Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
12:52:44 (471713): wrapper (7.7.26015): starting
12:52:44 (471713): wrapper: running run_atlas (--nthreads 12)
[2026-01-26 12:52:44] Arguments: --nthreads 12
[2026-01-26 12:52:44] Threads: 12
[2026-01-26 12:52:44] Checking for CVMFS
[2026-01-26 12:52:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 12:52:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 12:52:46] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 12:52:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 12:52:46] 2.13.3.0 177304 910 47568 155547 3 50 2914038 4096001 1824 130560 0 885684 99.986 39850 1024 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-26 12:52:46] CVMFS is ok
[2026-01-26 12:52:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 12:52:46] Checking for apptainer binary...
[2026-01-26 12:52:46] apptainer is not installed, using version from CVMFS
[2026-01-26 12:52:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 12:52:47] ryzen4700s
[2026-01-26 12:52:47] apptainer works
[2026-01-26 12:52:47] Set ATHENA_PROC_NUMBER=12
[2026-01-26 12:52:47] Set ATHENA_CORE_NUMBER=12
[2026-01-26 12:52:47] Starting ATLAS job with PandaID=6982977394
[2026-01-26 12:52:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 15:28:42]  *** The last 200 lines of the pilot log: ***
[2026-01-26 15:28:42] 2026-01-26 15:28:03,223 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 15:28:42] 2026-01-26 15:28:03,223 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 15:28:42] 2026-01-26 15:28:03,225 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 15:28:42] 2026-01-26 15:28:03,225 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 15:28:42] 2026-01-26 15:28:03,235 | INFO     | fitting pss+swap vs Time
[2026-01-26 15:28:42] 2026-01-26 15:28:03,235 | INFO     | sum of square deviations: 1088905998.0
[2026-01-26 15:28:42] 2026-01-26 15:28:03,236 | INFO     | sum of deviations: 8167827501.499996
[2026-01-26 15:28:42] 2026-01-26 15:28:03,236 | INFO     | mean x: 1769436641.5
[2026-01-26 15:28:42] 2026-01-26 15:28:03,236 | INFO     | mean y: 2644574.7960526315
[2026-01-26 15:28:42] 2026-01-26 15:28:03,236 | INFO     | intersect: -13269808042.005024
[2026-01-26 15:28:42] 2026-01-26 15:28:03,236 | INFO     | chi2: 2.505449811166665
[2026-01-26 15:28:42] 2026-01-26 15:28:03,237 | INFO     | sum of square deviations: 984941258.0
[2026-01-26 15:28:42] 2026-01-26 15:28:03,239 | INFO     | sum of deviations: 19170918716.0
[2026-01-26 15:28:42] 2026-01-26 15:28:03,239 | INFO     | mean x: 1769436489.0
[2026-01-26 15:28:42] 2026-01-26 15:28:03,239 | INFO     | mean y: 2660265.8775510206
[2026-01-26 15:28:42] 2026-01-26 15:28:03,239 | INFO     | intersect: -34437691205.05599
[2026-01-26 15:28:42] 2026-01-26 15:28:03,239 | INFO     | chi2: 1.6310381648315042
[2026-01-26 15:28:42] 2026-01-26 15:28:03,239 | INFO     | current chi2=1.6310381648315042 (change=34.90038564883446 %)
