Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:49:07 (1135371): wrapper (7.7.26015): starting
18:49:07 (1135371): wrapper: running run_atlas (--nthreads 8)
[2026-01-25 18:49:07] Arguments: --nthreads 8
[2026-01-25 18:49:07] Threads: 8
[2026-01-25 18:49:07] Checking for CVMFS
[2026-01-25 18:49:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-25 18:49:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-25 18:49:08] Running cvmfs_config stat atlas.cern.ch
[2026-01-25 18:49:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-25 18:49:28] 2.13.3.0 6248 37704 217140 155525 1 58 22509672 40960000 13775 16776704 0 53247743 99.729 40600931 38184 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-25 18:49:28] CVMFS is ok
[2026-01-25 18:49:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-25 18:49:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-25 18:49:28] Further information can be found at the LHC@home message board.
[2026-01-25 18:49:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-25 18:49:28] Checking for apptainer binary...
[2026-01-25 18:49:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-25 18:49:28] Running /usr/bin/apptainer --version
[2026-01-25 18:49:29] apptainer version 1.4.5-2.el9
[2026-01-25 18:49:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-25 18:49:29] c-211-35-1.aglt2.org
[2026-01-25 18:49:29] apptainer works
[2026-01-25 18:49:29] Set ATHENA_PROC_NUMBER=8
[2026-01-25 18:49:29] Set ATHENA_CORE_NUMBER=8
[2026-01-25 18:49:30] Starting ATLAS job with PandaID=6982709034
[2026-01-25 18:49:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:20:09 (1135371): BOINC client no longer exists - exiting
20:20:09 (1135371): timer handler: client dead, exiting
20:27:26 (1308489): wrapper (7.7.26015): starting
20:27:26 (1308489): wrapper: running run_atlas (--nthreads 8)
[2026-01-25 20:27:26] Arguments: --nthreads 8
[2026-01-25 20:27:26] Threads: 8
[2026-01-25 20:27:26] This job has been restarted, cleaning up previous attempt
[2026-01-25 20:27:26] Checking for CVMFS
[2026-01-25 20:27:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-25 20:27:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-25 20:27:26] Running cvmfs_config stat atlas.cern.ch
[2026-01-25 20:27:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-25 20:27:26] 2.13.3.0 6248 37802 223132 155527 3 282 23275386 40960000 11748 16776704 0 53352691 99.728 40853015 38064 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-25 20:27:26] CVMFS is ok
[2026-01-25 20:27:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-25 20:27:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-25 20:27:26] Further information can be found at the LHC@home message board.
[2026-01-25 20:27:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-25 20:27:26] Checking for apptainer binary...
[2026-01-25 20:27:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-25 20:27:26] Running /usr/bin/apptainer --version
[2026-01-25 20:27:26] apptainer version 1.4.5-2.el9
[2026-01-25 20:27:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-25 20:27:27] c-211-35-1.aglt2.org
[2026-01-25 20:27:27] apptainer works
[2026-01-25 20:27:27] Set ATHENA_PROC_NUMBER=8
[2026-01-25 20:27:27] Set ATHENA_CORE_NUMBER=8
[2026-01-25 20:27:27] Starting ATLAS job with PandaID=6982709034
[2026-01-25 20:27:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 02:41:23]  *** The last 200 lines of the pilot log: ***
[2026-01-26 02:41:23] 2026-01-26 07:40:17,805 | INFO     | total number of processed events: 400 (read)
