Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:50:34 (2124792): wrapper (7.7.26015): starting
23:50:34 (2124792): wrapper: running run_atlas (--nthreads 2)
[2026-01-25 23:50:34] Arguments: --nthreads 2
[2026-01-25 23:50:34] Threads: 2
[2026-01-25 23:50:34] Checking for CVMFS
[2026-01-25 23:50:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-25 23:50:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-25 23:50:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-25 23:50:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-25 23:50:34] 2.9.2.0 1326838 7335 60948 155523 3 50 25186858 36864001 0 130560 0 2381472 99.982 225085 3688 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-25 23:50:34] CVMFS is ok
[2026-01-25 23:50:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-25 23:50:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-25 23:50:34] Further information can be found at the LHC@home message board.
[2026-01-25 23:50:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-25 23:50:34] Checking for apptainer binary...
[2026-01-25 23:50:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-25 23:50:34] Running /usr/bin/apptainer --version
[2026-01-25 23:50:34] apptainer version 1.4.1-1.1
[2026-01-25 23:50:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-25 23:50:34] thA334a
[2026-01-25 23:50:34] apptainer works
[2026-01-25 23:50:34] Set ATHENA_PROC_NUMBER=2
[2026-01-25 23:50:34] Set ATHENA_CORE_NUMBER=2
[2026-01-25 23:50:34] Starting ATLAS job with PandaID=6982709087
[2026-01-25 23:50:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 01:52:18]  *** The last 200 lines of the pilot log: ***
[2026-01-26 01:52:18] 2026-01-26 00:51:45,620 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 01:52:18] 2026-01-26 00:51:45,620 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 01:52:18] 2026-01-26 00:51:45,620 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 01:52:18] 2026-01-26 00:51:45,620 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 01:52:18] 2026-01-26 00:51:45,620 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 01:52:18] 2026-01-26 00:51:45,620 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 01:52:18] 2026-01-26 00:51:45,620 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 01:52:18] 2026-01-26 00:51:45,620 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 01:52:18] 2026-01-26 00:51:45,620 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 01:52:18] 2026-01-26 00:51:45,620 | INFO     | job 6982709087 has completed (purged errors)
[2026-01-26 01:52:18] 2026-01-26 00:51:45,620 | INFO     | overall cleanup function is called
[2026-01-26 01:52:18] 2026-01-26 00:51:46,575 | WARNING  | process 2133227 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 01:52:18] 2026-01-26 00:51:46,596 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 01:52:18] 2026-01-26 00:51:46,622 | INFO     | number of running child processes to parent process 2133227: 1
[2026-01-26 01:52:18] 2026-01-26 00:51:46,622 | INFO     | maximum number of monitored processes: 6
[2026-01-26 01:52:18] 2026-01-26 00:51:46,622 | INFO     | aborting job monitoring since job object (job id=6982709087) has expired
[2026-01-26 01:52:18] 2026-01-26 00:51:46,626 | INFO     | --- collectZombieJob: --- 10, [2133227]
[2026-01-26 01:52:18] 2026-01-26 00:51:46,626 | INFO     | zombie collector waiting for pid 2133227
[2026-01-26 01:52:18] 2026-01-26 00:51:46,626 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 01:52:18] 2026-01-26 00:51:46,626 | INFO     | collected zombie processes
[2026-01-26 01:52:18] 2026-01-26 00:51:46,626 | INFO     | will attempt to kill all subprocesses of pid=2133227
[2026-01-26 01:52:18] 2026-01-26 00:51:46,652 | INFO     | process IDs to be killed: [2133227] (in reverse order)