[2026-01-26 15:28:42] 2026-01-26 15:28:03,242 | INFO     | sum of square deviations: 887813855.5
[2026-01-26 15:28:42] 2026-01-26 15:28:03,243 | INFO     | sum of deviations: 18477821313.499996
[2026-01-26 15:28:42] 2026-01-26 15:28:03,243 | INFO     | mean x: 1769436336.5
[2026-01-26 15:28:42] 2026-01-26 15:28:03,243 | INFO     | mean y: 2659177.204225352
[2026-01-26 15:28:42] 2026-01-26 15:28:03,243 | INFO     | intersect: -36824124105.02745
[2026-01-26 15:28:42] 2026-01-26 15:28:03,243 | INFO     | chi2: 1.6331586155779079
[2026-01-26 15:28:42] 2026-01-26 15:28:03,243 | INFO     | current chi2=1.6331586155779079 (change=-0.13000620047555492 %)
[2026-01-26 15:28:42] 2026-01-26 15:28:03,243 | INFO     | right removable region: 141
[2026-01-26 15:28:42] 2026-01-26 15:28:03,246 | INFO     | sum of square deviations: 984941258.0
[2026-01-26 15:28:42] 2026-01-26 15:28:03,246 | INFO     | sum of deviations: -17336913212.0
[2026-01-26 15:28:42] 2026-01-26 15:28:03,247 | INFO     | mean x: 1769436794.0
[2026-01-26 15:28:42] 2026-01-26 15:28:03,247 | INFO     | mean y: 2681465.904761905
[2026-01-26 15:28:42] 2026-01-26 15:28:03,247 | INFO     | intersect: 31148266933.599243
[2026-01-26 15:28:42] 2026-01-26 15:28:03,247 | INFO     | chi2: 1.011717654438439
[2026-01-26 15:28:42] 2026-01-26 15:28:03,247 | INFO     | current chi2=1.011717654438439 (change=59.61932065335079 %)
[2026-01-26 15:28:42] 2026-01-26 15:28:03,247 | INFO     | sum of square deviations: 887813855.5
[2026-01-26 15:28:42] 2026-01-26 15:28:03,248 | INFO     | sum of deviations: -20333365917.5
[2026-01-26 15:28:42] 2026-01-26 15:28:03,248 | INFO     | mean x: 1769436946.5
[2026-01-26 15:28:42] 2026-01-26 15:28:03,248 | INFO     | mean y: 2686171.8380281692
[2026-01-26 15:28:42] 2026-01-26 15:28:03,248 | INFO     | intersect: 40527632564.86982
[2026-01-26 15:28:42] 2026-01-26 15:28:03,249 | INFO     | chi2: 0.9876457779466337
[2026-01-26 15:28:42] 2026-01-26 15:28:03,249 | INFO     | current chi2=0.9876457779466337 (change=2.379307743242513 %)
[2026-01-26 15:28:42] 2026-01-26 15:28:03,249 | INFO     | left removable region: 20
[2026-01-26 15:28:42] 2026-01-26 15:28:03,249 | INFO     | sum of square deviations: 549294020.0
[2026-01-26 15:28:42] 2026-01-26 15:28:03,249 | INFO     | sum of deviations: 118098013.00000006
[2026-01-26 15:28:42] 2026-01-26 15:28:03,254 | INFO     | mean x: 1769436916.0
[2026-01-26 15:28:42] 2026-01-26 15:28:03,254 | INFO     | mean y: 2686713.7107438017
[2026-01-26 15:28:42] 2026-01-26 15:28:03,254 | INFO     | intersect: -377741574.7829995
[2026-01-26 15:28:42] 2026-01-26 15:28:03,254 | INFO     | chi2: 0.010516693691019437
[2026-01-26 15:28:42] 2026-01-26 15:28:03,254 | INFO     | current memory leak: 0.21 B/s (using 121 data points, chi2=0.01)
[2026-01-26 15:28:42] 2026-01-26 15:28:03,255 | INFO     | could have reported an average CPU frequency of 3667 MHz (9 samples)
[2026-01-26 15:28:42] 2026-01-26 15:28:03,255 | INFO     | ..............................