[2026-01-26 02:41:23] 2026-01-26 07:40:17,886 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6982709034/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 02:41:23] 2026-01-26 07:40:17,886 | INFO     | extracted standard info from prmon json
[2026-01-26 02:41:23] 2026-01-26 07:40:17,886 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 02:41:23] 2026-01-26 07:40:17,886 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 02:41:23] 2026-01-26 07:40:17,911 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 02:41:23] 2026-01-26 07:40:17,912 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 02:41:23] 2026-01-26 07:40:17,923 | INFO     | fitting pss+swap vs Time
[2026-01-26 02:41:23] 2026-01-26 07:40:17,924 | INFO     | sum of square deviations: 15202187193.82516
[2026-01-26 02:41:23] 2026-01-26 07:40:17,927 | INFO     | sum of deviations: 64694973320.54082
[2026-01-26 02:41:23] 2026-01-26 07:40:17,927 | INFO     | mean x: 1769402015.6448088
[2026-01-26 02:41:23] 2026-01-26 07:40:17,927 | INFO     | mean y: 2507313.4426229508
[2026-01-26 02:41:23] 2026-01-26 07:40:17,927 | INFO     | intersect: -7527423395.603518
[2026-01-26 02:41:23] 2026-01-26 07:40:17,928 | INFO     | chi2: 1.5528713111370542
[2026-01-26 02:41:23] 2026-01-26 07:40:17,928 | INFO     | sum of square deviations: 14587615091.21877
[2026-01-26 02:41:23] 2026-01-26 07:40:17,931 | INFO     | sum of deviations: 63679848583.81163
[2026-01-26 02:41:23] 2026-01-26 07:40:17,931 | INFO     | mean x: 1769401863.1468143
[2026-01-26 02:41:23] 2026-01-26 07:40:17,931 | INFO     | mean y: 2507061.5318559557
[2026-01-26 02:41:23] 2026-01-26 07:40:17,932 | INFO     | intersect: -7721527472.182284
[2026-01-26 02:41:23] 2026-01-26 07:40:17,932 | INFO     | chi2: 1.5531396409879499
[2026-01-26 02:41:23] 2026-01-26 07:40:17,932 | INFO     | current chi2=1.5531396409879499 (change=-0.017279593548493403 %)
[2026-01-26 02:41:23] 2026-01-26 07:40:17,932 | INFO     | right removable region: 360
[2026-01-26 02:41:23] 2026-01-26 07:40:17,933 | INFO     | sum of square deviations: 14587582761.21877
[2026-01-26 02:41:23] 2026-01-26 07:40:17,936 | INFO     | sum of deviations: 2290402686.7368417
[2026-01-26 02:41:23] 2026-01-26 07:40:17,936 | INFO     | mean x: 1769402168.1468143
[2026-01-26 02:41:23] 2026-01-26 07:40:17,936 | INFO     | mean y: 2522724.6842105263
[2026-01-26 02:41:23] 2026-01-26 07:40:17,936 | INFO     | intersect: -275291876.00586736
[2026-01-26 02:41:23] 2026-01-26 07:40:17,936 | INFO     | chi2: 0.07646676939423798
[2026-01-26 02:41:23] 2026-01-26 07:40:17,937 | INFO     | current chi2=0.07646676939423798 (change=95.07578195013166 %)
[2026-01-26 02:41:23] 2026-01-26 07:40:17,937 | INFO     | sum of square deviations: 13989791605.404472
[2026-01-26 02:41:23] 2026-01-26 07:40:17,940 | INFO     | sum of deviations: -10231376968.23034
[2026-01-26 02:41:23] 2026-01-26 07:40:17,940 | INFO     | mean x: 1769402320.6460674
[2026-01-26 02:41:23] 2026-01-26 07:40:17,940 | INFO     | mean y: 2525909.5140449437
[2026-01-26 02:41:23] 2026-01-26 07:40:17,940 | INFO     | intersect: 1296571071.9879346
[2026-01-26 02:41:23] 2026-01-26 07:40:17,941 | INFO     | chi2: 0.024108377944961738
[2026-01-26 02:41:23] 2026-01-26 07:40:17,941 | INFO     | current chi2=0.024108377944961738 (change=68.47208514764536 %)
[2026-01-26 02:41:23] 2026-01-26 07:40:17,941 | INFO     | sum of square deviations: 13408602086.15952
[2026-01-26 02:41:23] 2026-01-26 07:40:17,944 | INFO     | sum of deviations: -9583617512.245022
[2026-01-26 02:41:23] 2026-01-26 07:40:17,944 | INFO     | mean x: 1769402473.1396012
[2026-01-26 02:41:23] 2026-01-26 07:40:17,944 | INFO     | mean y: 2525738.5356125357
[2026-01-26 02:41:23] 2026-01-26 07:40:17,944 | INFO     | intersect: 1267182293.9936786