[2026-01-26 01:52:18] 2026-01-26 00:51:46,673 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 01:52:18] 2026-01-26 00:51:46,673 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 01:52:18] 2026-01-26 00:51:46,673 | INFO     | did not find any defunct processes belonging to 2133227
[2026-01-26 01:52:18] 2026-01-26 00:51:46,674 | INFO     | did not find any defunct processes belonging to 2133227
[2026-01-26 01:52:18] 2026-01-26 00:51:46,674 | INFO     | ready for new job
[2026-01-26 01:52:18] 2026-01-26 00:51:46,674 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 01:52:18] 2026-01-26 00:51:46,675 | INFO     | **************************************
[2026-01-26 01:52:18] 2026-01-26 00:51:46,675 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 01:52:18] 2026-01-26 00:51:46,675 | INFO     | **************************************
[2026-01-26 01:52:18] 2026-01-26 00:51:46,675 | INFO     | 
[2026-01-26 01:52:18] 2026-01-26 00:51:46,675 | INFO     | architecture information:
[2026-01-26 01:52:18] 2026-01-26 00:51:46,675 | INFO     | executing command: cat /etc/os-release
[2026-01-26 01:52:18] 2026-01-26 00:51:46,683 | INFO     | cat /etc/os-release:
[2026-01-26 01:52:18] NAME="CentOS Linux"
[2026-01-26 01:52:18] VERSION="7 (Core)"
[2026-01-26 01:52:18] ID="centos"
[2026-01-26 01:52:18] ID_LIKE="rhel fedora"
[2026-01-26 01:52:18] VERSION_ID="7"
[2026-01-26 01:52:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 01:52:18] ANSI_COLOR="0;31"
[2026-01-26 01:52:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 01:52:18] HOME_URL="https://www.centos.org/"
[2026-01-26 01:52:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 01:52:18] 
[2026-01-26 01:52:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 01:52:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 01:52:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 01:52:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 01:52:18] 
[2026-01-26 01:52:18] 2026-01-26 00:51:46,683 | INFO     | **************************************
[2026-01-26 01:52:18] 2026-01-26 00:51:47,186 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 01:52:18] 2026-01-26 00:51:47,198 | INFO     | sufficient remaining disk space (497217961984 B)
[2026-01-26 01:52:18] 2026-01-26 00:51:47,198 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 01:52:18] 2026-01-26 00:51:47,198 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 01:52:18] 2026-01-26 00:51:47,198 | INFO     | update_server=False
[2026-01-26 01:52:18] 2026-01-26 00:51:47,198 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 01:52:18] 2026-01-26 00:51:47,198 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 01:52:18] 2026-01-26 00:51:47,198 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 01:52:18] 2026-01-26 00:51:47,198 | INFO     | will abort loop
[2026-01-26 01:52:18] 2026-01-26 00:51:47,198 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 01:52:18] 2026-01-26 00:51:47,453 | INFO     | all payload control threads have been joined
[2026-01-26 01:52:18] 2026-01-26 00:51:48,068 | INFO     | all data control threads have been joined
[2026-01-26 01:52:18] 2026-01-26 00:51:48,203 | INFO     | [job] job monitor thread has finished
[2026-01-26 01:52:18] 2026-01-26 00:51:48,204 | INFO     | [job] queue monitor thread has finished
[2026-01-26 01:52:18] 2026-01-26 00:51:48,205 | INFO     | [job] retrieve thread has finished
[2026-01-26 01:52:18] 2026-01-26 00:51:48,250 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 01:52:18] 2026-01-26 00:51:48,327 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 01:52:18] 2026-01-26 00:51:48,442 | INFO     | [payload] failed_post thread has finished
