2026-01-26 22:26:17,096 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 17:27:04] 2026-01-26 22:26:17,096 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 17:27:04] 2026-01-26 22:26:17,096 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 17:27:04] 2026-01-26 22:26:17,097 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 17:27:04] 2026-01-26 22:26:17,097 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 17:27:04] 2026-01-26 22:26:17,097 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 17:27:04] 2026-01-26 22:26:17,097 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 17:27:04] 2026-01-26 22:26:17,102 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 17:27:04] 2026-01-26 22:26:17,102 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 17:27:04] 2026-01-26 22:26:17,102 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 17:27:04] 2026-01-26 22:26:17,103 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 17:27:04] 2026-01-26 22:26:17,103 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 17:27:04] 2026-01-26 22:26:17,103 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 17:27:04] 2026-01-26 22:26:17,103 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 17:27:04] 2026-01-26 22:26:17,104 | INFO     | job 6983191446 has completed (purged errors)
[2026-01-26 17:27:04] 2026-01-26 22:26:17,104 | INFO     | overall cleanup function is called
[2026-01-26 17:27:04] 2026-01-26 22:26:18,126 | INFO     | --- collectZombieJob: --- 10, [3726569]
[2026-01-26 17:27:04] 2026-01-26 22:26:18,126 | INFO     | zombie collector waiting for pid 3726569
[2026-01-26 17:27:04] 2026-01-26 22:26:18,126 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 17:27:04] 2026-01-26 22:26:18,127 | INFO     | collected zombie processes
[2026-01-26 17:27:04] 2026-01-26 22:26:18,127 | INFO     | will attempt to kill all subprocesses of pid=3726569
[2026-01-26 17:27:04] 2026-01-26 22:26:22,964 | INFO     | process IDs to be killed: [3726569] (in reverse order)
[2026-01-26 17:27:04] 2026-01-26 22:26:23,724 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 17:27:04] 2026-01-26 22:26:23,725 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 17:27:04] 2026-01-26 22:26:23,805 | INFO     | did not find any defunct processes belonging to 3726569
[2026-01-26 17:27:04] 2026-01-26 22:26:23,885 | INFO     | did not find any defunct processes belonging to 3726569
[2026-01-26 17:27:04] 2026-01-26 22:26:23,890 | INFO     | ready for new job
[2026-01-26 17:27:04] 2026-01-26 22:26:23,890 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 17:27:04] 2026-01-26 22:26:23,901 | INFO     | **************************************
[2026-01-26 17:27:04] 2026-01-26 22:26:23,906 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 17:27:04] 2026-01-26 22:26:23,906 | INFO     | **************************************
[2026-01-26 17:27:04] 2026-01-26 22:26:23,906 | INFO     | 
[2026-01-26 17:27:04] 2026-01-26 22:26:23,934 | INFO     | architecture information:
[2026-01-26 17:27:04] 2026-01-26 22:26:23,943 | INFO     | executing command: cat /etc/os-release
[2026-01-26 17:27:04] 2026-01-26 22:26:24,108 | INFO     | cat /etc/os-release:
[2026-01-26 17:27:04] NAME="CentOS Linux"
[2026-01-26 17:27:04] VERSION="7 (Core)"
[2026-01-26 17:27:04] ID="centos"
[2026-01-26 17:27:04] ID_LIKE="rhel fedora"
[2026-01-26 17:27:04] VERSION_ID="7"
[2026-01-26 17:27:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 17:27:04] ANSI_COLOR="0;31"
[2026-01-26 17:27:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 17:27:04] HOME_URL="https://www.centos.org/"
[2026-01-26 17:27:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 17:27:04] 
[2026-01-26 17:27:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 17:27:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 17:27:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 17:27:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 17:27:04] 
[2026-01-26 17:27:04] 2026-01-26 22:26:24,109 | INFO     | **************************************
[2026-01-26 17:27:04] 2026-01-26 22:26:24,617 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-26 17:27:04] 2026-01-26 22:26:24,877 | INFO     | sufficient remaining disk space (91932852224 B)
[2026-01-26 17:27:04] 2026-01-26 22:26:24,878 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 17:27:04] 2026-01-26 22:26:24,878 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 17:27:04] 2026-01-26 22:26:24,879 | INFO     | update_server=False