[2026-01-26 02:41:23] 2026-01-26 07:40:17,945 | INFO     | chi2: 0.024034127067998876
[2026-01-26 02:41:23] 2026-01-26 07:40:17,945 | INFO     | current chi2=0.024034127067998876 (change=0.3079878585459898 %)
[2026-01-26 02:41:23] 2026-01-26 07:40:17,945 | INFO     | left removable region: 30
[2026-01-26 02:41:23] 2026-01-26 07:40:17,945 | INFO     | sum of square deviations: 11143132989.651503
[2026-01-26 02:41:23] 2026-01-26 07:40:17,948 | INFO     | sum of deviations: -1921615597.6969614
[2026-01-26 02:41:23] 2026-01-26 07:40:17,948 | INFO     | mean x: 1769402747.621212
[2026-01-26 02:41:23] 2026-01-26 07:40:17,948 | INFO     | mean y: 2523529.4424242424
[2026-01-26 02:41:23] 2026-01-26 07:40:17,948 | INFO     | intersect: 307654224.8756049
[2026-01-26 02:41:23] 2026-01-26 07:40:17,949 | INFO     | chi2: 0.019120471491336832
[2026-01-26 02:41:23] 2026-01-26 07:40:17,949 | INFO     | current memory leak: -0.17 B/s (using 330 data points, chi2=0.02)
[2026-01-26 02:41:23] 2026-01-26 07:40:17,949 | INFO     | could have reported an average CPU frequency of 2686 MHz (16 samples)
[2026-01-26 02:41:23] 2026-01-26 07:40:17,949 | INFO     | ..............................
[2026-01-26 02:41:23] 2026-01-26 07:40:17,950 | INFO     | . Timing measurements:
[2026-01-26 02:41:23] 2026-01-26 07:40:17,950 | INFO     | . get job = 0 s
[2026-01-26 02:41:23] 2026-01-26 07:40:17,950 | INFO     | . initial setup = 1 s
[2026-01-26 02:41:23] 2026-01-26 07:40:17,950 | INFO     | . payload setup = 6 s
[2026-01-26 02:41:23] 2026-01-26 07:40:17,950 | INFO     | . stage-in = 0 s
[2026-01-26 02:41:23] 2026-01-26 07:40:17,950 | INFO     | . payload execution = 22332 s
[2026-01-26 02:41:23] 2026-01-26 07:40:17,950 | INFO     | . stage-out = 2 s
[2026-01-26 02:41:23] 2026-01-26 07:40:17,950 | INFO     | . log creation = 0 s
[2026-01-26 02:41:23] 2026-01-26 07:40:17,950 | INFO     | ..............................
[2026-01-26 02:41:23] 2026-01-26 07:40:18,278 | INFO     | 
[2026-01-26 02:41:23] 2026-01-26 07:40:18,279 | INFO     | job summary report
[2026-01-26 02:41:23] 2026-01-26 07:40:18,279 | INFO     | --------------------------------------------------
[2026-01-26 02:41:23] 2026-01-26 07:40:18,279 | INFO     | PanDA job id: 6982709034
[2026-01-26 02:41:23] 2026-01-26 07:40:18,279 | INFO     | task id: 48310724
[2026-01-26 02:41:23] 2026-01-26 07:40:18,279 | INFO     | errors: (none)
[2026-01-26 02:41:23] 2026-01-26 07:40:18,279 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 02:41:23] 2026-01-26 07:40:18,279 | INFO     | pilot state: finished 
[2026-01-26 02:41:23] 2026-01-26 07:40:18,279 | INFO     | transexitcode: 0
[2026-01-26 02:41:23] 2026-01-26 07:40:18,279 | INFO     | exeerrorcode: 0
[2026-01-26 02:41:23] 2026-01-26 07:40:18,279 | INFO     | exeerrordiag: 
[2026-01-26 02:41:23] 2026-01-26 07:40:18,280 | INFO     | exitcode: 0
[2026-01-26 02:41:23] 2026-01-26 07:40:18,280 | INFO     | exitmsg: OK
[2026-01-26 02:41:23] 2026-01-26 07:40:18,280 | INFO     | cpuconsumptiontime: 38773 s
[2026-01-26 02:41:23] 2026-01-26 07:40:18,280 | INFO     | nevents: 400
[2026-01-26 02:41:23] 2026-01-26 07:40:18,280 | INFO     | neventsw: 0
[2026-01-26 02:41:23] 2026-01-26 07:40:18,280 | INFO     | pid: 1332515
[2026-01-26 02:41:23] 2026-01-26 07:40:18,280 | INFO     | pgrp: 1332515
[2026-01-26 02:41:23] 2026-01-26 07:40:18,280 | INFO     | corecount: 8
[2026-01-26 02:41:23] 2026-01-26 07:40:18,280 | INFO     | event service: False
[2026-01-26 02:41:23] 2026-01-26 07:40:18,280 | INFO     | sizes: {0: 2284047, 1: 2284253, 11: 2284281, 22343: 2318746, 22346: 2327744, 22348: 2327800, 22349: 2328122}