[2026-01-26 15:28:42] 2026-01-26 15:28:03,255 | INFO     | . Timing measurements:
[2026-01-26 15:28:42] 2026-01-26 15:28:03,255 | INFO     | . get job = 0 s
[2026-01-26 15:28:42] 2026-01-26 15:28:03,255 | INFO     | . initial setup = 12 s
[2026-01-26 15:28:42] 2026-01-26 15:28:03,255 | INFO     | . payload setup = 12 s
[2026-01-26 15:28:42] 2026-01-26 15:28:03,255 | INFO     | . stage-in = 0 s
[2026-01-26 15:28:42] 2026-01-26 15:28:03,255 | INFO     | . payload execution = 9249 s
[2026-01-26 15:28:42] 2026-01-26 15:28:03,255 | INFO     | . stage-out = 1 s
[2026-01-26 15:28:42] 2026-01-26 15:28:03,255 | INFO     | . log creation = 0 s
[2026-01-26 15:28:42] 2026-01-26 15:28:03,256 | INFO     | ..............................
[2026-01-26 15:28:42] 2026-01-26 15:28:03,384 | INFO     | 
[2026-01-26 15:28:42] 2026-01-26 15:28:03,384 | INFO     | job summary report
[2026-01-26 15:28:42] 2026-01-26 15:28:03,384 | INFO     | --------------------------------------------------
[2026-01-26 15:28:42] 2026-01-26 15:28:03,384 | INFO     | PanDA job id: 6982977394
[2026-01-26 15:28:42] 2026-01-26 15:28:03,384 | INFO     | task id: 48330013
[2026-01-26 15:28:42] 2026-01-26 15:28:03,384 | INFO     | errors: (none)
[2026-01-26 15:28:42] 2026-01-26 15:28:03,384 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 15:28:42] 2026-01-26 15:28:03,384 | INFO     | pilot state: finished 
[2026-01-26 15:28:42] 2026-01-26 15:28:03,384 | INFO     | transexitcode: 0
[2026-01-26 15:28:42] 2026-01-26 15:28:03,384 | INFO     | exeerrorcode: 0
[2026-01-26 15:28:42] 2026-01-26 15:28:03,384 | INFO     | exeerrordiag: 
[2026-01-26 15:28:42] 2026-01-26 15:28:03,384 | INFO     | exitcode: 0
[2026-01-26 15:28:42] 2026-01-26 15:28:03,385 | INFO     | exitmsg: OK
[2026-01-26 15:28:42] 2026-01-26 15:28:03,385 | INFO     | cpuconsumptiontime: 48464 s
[2026-01-26 15:28:42] 2026-01-26 15:28:03,385 | INFO     | nevents: 400
[2026-01-26 15:28:42] 2026-01-26 15:28:03,385 | INFO     | neventsw: 0
[2026-01-26 15:28:42] 2026-01-26 15:28:03,385 | INFO     | pid: 480297
[2026-01-26 15:28:42] 2026-01-26 15:28:03,385 | INFO     | pgrp: 480297
[2026-01-26 15:28:42] 2026-01-26 15:28:03,385 | INFO     | corecount: 12
[2026-01-26 15:28:42] 2026-01-26 15:28:03,385 | INFO     | event service: False
[2026-01-26 15:28:42] 2026-01-26 15:28:03,385 | INFO     | sizes: {0: 2283943, 1: 2284404, 12: 2284404, 9266: 2312823, 9268: 2321923, 9270: 2322125}
[2026-01-26 15:28:42] 2026-01-26 15:28:03,385 | INFO     | --------------------------------------------------
[2026-01-26 15:28:42] 2026-01-26 15:28:03,385 | INFO     | 
[2026-01-26 15:28:42] 2026-01-26 15:28:03,385 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/3
[2026-01-26 15:28:42] 2026-01-26 15:28:03,427 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 15:28:42] 2026-01-26 15:28:03,427 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 15:28:42] 2026-01-26 15:28:03,428 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 15:28:42] 2026-01-26 15:28:03,428 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 15:28:42] 2026-01-26 15:28:03,428 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 15:28:42] 2026-01-26 15:28:03,428 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 15:28:42] 2026-01-26 15:28:03,428 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 15:28:42] 2026-01-26 15:28:03,428 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 15:28:42] 2026-01-26 