[2026-01-26 17:27:04] 2026-01-26 22:26:24,879 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 17:27:04] 2026-01-26 22:26:25,116 | INFO     | all payload control threads have been joined
[2026-01-26 17:27:04] 2026-01-26 22:26:25,266 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 17:27:04] 2026-01-26 22:26:25,335 | INFO     | all job control threads have been joined
[2026-01-26 17:27:04] 2026-01-26 22:26:25,668 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 17:27:04] 2026-01-26 22:26:25,669 | INFO     | aborting loop
[2026-01-26 17:27:04] 2026-01-26 22:26:25,848 | INFO     | all data control threads have been joined
[2026-01-26 17:27:04] 2026-01-26 22:26:25,930 | INFO     | [job] retrieve thread has finished
[2026-01-26 17:27:04] 2026-01-26 22:26:25,964 | INFO     | [job] validate thread has finished
[2026-01-26 17:27:04] 2026-01-26 22:26:26,024 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 17:27:04] 2026-01-26 22:26:26,036 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 17:27:04] 2026-01-26 22:26:26,041 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 17:27:04] 2026-01-26 22:26:26,122 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 17:27:04] 2026-01-26 22:26:26,123 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 17:27:04] 2026-01-26 22:26:26,124 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 17:27:04] 2026-01-26 22:26:26,124 | INFO     | [payload] control thread has finished
[2026-01-26 17:27:04] 2026-01-26 22:26:26,148 | INFO     | [data] copytool_in thread has finished
[2026-01-26 17:27:04] 2026-01-26 22:26:26,340 | INFO     | [job] control thread has finished
[2026-01-26 17:27:04] 2026-01-26 22:26:26,675 | INFO     | [job] job monitor thread has finished
[2026-01-26 17:27:04] 2026-01-26 22:26:26,862 | INFO     | [data] control thread has finished
[2026-01-26 17:27:04] 2026-01-26 22:26:27,029 | INFO     | [job] queue monitor thread has finished
[2026-01-26 17:27:04] 2026-01-26 22:26:27,053 | INFO     | [payload] failed_post thread has finished
[2026-01-26 17:27:04] 2026-01-26 22:26:27,273 | INFO     | [data] copytool_out thread has finished
[2026-01-26 17:27:04] 2026-01-26 22:26:27,476 | INFO     | [payload] validate_post thread has finished
[2026-01-26 17:27:04] 2026-01-26 22:26:30,133 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 17:27:04] 2026-01-26 22:26:53,386 | INFO     | [monitor] cgroup control has ended
[2026-01-26 17:27:04] 2026-01-26 22:26:54,423 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140459185911616)>', '<ExcThread(monitor, started 140458827171584)>']
[2026-01-26 17:27:04] 2026-01-26 22:26:59,535 | INFO     | all workflow threads have been joined
[2026-01-26 17:27:04] 2026-01-26 22:26:59,535 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 17:27:04] 2026-01-26 22:26:59,536 | INFO     | traces error code: 0
[2026-01-26 17:27:04] 2026-01-26 22:26:59,536 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 17:27:04] 2026-01-26 22:27:02,297 | INFO     | PID=3705838 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 17:27:04] 2026-01-26 22:27:02,298 | INFO     | .. there are 29 such processes running
[2026-01-26 17:27:04] 2026-01-26 22:27:02,306 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 17:27:04] 2026-01-26 22:27:02,307 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 17:27:04] 2026-01-26 22:27:02,307 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 17:27:04] 2026-01-26 22:27:02,307 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 17:27:04] 2026-01-26 22:27:02,308 | INFO     | [monitor] control thread has ended
[2026-01-26 17:27:04] 2026-01-26 22:27:02,659 [wrapper] ==== pilot stdout END ====
[2026-01-26 17:27:04] 2026-01-26 22:27:02,681 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 17:27:04] 2026-01-26 22:27:02,699 [wrapper] pilotpid: 3705838
[2026-01-26 17:27:04] 2026-01-26 22:27:02,743 [wrapper] Pilot exit status: 0
[2026-01-26 17:27:04] 2026-01-26 22:27:02,861 [wrapper] pandaids: 6983191446 6983191446
[2026-01-26 17:27:04] 2026-01-26 22:27:04,059 [wrapper] cleanup supervisor_pilot 2272899 3705839
[2026-01-26 17:27:04] 2026-01-26 22:27:04,080 [wrapper] Test setup, not cleaning
[2026-01-26 17:27:04] 2026-01-26 22:27:04,100 [wrapper] apfmon messages muted
[2026-01-26 17:27:04] 2026-01-26 22:27:04,196 [wrapper] ==== wrapper stdout END ====
[2026-01-26 17:27:04] 2026-01-26 22:27:04,267 [wrapper] ==== wrapper stderr END ====
[2026-01-26 17:27:04]  *** Error codes and diagnostics ***