[2026-01-26 01:52:18] 2026-01-26 00:51:48,459 | INFO     | [payload] control thread has finished
[2026-01-26 01:52:18] 2026-01-26 00:51:48,556 | INFO     | all job control threads have been joined
[2026-01-26 01:52:18] 2026-01-26 00:51:48,922 | INFO     | [payload] validate_post thread has finished
[2026-01-26 01:52:18] 2026-01-26 00:51:49,016 | INFO     | [job] validate thread has finished
[2026-01-26 01:52:18] 2026-01-26 00:51:49,057 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 01:52:18] 2026-01-26 00:51:49,073 | INFO     | [data] control thread has finished
[2026-01-26 01:52:18] 2026-01-26 00:51:49,146 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 01:52:18] 2026-01-26 00:51:49,545 | INFO     | [data] copytool_in thread has finished
[2026-01-26 01:52:18] 2026-01-26 00:51:49,562 | INFO     | [job] control thread has finished
[2026-01-26 01:52:18] 2026-01-26 00:51:50,257 | INFO     | [data] copytool_out thread has finished
[2026-01-26 01:52:18] 2026-01-26 00:51:51,204 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 01:52:18] 2026-01-26 00:51:57,657 | INFO     | job.realtimelogging is not enabled
[2026-01-26 01:52:18] 2026-01-26 00:51:58,663 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 01:52:18] 2026-01-26 00:52:03,506 | INFO     | [monitor] cgroup control has ended
[2026-01-26 01:52:18] 2026-01-26 00:52:05,147 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140350998275904)>', '<ExcThread(monitor, started 140350496679680)>']
[2026-01-26 01:52:18] 2026-01-26 00:52:10,173 | INFO     | all workflow threads have been joined
[2026-01-26 01:52:18] 2026-01-26 00:52:10,173 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 01:52:18] 2026-01-26 00:52:10,173 | INFO     | traces error code: 0
[2026-01-26 01:52:18] 2026-01-26 00:52:10,174 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 01:52:18] 2026-01-26 00:52:18,071 | INFO     | PID=2128821 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 01:52:18] 2026-01-26 00:52:18,071 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 01:52:18] 2026-01-26 00:52:18,071 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 01:52:18] 2026-01-26 00:52:18,071 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 01:52:18] 2026-01-26 00:52:18,071 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 01:52:18] 2026-01-26 00:52:18,071 | INFO     | [monitor] control thread has ended
[2026-01-26 01:52:18] 2026-01-26 00:52:18,108 [wrapper] ==== pilot stdout END ====
[2026-01-26 01:52:18] 2026-01-26 00:52:18,111 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 01:52:18] 2026-01-26 00:52:18,113 [wrapper] pilotpid: 2128821
[2026-01-26 01:52:18] 2026-01-26 00:52:18,116 [wrapper] Pilot exit status: 0
[2026-01-26 01:52:18] 2026-01-26 00:52:18,122 [wrapper] pandaids: 6982709087
[2026-01-26 01:52:18] 2026-01-26 00:52:18,134 [wrapper] cleanup supervisor_pilot 2138463 2128822
[2026-01-26 01:52:18] 2026-01-26 00:52:18,136 [wrapper] Test setup, not cleaning
[2026-01-26 01:52:18] 2026-01-26 00:52:18,138 [wrapper] apfmon messages muted
[2026-01-26 01:52:18] 2026-01-26 00:52:18,140 [wrapper] ==== wrapper stdout END ====
[2026-01-26 01:52:18] 2026-01-26 00:52:18,142 [wrapper] ==== wrapper stderr END ====
[2026-01-26 01:52:18]  *** Error codes and diagnostics ***
[2026-01-26 01:52:18]     "exeErrorCode": 0,
[2026-01-26 01:52:18]     "exeErrorDiag": "",
[2026-01-26 01:52:18]     "pilotErrorCode": 0,
[2026-01-26 01:52:18]     "pilotErrorDiag": "",
[2026-01-26 01:52:18]  *** Listing of results directory ***
[2026-01-26 01:52:18] total 664136
[2026-01-26 01:52:18] -rw-r--r-- 1 boinc boinc      5111 Jan 25 07:27 queuedata.json
[2026-01-26 01:52:18] -rw-r--r-- 1 boinc boinc    584422 Jan 25 07:27 pilot3.tar.gz