15:28:03,428 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 15:28:42] 2026-01-26 15:28:03,428 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 15:28:42] 2026-01-26 15:28:03,428 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 15:28:42] 2026-01-26 15:28:03,428 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 15:28:42] 2026-01-26 15:28:03,428 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 15:28:42] 2026-01-26 15:28:03,428 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 15:28:42] 2026-01-26 15:28:03,431 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 15:28:42] 2026-01-26 15:28:03,431 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 15:28:42] 2026-01-26 15:28:03,431 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 15:28:42] 2026-01-26 15:28:03,431 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 15:28:42] 2026-01-26 15:28:03,431 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 15:28:42] 2026-01-26 15:28:03,431 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 15:28:42] 2026-01-26 15:28:03,431 | INFO     | job 6982977394 has completed (purged errors)
[2026-01-26 15:28:42] 2026-01-26 15:28:03,431 | INFO     | overall cleanup function is called
[2026-01-26 15:28:42] 2026-01-26 15:28:03,779 | WARNING  | process 480297 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 15:28:42] 2026-01-26 15:28:03,921 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/3/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 15:28:42] 2026-01-26 15:28:04,159 | INFO     | number of running child processes to parent process 480297: 1
[2026-01-26 15:28:42] 2026-01-26 15:28:04,162 | INFO     | maximum number of monitored processes: 6
[2026-01-26 15:28:42] 2026-01-26 15:28:04,162 | INFO     | aborting job monitoring since job object (job id=6982977394) has expired
[2026-01-26 15:28:42] 2026-01-26 15:28:04,445 | INFO     | --- collectZombieJob: --- 10, [480297]
[2026-01-26 15:28:42] 2026-01-26 15:28:04,445 | INFO     | zombie collector waiting for pid 480297
[2026-01-26 15:28:42] 2026-01-26 15:28:04,445 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 15:28:42] 2026-01-26 15:28:04,445 | INFO     | collected zombie processes
[2026-01-26 15:28:42] 2026-01-26 15:28:04,445 | INFO     | will attempt to kill all subprocesses of pid=480297
[2026-01-26 15:28:42] 2026-01-26 15:28:04,685 | INFO     | process IDs to be killed: [480297] (in reverse order)
[2026-01-26 15:28:42] 2026-01-26 15:28:04,781 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 15:28:42] 2026-01-26 15:28:04,782 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 15:28:42] 2026-01-26 15:28:04,787 | INFO     | did not find any defunct processes belonging to 480297
[2026-01-26 15:28:42] 2026-01-26 15:28:04,795 | INFO     | did not find any defunct processes belonging to 480297
[2026-01-26 15:28:42] 2026-01-26 15:28:04,800 | INFO     | ready for new job
[2026-01-26 15:28:42] 2026-01-26 15:28:04,803 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 15:28:42] 2026-01-26 15:28:04,804 | INFO     | **************************************
[2026-01-26 15:28:42] 2026-01-26 15:28:04,805 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 15:28:42] 2026-01-26 15:28:04,805 | INFO     | **************************************
[2026-01-26 15:28:42] 2026-01-26 15:28:04,805 | INFO     | 
[2026-01-26 15:28:42] 2026-01-26 15:28:04,807 | INFO     | architecture information:
[2026-01-26 15:28:42] 2026-01-26 15:28:04,809 | INFO     | executing command: cat /etc/os-release
[2026-01-26 15:28:42] 2026-01-26 15:28:04,843 | INFO     | cat /etc/os-release:
[2026-01-26 15:28:42] NAME="CentOS Linux"
[2026-01-26 15:28:42] VERSION="7 (Core)"
[2026-01-26 15:28:42] ID="centos"
[2026-01-26 15:28:42] ID_LIKE="rhel fedora"
[2026-01-26 15:28:42] VERSION_ID="7"
[2026-01-26 15:28:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 15:28:42] ANSI_COLOR="0;31"
[2026-01-26 15:28:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 15:28:42] HOME_URL="https://www.centos.org/"
[2026-01-26 15:28:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 15:28:42] 
[2026-01-26 15:28:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 15:28:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 15:28:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 15:28:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 15:28:42] 
[2026-01-26 15:28:42] 2026-01-26 15:28:04,843 | INFO     | **************************************
[2026-01-26 15:28:42] 2026-01-26 15:28:05,349 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/3
[2026-01-26 15:28:42] 2026-01-26 15:28:05,392 | INFO     | sufficient remaining disk space (106562584576 B)
[2026-01-26 15:28:42] 2026-01-26 15:28:05,393 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 15:28:42] 2026-01-26 15:28:05,393 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 15:28:42] 2026-01-26 15:28:05,393 | INFO     | update_server=False
[2026-01-26 15:28:42] 2026-01-26 15:28:05,393 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 15:28:42] 2026-01-26 15:28:05,393 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 15:28:42] 2026-01-26 15:28:05,394 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 15:28:42] 2026-01-26 15:28:05,394 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 15:28:42] 2026-01-26 15:28:05,394 | INFO     | aborting loop
[2026-01-26 15:28:42] 2026-01-26 15:28:06,069 | INFO     | all payload control threads have been joined
[2026-01-26 15:28:42] 2026-01-26 15:28:06,376 | INFO     | all data control threads have been joined
[2026-01-26 15:28:42] 2026-01-26 15:28:06,400 | INFO     | [job] job monitor thread has finished
[2026-01-26 15:28:42] 2026-01-26 15:28:06,400 | INFO     | [job] retrieve thread has finished
[2026-01-26 15:28:42] 2026-01-26 15:28:06,402 | INFO     | [job] queue monitor thread has finished
[2026-01-26 15:28:42] 2026-01-26 15:28:06,461 | INFO     | [data] copytool_in thread has finished
[2026-01-26 15:28:42] 2026-01-26 15:28:06,544 | INFO     | all job control threads have been joined
[2026-01-26 15:28:42] 2026-01-26 15:28:06,554 | INFO     | [payload] validate_post thread has finished
[2026-01-26 15:28:42] 2026-01-26 15:28:06,750 | INFO     | [job] validate thread has finished
[2026-01-26 15:28:42] 2026-01-26 15:28:06,943 | INFO     | [payload] failed_post thread has finished
[2026-01-26 15:28:42] 2026-01-26 15:28:07,074 | INFO     | [payload] control thread has finished
[2026-01-26 15:28:42] 2026-01-26 15:28:07,208 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 15:28:42] 2026-01-26 15:28:07,381 | INFO     | [data] control thread has finished
[2026-01-26 15:28:42] 2026-01-26 15:28:07,400 | INFO     | [data] copytool_out thread has finished
[2026-01-26 15:28:42] 2026-01-26 15:28:07,531 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 15:28:42] 2026-01-26 15:28:07,550 | INFO     | [job] control thread has finished