[2026-01-26 17:27:04]     "exeErrorCode": 0,
[2026-01-26 17:27:04]     "exeErrorDiag": "",
[2026-01-26 17:27:04]     "pilotErrorCode": 0,
[2026-01-26 17:27:04]     "pilotErrorDiag": "",
[2026-01-26 17:27:04]  *** Listing of results directory ***
[2026-01-26 17:27:04] total 695196
[2026-01-26 17:27:04] drwx------. 5 boincer umatlas      4096 Jan 14 05:00 pilot3
[2026-01-26 17:27:04] -rw-r--r--. 1 boincer umatlas    584422 Jan 25 11:28 pilot3.tar.gz
[2026-01-26 17:27:04] -rwx------. 1 boincer umatlas     36322 Jan 25 11:28 runpilot2-wrapper.sh
[2026-01-26 17:27:04] -rw-r--r--. 1 boincer umatlas      5111 Jan 25 11:28 queuedata.json
[2026-01-26 17:27:04] -rw-r--r--. 1 boincer umatlas       100 Jan 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 17:27:04] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 26 00:04 run_atlas
[2026-01-26 17:27:04] -rw-r--r--. 1 boincer umatlas       105 Jan 26 00:04 job.xml
[2026-01-26 17:27:04] -rw-r--r--. 3 boincer umatlas 252743246 Jan 26 00:04 EVNT.47929406._000102.pool.root.1
[2026-01-26 17:27:04] -rw-r--r--. 3 boincer umatlas 252743246 Jan 26 00:04 ATLAS.root_0
[2026-01-26 17:27:04] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 00:04 start_atlas.sh
[2026-01-26 17:27:04] drwxrwx--x. 2 boincer umatlas      4096 Jan 26 00:04 shared
[2026-01-26 17:27:04] -rw-r--r--. 2 boincer umatlas    597775 Jan 26 00:04 input.tar.gz
[2026-01-26 17:27:04] -rw-r--r--. 1 boincer umatlas         0 Jan 26 00:04 boinc_lockfile
[2026-01-26 17:27:04] -rw-r--r--. 1 boincer umatlas      2575 Jan 26 00:22 pandaJob.out
[2026-01-26 17:27:04] -rw-------. 1 boincer umatlas        57 Jan 26 00:22 setup.sh.local
[2026-01-26 17:27:04] -rw-------. 1 boincer umatlas   1004254 Jan 26 00:22 agis_schedconf.cvmfs.json
[2026-01-26 17:27:04] -rw-------. 1 boincer umatlas       436 Jan 26 00:22 workernode_map.json
[2026-01-26 17:27:04] -rw-r--r--. 1 boincer umatlas      6858 Jan 26 17:21 init_data.xml
[2026-01-26 17:27:04] -rw-------. 1 boincer umatlas 190200392 Jan 26 17:21 HITS.47929408._002633.pool.root.1
[2026-01-26 17:27:04] -rw-r--r--. 1 boincer umatlas       531 Jan 26 17:22 boinc_task_state.xml
[2026-01-26 17:27:04] -rw-------. 1 boincer umatlas      1051 Jan 26 17:25 memory_monitor_summary.json
[2026-01-26 17:27:04] -rw-------. 1 boincer umatlas   1516246 Jan 26 17:26 agis_ddmendpoints.agis.ALL.json
[2026-01-26 17:27:04] -rw-------. 1 boincer umatlas        95 Jan 26 17:26 pilot_heartbeat.json
[2026-01-26 17:27:04] -rw-------. 1 boincer umatlas    929009 Jan 26 17:26 log.47929408._002633.job.log.tgz.1
[2026-01-26 17:27:04] -rw-------. 1 boincer umatlas      6415 Jan 26 17:26 heartbeat.json
[2026-01-26 17:27:04] -rw-------. 1 boincer umatlas       823 Jan 26 17:27 pilotlog.txt
[2026-01-26 17:27:04] -rw-r--r--. 1 boincer umatlas      8192 Jan 26 17:27 boinc_mmap_file
[2026-01-26 17:27:04] -rw-r--r--. 1 boincer umatlas        28 Jan 26 17:27 wrapper_checkpoint.txt
[2026-01-26 17:27:04] -rw-------. 1 boincer umatlas   5195114 Jan 26 17:27 log.47929408._002633.job.log.1
[2026-01-26 17:27:04] -rw-------. 1 boincer umatlas       357 Jan 26 17:27 output.list
[2026-01-26 17:27:04] -rw-r--r--. 1 boincer umatlas       620 Jan 26 17:27 runtime_log
[2026-01-26 17:27:04] -rw-------. 1 boincer umatlas   6144000 Jan 26 17:27 result.tar.gz
[2026-01-26 17:27:04] -rw-r--r--. 1 boincer umatlas      9439 Jan 26 17:27 runtime_log.err
[2026-01-26 17:27:04] -rw-------. 1 boincer umatlas       790 Jan 26 17:27 PLCNDmj9H48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAE1KDmLlhG9m.diag
[2026-01-26 17:27:04] -rw-r--r--. 1 boincer umatlas     23445 Jan 26 17:27 stderr.txt
[2026-01-26 17:27:05] HITS file was successfully produced:
[2026-01-26 17:27:05] -rw-------. 1 boincer umatlas 190200392 Jan 26 17:21 shared/HITS.pool.root.1
[2026-01-26 17:27:05]  *** Contents of shared directory: ***
[2026-01-26 17:27:05] total 439172
[2026-01-26 17:27:05] -rw-r--r--. 3 boincer umatlas 252743246 Jan 26 00:04 ATLAS.root_0
[2026-01-26 17:27:05] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 00:04 start_atlas.sh
[2026-01-26 17:27:05] -rw-r--r--. 2 boincer umatlas    597775 Jan 26 00:04 input.tar.gz
[2026-01-26 17:27:05] -rw-------. 1 boincer umatlas 190200392 Jan 26 17:21 HITS.pool.root.1
[2026-01-26 17:27:05] -rw-------. 1 boincer umatlas   6144000 Jan 26 17:27 result.tar.gz
17:27:07 (3682753): run_atlas exited; CPU time 116742.377786
17:27:07 (3682753): called boinc_finish(0)

</stderr_txt>
]]>

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