[2026-01-26 02:41:23] 2026-01-26 07:40:18,280 | INFO     | --------------------------------------------------
[2026-01-26 02:41:23] 2026-01-26 07:40:18,280 | INFO     | 
[2026-01-26 02:41:23] 2026-01-26 07:40:18,280 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-26 02:41:23] 2026-01-26 07:40:18,353 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 02:41:23] 2026-01-26 07:40:18,353 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 02:41:23] 2026-01-26 07:40:18,353 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 02:41:23] 2026-01-26 07:40:18,353 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 02:41:23] 2026-01-26 07:40:18,354 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 02:41:23] 2026-01-26 07:40:18,354 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 02:41:23] 2026-01-26 07:40:18,354 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 02:41:23] 2026-01-26 07:40:18,354 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 02:41:23] 2026-01-26 07:40:18,354 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 02:41:23] 2026-01-26 07:40:18,354 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 02:41:23] 2026-01-26 07:40:18,354 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 02:41:23] 2026-01-26 07:40:18,354 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 02:41:23] 2026-01-26 07:40:18,354 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 02:41:23] 2026-01-26 07:40:18,354 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 02:41:23] 2026-01-26 07:40:18,354 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 02:41:23] 2026-01-26 07:40:18,354 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 02:41:23] 2026-01-26 07:40:18,354 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 02:41:23] 2026-01-26 07:40:18,355 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 02:41:23] 2026-01-26 07:40:18,355 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 02:41:23] 2026-01-26 07:40:18,355 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 02:41:23] 2026-01-26 07:40:18,355 | INFO     | job 6982709034 has completed (purged errors)
[2026-01-26 02:41:23] 2026-01-26 07:40:18,355 | INFO     | overall cleanup function is called
[2026-01-26 02:41:23] 2026-01-26 07:40:18,503 | INFO     | number of running child processes to parent process 1332515: 1
[2026-01-26 02:41:23] 2026-01-26 07:40:18,503 | INFO     | maximum number of monitored processes: 6
[2026-01-26 02:41:23] 2026-01-26 07:40:18,503 | INFO     | aborting job monitoring since job object (job id=6982709034) has expired
[2026-01-26 02:41:23] 2026-01-26 07:40:19,371 | INFO     | --- collectZombieJob: --- 10, [1332515]
[2026-01-26 02:41:23] 2026-01-26 07:40:19,371 | INFO     | zombie collector waiting for pid 1332515
[2026-01-26 02:41:23] 2026-01-26 07:40:19,371 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 02:41:23] 2026-01-26 07:40:19,371 | INFO     | collected zombie processes
[2026-01-26 02:41:23] 2026-01-26 07:40:19,371 | INFO     | will attempt to kill all subprocesses of pid=1332515
[2026-01-26 02:41:23] 2026-01-26 07:40:20,132 | INFO     | process IDs to be killed: [1332515] (in reverse order)
[2026-01-26 02:41:23] 2026-01-26 07:40:20,472 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 02:41:23] 2026-01-26 07:40:20,472 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 02:41:23] 2026-01-26 07:40:20,505 | INFO     | did not find any defunct processes belonging to 1332515
[2026-01-26 02:41:23] 2026-01-26 07:40:20,545 | INFO     | did not find any defunct processes belonging to 1332515
[2026-01-26 02:41:23] 2026-01-26 07:40:20,546 | INFO     | ready for new job