[2026-01-26 15:28:42] 2026-01-26 15:28:07,668 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 15:28:42] 2026-01-26 15:28:07,796 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 15:28:42] 2026-01-26 15:28:11,803 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 15:28:42] 2026-01-26 15:28:15,836 | INFO     | job.realtimelogging is not enabled
[2026-01-26 15:28:42] 2026-01-26 15:28:16,841 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 15:28:42] 2026-01-26 15:28:35,032 | INFO     | PID=475810 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-26 15:28:42] 2026-01-26 15:28:35,032 | INFO     | .. there are 3 such processes running
[2026-01-26 15:28:42] 2026-01-26 15:28:35,033 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 15:28:42] 2026-01-26 15:28:35,037 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 15:28:42] 2026-01-26 15:28:35,037 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 15:28:42] 2026-01-26 15:28:35,932 | INFO     | [monitor] cgroup control has ended
[2026-01-26 15:28:42] 2026-01-26 15:28:36,779 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138652935677760)>', '<ExcThread(monitor, started 138652449486592)>']
[2026-01-26 15:28:42] 2026-01-26 15:28:37,047 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 15:28:42] 2026-01-26 15:28:37,048 | INFO     | [monitor] control thread has ended
[2026-01-26 15:28:42] 2026-01-26 15:28:41,804 | INFO     | all workflow threads have been joined
[2026-01-26 15:28:42] 2026-01-26 15:28:41,804 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 15:28:42] 2026-01-26 15:28:41,804 | INFO     | traces error code: 0
[2026-01-26 15:28:42] 2026-01-26 15:28:41,804 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 15:28:42] 2026-01-26 15:28:42,049 [wrapper] ==== pilot stdout END ====
[2026-01-26 15:28:42] 2026-01-26 15:28:42,060 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 15:28:42] 2026-01-26 15:28:42,067 [wrapper] pilotpid: 475810
[2026-01-26 15:28:42] 2026-01-26 15:28:42,075 [wrapper] Pilot exit status: 0
[2026-01-26 15:28:42] 2026-01-26 15:28:42,106 [wrapper] pandaids: 6982977394
[2026-01-26 15:28:42] 2026-01-26 15:28:42,166 [wrapper] cleanup supervisor_pilot  512076 475811
[2026-01-26 15:28:42] 2026-01-26 15:28:42,175 [wrapper] Test setup, not cleaning
[2026-01-26 15:28:42] 2026-01-26 15:28:42,183 [wrapper] apfmon messages muted
[2026-01-26 15:28:42] 2026-01-26 15:28:42,190 [wrapper] ==== wrapper stdout END ====
[2026-01-26 15:28:42] 2026-01-26 15:28:42,198 [wrapper] ==== wrapper stderr END ====
[2026-01-26 15:28:42]  *** Error codes and diagnostics ***
[2026-01-26 15:28:42]     "exeErrorCode": 0,
[2026-01-26 15:28:42]     "exeErrorDiag": "",
[2026-01-26 15:28:42]     "pilotErrorCode": 0,
[2026-01-26 15:28:42]     "pilotErrorDiag": "",
[2026-01-26 15:28:42]  *** Listing of results directory ***
[2026-01-26 15:28:42] total 415936
[2026-01-26 15:28:42] -rwx------ 1 boinc boinc     36322 Jan 25 11:28 runpilot2-wrapper.sh
[2026-01-26 15:28:42] -rw-r--r-- 1 boinc boinc    584422 Jan 25 11:29 pilot3.tar.gz
[2026-01-26 15:28:42] -rw-r--r-- 1 boinc boinc      5111 Jan 25 11:31 queuedata.json
[2026-01-26 15:28:42] -rw-rw-r-- 1 boinc boinc       100 Jan 26 12:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 15:28:42] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 12:52 run_atlas
[2026-01-26 15:28:42] -rw-rw-r-- 1 boinc boinc       105 Jan 26 12:52 job.xml