[2026-01-26 01:52:18] -rwx------ 1 boinc boinc     36322 Jan 25 07:27 runpilot2-wrapper.sh
[2026-01-26 01:52:18] -rw-r--r-- 1 boinc boinc       100 Jan 25 23:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 01:52:18] -rwxr-xr-x 1 boinc boinc      7986 Jan 25 23:50 run_atlas
[2026-01-26 01:52:18] -rw-r--r-- 1 boinc boinc       105 Jan 25 23:50 job.xml
[2026-01-26 01:52:18] -rw-r--r-- 2 boinc boinc 492585444 Jan 25 23:50 EVNT.48310721._000112.pool.root.1
[2026-01-26 01:52:18] -rw-r--r-- 2 boinc boinc    597765 Jan 25 23:50 input.tar.gz
[2026-01-26 01:52:18] -rw-r--r-- 2 boinc boinc     15845 Jan 25 23:50 start_atlas.sh
[2026-01-26 01:52:18] drwxrwx--x 2 boinc boinc      4096 Jan 25 23:50 shared
[2026-01-26 01:52:18] -rw-r--r-- 1 boinc boinc         0 Jan 25 23:50 boinc_setup_complete
[2026-01-26 01:52:18] -rw-r--r-- 1 boinc boinc      6207 Jan 25 23:50 init_data.xml
[2026-01-26 01:52:18] -rw-r--r-- 1 boinc boinc         0 Jan 25 23:50 boinc_lockfile
[2026-01-26 01:52:18] -rw-r--r-- 1 boinc boinc      2534 Jan 25 23:50 pandaJob.out
[2026-01-26 01:52:18] -rw------- 1 boinc boinc   1004254 Jan 25 23:50 agis_schedconf.cvmfs.json
[2026-01-26 01:52:18] -rw------- 1 boinc boinc   1516246 Jan 25 23:50 agis_ddmendpoints.agis.ALL.json
[2026-01-26 01:52:18] -rw------- 1 boinc boinc       427 Jan 25 23:50 workernode_map.json
[2026-01-26 01:52:18] drwx------ 5 boinc boinc      4096 Jan 25 23:50 pilot3
[2026-01-26 01:52:18] -rw------- 1 boinc boinc        95 Jan 26 01:51 pilot_heartbeat.json
[2026-01-26 01:52:18] -rw------- 1 boinc boinc 180858666 Jan 26 01:51 HITS.48310724._005590.pool.root.1
[2026-01-26 01:52:18] -rw-r--r-- 1 boinc boinc       530 Jan 26 01:51 boinc_task_state.xml
[2026-01-26 01:52:18] -rw------- 1 boinc boinc      1018 Jan 26 01:51 memory_monitor_summary.json
[2026-01-26 01:52:18] -rw------- 1 boinc boinc    302871 Jan 26 01:51 log.48310724._005590.job.log.tgz.1
[2026-01-26 01:52:18] -rw------- 1 boinc boinc      6302 Jan 26 01:51 heartbeat.json
[2026-01-26 01:52:18] -rw-r--r-- 1 boinc boinc        27 Jan 26 01:52 wrapper_checkpoint.txt
[2026-01-26 01:52:18] -rw-r--r-- 1 boinc boinc      8192 Jan 26 01:52 boinc_mmap_file
[2026-01-26 01:52:18] -rw------- 1 boinc boinc       747 Jan 26 01:52 pilotlog.txt
[2026-01-26 01:52:18] -rw------- 1 boinc boinc   1047423 Jan 26 01:52 log.48310724._005590.job.log.1
[2026-01-26 01:52:18] -rw------- 1 boinc boinc       357 Jan 26 01:52 output.list
[2026-01-26 01:52:18] -rw-r--r-- 1 boinc boinc       620 Jan 26 01:52 runtime_log
[2026-01-26 01:52:18] -rw------- 1 boinc boinc   1372160 Jan 26 01:52 result.tar.gz
[2026-01-26 01:52:18] -rw-r--r-- 1 boinc boinc      8901 Jan 26 01:52 runtime_log.err
[2026-01-26 01:52:18] -rw------- 1 boinc boinc       658 Jan 26 01:52 aNxLDm7l838n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPH0KDmtXDRLm.diag
[2026-01-26 01:52:18] -rw-r--r-- 1 boinc boinc     12450 Jan 26 01:52 stderr.txt
[2026-01-26 01:52:18] HITS file was successfully produced:
[2026-01-26 01:52:18] -rw------- 1 boinc boinc 180858666 Jan 26 01:51 shared/HITS.pool.root.1
[2026-01-26 01:52:18]  *** Contents of shared directory: ***
[2026-01-26 01:52:18] total 659612
[2026-01-26 01:52:18] -rw-r--r-- 2 boinc boinc 492585444 Jan 25 23:50 ATLAS.root_0
[2026-01-26 01:52:18] -rw-r--r-- 2 boinc boinc    597765 Jan 25 23:50 input.tar.gz
[2026-01-26 01:52:18] -rw-r--r-- 2 boinc boinc     15845 Jan 25 23:50 start_atlas.sh
[2026-01-26 01:52:18] -rw------- 1 boinc boinc 180858666 Jan 26 01:51 HITS.pool.root.1
[2026-01-26 01:52:18] -rw------- 1 boinc boinc   1372160 Jan 26 01:52 result.tar.gz
01:52:20 (2124792): run_atlas exited; CPU time 14092.903048
01:52:20 (2124792): called boinc_finish(0)

</stderr_txt>
]]>

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