[2026-01-26 02:41:23] 2026-01-26 07:40:20,546 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 02:41:23] 2026-01-26 07:40:20,549 | INFO     | **************************************
[2026-01-26 02:41:23] 2026-01-26 07:40:20,553 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 02:41:23] 2026-01-26 07:40:20,553 | INFO     | **************************************
[2026-01-26 02:41:23] 2026-01-26 07:40:20,553 | INFO     | 
[2026-01-26 02:41:23] 2026-01-26 07:40:20,563 | INFO     | architecture information:
[2026-01-26 02:41:23] 2026-01-26 07:40:20,564 | INFO     | executing command: cat /etc/os-release
[2026-01-26 02:41:23] 2026-01-26 07:40:20,629 | INFO     | cat /etc/os-release:
[2026-01-26 02:41:23] NAME="CentOS Linux"
[2026-01-26 02:41:23] VERSION="7 (Core)"
[2026-01-26 02:41:23] ID="centos"
[2026-01-26 02:41:23] ID_LIKE="rhel fedora"
[2026-01-26 02:41:23] VERSION_ID="7"
[2026-01-26 02:41:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 02:41:23] ANSI_COLOR="0;31"
[2026-01-26 02:41:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 02:41:23] HOME_URL="https://www.centos.org/"
[2026-01-26 02:41:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 02:41:23] 
[2026-01-26 02:41:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 02:41:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 02:41:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 02:41:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 02:41:23] 
[2026-01-26 02:41:23] 2026-01-26 07:40:20,630 | INFO     | **************************************
[2026-01-26 02:41:23] 2026-01-26 07:40:21,133 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-26 02:41:23] 2026-01-26 07:40:21,262 | INFO     | sufficient remaining disk space (121862356992 B)
[2026-01-26 02:41:23] 2026-01-26 07:40:21,263 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 02:41:23] 2026-01-26 07:40:21,263 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 02:41:23] 2026-01-26 07:40:21,263 | INFO     | update_server=False
[2026-01-26 02:41:23] 2026-01-26 07:40:21,263 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 02:41:23] 2026-01-26 07:40:21,264 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 02:41:23] 2026-01-26 07:40:21,961 | INFO     | all data control threads have been joined
[2026-01-26 02:41:23] 2026-01-26 07:40:22,077 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 02:41:23] 2026-01-26 07:40:22,077 | INFO     | aborting loop
[2026-01-26 02:41:23] 2026-01-26 07:40:22,200 | INFO     | all payload control threads have been joined
[2026-01-26 02:41:23] 2026-01-26 07:40:22,269 | INFO     | [job] retrieve thread has finished
[2026-01-26 02:41:23] 2026-01-26 07:40:22,281 | INFO     | [job] validate thread has finished
[2026-01-26 02:41:23] 2026-01-26 07:40:22,295 | INFO     | all job control threads have been joined
[2026-01-26 02:41:23] 2026-01-26 07:40:22,411 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 02:41:23] 2026-01-26 07:40:22,548 | INFO     | [data] copytool_in thread has finished
[2026-01-26 02:41:23] 2026-01-26 07:40:22,592 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 02:41:23] 2026-01-26 07:40:22,653 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 02:41:23] 2026-01-26 07:40:22,908 | INFO     | [payload] validate_post thread has finished
[2026-01-26 02:41:23] 2026-01-26 07:40:22,967 | INFO     | [data] control thread has finished
[2026-01-26 02:41:23] 2026-01-26 07:40:23,083 | INFO     | [job] job monitor thread has finished
[2026-01-26 02:41:23] 2026-01-26 07:40:23,132 | INFO     | [payload] failed_post thread has finished
[2026-01-26 02:41:23] 2026-01-26 07:40:23,206 | INFO     | [payload] control thread has finished