[2026-01-26 15:28:42] -rw-r--r-- 2 boinc boinc 251317166 Jan 26 12:52 EVNT.48330011._000008.pool.root.1
[2026-01-26 15:28:42] drwxrwx--x 2 boinc boinc      4096 Jan 26 12:52 shared
[2026-01-26 15:28:42] -rw-r--r-- 2 boinc boinc    597764 Jan 26 12:52 input.tar.gz
[2026-01-26 15:28:42] -rw-r--r-- 2 boinc boinc     15845 Jan 26 12:52 start_atlas.sh
[2026-01-26 15:28:42] -rw-rw-r-- 1 boinc boinc      9470 Jan 26 12:52 init_data.xml
[2026-01-26 15:28:42] -rw-rw-r-- 1 boinc boinc         0 Jan 26 12:52 boinc_setup_complete
[2026-01-26 15:28:42] -rw-rw-r-- 1 boinc boinc         0 Jan 26 12:52 boinc_lockfile
[2026-01-26 15:28:42] -rw-rw-r-- 1 boinc boinc      2603 Jan 26 12:52 pandaJob.out
[2026-01-26 15:28:42] -rw------- 1 boinc boinc   1002189 Jan 26 12:53 agis_schedconf.cvmfs.json
[2026-01-26 15:28:42] -rw------- 1 boinc boinc   1516246 Jan 26 12:53 agis_ddmendpoints.agis.ALL.json
[2026-01-26 15:28:42] -rw------- 1 boinc boinc       426 Jan 26 12:53 workernode_map.json
[2026-01-26 15:28:42] drwx------ 5 boinc boinc      4096 Jan 26 12:53 pilot3
[2026-01-26 15:28:42] -rw------- 1 boinc boinc 167054056 Jan 26 15:27 HITS.48330013._000185.pool.root.1
[2026-01-26 15:28:42] -rw-rw-r-- 1 boinc boinc       529 Jan 26 15:27 boinc_task_state.xml
[2026-01-26 15:28:42] -rw------- 1 boinc boinc      1020 Jan 26 15:27 memory_monitor_summary.json
[2026-01-26 15:28:42] -rw------- 1 boinc boinc    451645 Jan 26 15:28 log.48330013._000185.job.log.tgz.1
[2026-01-26 15:28:42] -rw------- 1 boinc boinc      6290 Jan 26 15:28 heartbeat.json
[2026-01-26 15:28:42] -rw-rw-r-- 1 boinc boinc      8192 Jan 26 15:28 boinc_mmap_file
[2026-01-26 15:28:42] -rw-rw-r-- 1 boinc boinc        27 Jan 26 15:28 wrapper_checkpoint.txt
[2026-01-26 15:28:42] -rw------- 1 boinc boinc        95 Jan 26 15:28 pilot_heartbeat.json
[2026-01-26 15:28:42] -rw------- 1 boinc boinc      4914 Jan 26 15:28 pilotlog.txt
[2026-01-26 15:28:42] -rw------- 1 boinc boinc   1350119 Jan 26 15:28 log.48330013._000185.job.log.1
[2026-01-26 15:28:42] -rw------- 1 boinc boinc       357 Jan 26 15:28 output.list
[2026-01-26 15:28:42] -rw-rw-r-- 1 boinc boinc       620 Jan 26 15:28 runtime_log
[2026-01-26 15:28:42] -rw------- 1 boinc boinc   1822720 Jan 26 15:28 result.tar.gz
[2026-01-26 15:28:42] -rw-rw-r-- 1 boinc boinc      9176 Jan 26 15:28 runtime_log.err
[2026-01-26 15:28:42] -rw------- 1 boinc boinc       654 Jan 26 15:28 rUHKDmjTD48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmCq0KDmXpHK2m.diag
[2026-01-26 15:28:42] -rw-rw-r-- 1 boinc boinc     20830 Jan 26 15:28 stderr.txt
[2026-01-26 15:28:42] HITS file was successfully produced:
[2026-01-26 15:28:42] -rw------- 1 boinc boinc 167054056 Jan 26 15:27 shared/HITS.pool.root.1
[2026-01-26 15:28:42]  *** Contents of shared directory: ***
[2026-01-26 15:28:42] total 410956
[2026-01-26 15:28:42] -rw-r--r-- 2 boinc boinc 251317166 Jan 26 12:52 ATLAS.root_0
[2026-01-26 15:28:42] -rw-r--r-- 2 boinc boinc    597764 Jan 26 12:52 input.tar.gz
[2026-01-26 15:28:42] -rw-r--r-- 2 boinc boinc     15845 Jan 26 12:52 start_atlas.sh
[2026-01-26 15:28:42] -rw------- 1 boinc boinc 167054056 Jan 26 15:27 HITS.pool.root.1
[2026-01-26 15:28:42] -rw------- 1 boinc boinc   1822720 Jan 26 15:28 result.tar.gz
15:28:43 (471713): run_atlas exited; CPU time 48541.818374
15:28:43 (471713): called boinc_finish(0)

</stderr_txt>
]]>

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