[2026-01-26 02:41:23] 2026-01-26 07:40:23,287 | INFO     | [data] copytool_out thread has finished
[2026-01-26 02:41:23] 2026-01-26 07:40:23,293 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 02:41:23] 2026-01-26 07:40:23,301 | INFO     | [job] control thread has finished
[2026-01-26 02:41:23] 2026-01-26 07:40:23,721 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 02:41:23] 2026-01-26 07:40:23,788 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 02:41:23] 2026-01-26 07:40:24,300 | INFO     | [job] queue monitor thread has finished
[2026-01-26 02:41:23] 2026-01-26 07:40:27,797 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 02:41:23] 2026-01-26 07:40:50,741 | INFO     | PID=1323138 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 02:41:23] 2026-01-26 07:40:50,741 | INFO     | .. there are 21 such processes running
[2026-01-26 02:41:23] 2026-01-26 07:40:50,741 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 02:41:23] 2026-01-26 07:40:50,741 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 02:41:23] 2026-01-26 07:40:50,741 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 02:41:23] 2026-01-26 07:41:17,199 | INFO     | [monitor] cgroup control has ended
[2026-01-26 02:41:23] 2026-01-26 07:41:17,455 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140590518024000)>', '<ExcThread(monitor, started 140590159218432)>']
[2026-01-26 02:41:23] 2026-01-26 07:41:17,926 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 02:41:23] 2026-01-26 07:41:17,926 | INFO     | [monitor] control thread has ended
[2026-01-26 02:41:23] 2026-01-26 07:41:22,498 | INFO     | all workflow threads have been joined
[2026-01-26 02:41:23] 2026-01-26 07:41:22,498 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 02:41:23] 2026-01-26 07:41:22,498 | INFO     | traces error code: 0
[2026-01-26 02:41:23] 2026-01-26 07:41:22,499 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 02:41:23] 2026-01-26 07:41:22,771 [wrapper] ==== pilot stdout END ====
[2026-01-26 02:41:23] 2026-01-26 07:41:22,786 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 02:41:23] 2026-01-26 07:41:22,800 [wrapper] pilotpid: 1323138
[2026-01-26 02:41:23] 2026-01-26 07:41:22,815 [wrapper] Pilot exit status: 0
[2026-01-26 02:41:23] 2026-01-26 07:41:22,958 [wrapper] pandaids: 6982709034 6982709034
[2026-01-26 02:41:23] 2026-01-26 07:41:23,111 [wrapper] cleanup supervisor_pilot 2104383 1323139
[2026-01-26 02:41:23] 2026-01-26 07:41:23,125 [wrapper] Test setup, not cleaning
[2026-01-26 02:41:23] 2026-01-26 07:41:23,139 [wrapper] apfmon messages muted
[2026-01-26 02:41:23] 2026-01-26 07:41:23,147 [wrapper] ==== wrapper stdout END ====
[2026-01-26 02:41:23] 2026-01-26 07:41:23,149 [wrapper] ==== wrapper stderr END ====
[2026-01-26 02:41:23]  *** Error codes and diagnostics ***
[2026-01-26 02:41:23]     "exeErrorCode": 0,
[2026-01-26 02:41:23]     "exeErrorDiag": "",
[2026-01-26 02:41:23]     "pilotErrorCode": 0,
[2026-01-26 02:41:23]     "pilotErrorDiag": "",
[2026-01-26 02:41:23]  *** Listing of results directory ***
[2026-01-26 02:41:23] total 1160524
[2026-01-26 02:41:23] drwx------. 5 boincer umatlas      4096 Jan 14 05:00 pilot3
[2026-01-26 02:41:23] -rw-r--r--. 1 boincer umatlas    584422 Jan 25 01:30 pilot3.tar.gz
[2026-01-26 02:41:23] -rw-r--r--. 1 boincer umatlas      5111 Jan 25 01:30 queuedata.json
[2026-01-26 02:41:23] -rwx------. 1 boincer umatlas     36322 Jan 25 01:30 runpilot2-wrapper.sh
[2026-01-26 02:41:23] -rw-r--r--. 1 boincer umatlas       100 Jan 25 18:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 02:41:23] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 25 18:49 run_atlas
[2026-01-26 02:41:23] -rw-r--r--. 1 boincer umatlas       105 Jan 25 18:49 job.xml
[2026-01-26 02:41:23] -rw-r--r--. 3 boincer umatlas 498425897 Jan 25 18:49 EVNT.48310721._000111.pool.root.1
[2026-01-26 02:41:23] -rw-r--r--. 3 boincer umatlas 498425897 Jan 25 18:49 ATLAS.root_0
[2026-01-26 02:41:23] -rw-r--r--. 2 boincer umatlas     15845 Jan 25 18:49 start_atlas.sh
[2026-01-26 02:41:23] drwxrwx--x. 2 boincer umatlas      4096 Jan 25 18:49 shared
[2026-01-26 02:41:23] -rw-r--r--. 2 boincer umatlas    597756 Jan 25 18:49 input.tar.gz
[2026-01-26 02:41:23] -rw-r--r--. 1 boincer umatlas         0 Jan 25 18:49 boinc_lockfile
[2026-01-26 02:41:23] -rw-r--r--. 1 boincer umatlas      2534 Jan 25 20:27 pandaJob.out
[2026-01-26 02:41:23] -rw-------. 1 boincer umatlas        57 Jan 25 20:27 setup.sh.local
[2026-01-26 02:41:23] -rw-------. 1 boincer umatlas   1004246 Jan 25 20:27 agis_schedconf.cvmfs.json
[2026-01-26 02:41:23] -rw-------. 1 boincer umatlas       443 Jan 25 20:27 workernode_map.json
[2026-01-26 02:41:23] -rw-------. 1 boincer umatlas 180644726 Jan 26 02:39 HITS.48310724._005537.pool.root.1
[2026-01-26 02:41:23] -rw-r--r--. 1 boincer umatlas       532 Jan 26 02:39 boinc_task_state.xml
[2026-01-26 02:41:23] -rw-------. 1 boincer umatlas      1053 Jan 26 02:40 memory_monitor_summary.json
[2026-01-26 02:41:23] -rw-------. 1 boincer umatlas   1516246 Jan 26 02:40 agis_ddmendpoints.agis.ALL.json
[2026-01-26 02:41:23] -rw-------. 1 boincer umatlas    590407 Jan 26 02:40 log.48310724._005537.job.log.tgz.1
[2026-01-26 02:41:23] -rw-------. 1 boincer umatlas        96 Jan 26 02:40 pilot_heartbeat.json
[2026-01-26 02:41:23] -rw-------. 1 boincer umatlas      6413 Jan 26 02:40 heartbeat.json
[2026-01-26 02:41:23] -rw-r--r--. 1 boincer umatlas      6860 Jan 26 02:40 init_data.xml
[2026-01-26 02:41:23] -rw-r--r--. 1 boincer umatlas        28 Jan 26 02:40 wrapper_checkpoint.txt
[2026-01-26 02:41:23] -rw-------. 1 boincer umatlas      4821 Jan 26 02:41 pilotlog.txt
[2026-01-26 02:41:23] -rw-r--r--. 1 boincer umatlas      8192 Jan 26 02:41 boinc_mmap_file
[2026-01-26 02:41:23] -rw-------. 1 boincer umatlas   2869980 Jan 26 02:41 log.48310724._005537.job.log.1
[2026-01-26 02:41:23] -rw-------. 1 boincer umatlas       357 Jan 26 02:41 output.list
[2026-01-26 02:41:23] -rw-r--r--. 1 boincer umatlas       620 Jan 26 02:41 runtime_log
[2026-01-26 02:41:23] -rw-------. 1 boincer umatlas   3481600 Jan 26 02:41 result.tar.gz
[2026-01-26 02:41:23] -rw-r--r--. 1 boincer umatlas      9437 Jan 26 02:41 runtime_log.err
[2026-01-26 02:41:23] -rw-------. 1 boincer umatlas       787 Jan 26 02:41 rhGKDm9o838n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1O0KDmF5TQJo.diag
[2026-01-26 02:41:23] -rw-r--r--. 1 boincer umatlas     23454 Jan 26 02:41 stderr.txt
[2026-01-26 02:41:23] HITS file was successfully produced:
[2026-01-26 02:41:23] -rw-------. 1 boincer umatlas 180644726 Jan 26 02:39 shared/HITS.pool.root.1
[2026-01-26 02:41:23]  *** Contents of shared directory: ***
[2026-01-26 02:41:23] total 667168
[2026-01-26 02:41:23] -rw-r--r--. 3 boincer umatlas 498425897 Jan 25 18:49 ATLAS.root_0
[2026-01-26 02:41:23] -rw-r--r--. 2 boincer umatlas     15845 Jan 25 18:49 start_atlas.sh
[2026-01-26 02:41:23] -rw-r--r--. 2 boincer umatlas    597756 Jan 25 18:49 input.tar.gz
[2026-01-26 02:41:23] -rw-------. 1 boincer umatlas 180644726 Jan 26 02:39 HITS.pool.root.1
[2026-01-26 02:41:23] -rw-------. 1 boincer umatlas   3481600 Jan 26 02:41 result.tar.gz
02:41:44 (1308489): run_atlas exited; CPU time 39721.160167
02:41:44 (1308489): called boinc_finish(0)

</stderr_txt>
]]>

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