Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:51:22 (1615804): wrapper (7.7.26015): starting
02:51:22 (1615804): wrapper: running run_atlas (--nthreads 2)
[2026-01-26 02:51:22] Arguments: --nthreads 2
[2026-01-26 02:51:22] Threads: 2
[2026-01-26 02:51:22] Checking for CVMFS
[2026-01-26 02:51:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 02:51:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 02:51:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 02:51:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 02:51:23] 2.9.2.0 843047 7565 61404 155527 0 50 24402321 36864001 0 130560 0 2307864 99.982 226552 5912 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 02:51:23] CVMFS is ok
[2026-01-26 02:51:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 02:51:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 02:51:23] Further information can be found at the LHC@home message board.
[2026-01-26 02:51:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 02:51:23] Checking for apptainer binary...
[2026-01-26 02:51:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 02:51:23] Running /usr/bin/apptainer --version
[2026-01-26 02:51:23] apptainer version 1.4.1-1.1
[2026-01-26 02:51:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 02:51:23] thA331
[2026-01-26 02:51:23] apptainer works
[2026-01-26 02:51:23] Set ATHENA_PROC_NUMBER=2
[2026-01-26 02:51:23] Set ATHENA_CORE_NUMBER=2
[2026-01-26 02:51:23] Starting ATLAS job with PandaID=6983016029
[2026-01-26 02:51:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 04:58:24]  *** The last 200 lines of the pilot log: ***
[2026-01-26 04:58:24] 2026-01-26 03:57:52,572 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 04:58:24] 2026-01-26 03:57:52,572 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 04:58:24] 2026-01-26 03:57:52,572 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 04:58:24] 2026-01-26 03:57:52,572 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 04:58:24] 2026-01-26 03:57:52,572 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 04:58:24] 2026-01-26 03:57:52,572 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 04:58:24] 2026-01-26 03:57:52,573 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 04:58:24] 2026-01-26 03:57:52,573 | INFO     | job 6983016029 has completed (purged errors)
[2026-01-26 04:58:24] 2026-01-26 03:57:52,573 | INFO     | overall cleanup function is called
[2026-01-26 04:58:24] 2026-01-26 03:57:53,579 | INFO     | --- collectZombieJob: --- 10, [1624235]
[2026-01-26 04:58:24] 2026-01-26 03:57:53,579 | INFO     | zombie collector waiting for pid 1624235
[2026-01-26 04:58:24] 2026-01-26 03:57:53,580 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 04:58:24] 2026-01-26 03:57:53,580 | INFO     | collected zombie processes
[2026-01-26 04:58:24] 2026-01-26 03:57:53,580 | INFO     | will attempt to kill all subprocesses of pid=1624235
[2026-01-26 04:58:24] 2026-01-26 03:57:53,615 | INFO     | process IDs to be killed: [1624235] (in reverse order)
[2026-01-26 04:58:24] 2026-01-26 03:57:53,635 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 04:58:24] 2026-01-26 03:57:53,636 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 04:58:24] 2026-01-26 03:57:53,636 | INFO     | did not find any defunct processes belonging to 1624235
[2026-01-26 04:58:24] 2026-01-26 03:57:53,637 | INFO     | did not find any defunct processes belonging to 1624235
[2026-01-26 04:58:24] 2026-01-26 03:57:53,637 | INFO     | ready for new job
[2026-01-26 04:58:24] 2026-01-26 03:57:53,637 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 04:58:24] 2026-01-26 03:57:53,638 | INFO     | **************************************
[2026-01-26 04:58:24] 2026-01-26 03:57:53,638 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 04:58:24] 2026-01-26 03:57:53,638 | INFO     | **************************************
[2026-01-26 04:58:24] 2026-01-26 03:57:53,638 | INFO     | 
[2026-01-26 04:58:24] 2026-01-26 03:57:53,638 | INFO     | architecture information:
[2026-01-26 04:58:24] 2026-01-26 03:57:53,638 | INFO     | executing command: cat /etc/os-release
[2026-01-26 04:58:24] 2026-01-26 03:57:53,647 | INFO     | cat /etc/os-release:
[2026-01-26 04:58:24] NAME="CentOS Linux"
[2026-01-26 04:58:24] VERSION="7 (Core)"
[2026-01-26 04:58:24] ID="centos"
[2026-01-26 04:58:24] ID_LIKE="rhel fedora"
[2026-01-26 04:58:24] VERSION_ID="7"
[2026-01-26 04:58:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 04:58:24] ANSI_COLOR="0;31"
[2026-01-26 04:58:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 04:58:24] HOME_URL="https://www.centos.org/"
[2026-01-26 04:58:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 04:58:24] 
[2026-01-26 04:58:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 04:58:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 04:58:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 04:58:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 04:58:24] 
[2026-01-26 04:58:24] 2026-01-26 03:57:53,647 | INFO     | **************************************
[2026-01-26 04:58:24] 2026-01-26 03:57:54,150 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 04:58:24] 2026-01-26 03:57:54,161 | INFO     | sufficient remaining disk space (234449010688 B)
[2026-01-26 04:58:24] 2026-01-26 03:57:54,162 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 04:58:24] 2026-01-26 03:57:54,162 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 04:58:24] 2026-01-26 03:57:54,162 | INFO     | update_server=False
[2026-01-26 04:58:24] 2026-01-26 03:57:54,162 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 04:58:24] 2026-01-26 03:57:54,162 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 04:58:24] 2026-01-26 03:57:54,162 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 04:58:24] 2026-01-26 03:57:54,821 | INFO     | all data control threads have been joined
[2026-01-26 04:58:24] 2026-01-26 03:57:54,865 | INFO     | all job control threads have been joined
[2026-01-26 04:58:24] 2026-01-26 03:57:55,162 | INFO     | [monitor] cgroup control has ended
[2026-01-26 04:58:24] 2026-01-26 03:57:55,166 | INFO     | [job] queue monitor thread has finished
[2026-01-26 04:58:24] 2026-01-26 03:57:55,167 | INFO     | [job] retrieve thread has finished
[2026-01-26 04:58:24] 2026-01-26 03:57:55,478 | INFO     | all payload control threads have been joined
[2026-01-26 04:58:24] 2026-01-26 03:57:55,712 | WARNING  | process 1624235 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 04:58:24] 2026-01-26 03:57:55,738 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 04:58:24] 2026-01-26 03:57:55,768 | INFO     | number of running child processes to parent process 1624235: 1
[2026-01-26 04:58:24] 2026-01-26 03:57:55,769 | INFO     | maximum number of monitored processes: 6
[2026-01-26 04:58:24] 2026-01-26 03:57:55,769 | INFO     | aborting job monitoring since job object (job id=6983016029) has expired
[2026-01-26 04:58:24] 2026-01-26 03:57:55,769 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 04:58:24] 2026-01-26 03:57:55,769 | INFO     | will abort loop
[2026-01-26 04:58:24] 2026-01-26 03:57:55,775 | INFO     | [payload] failed_post thread has finished
[2026-01-26 04:58:24] 2026-01-26 03:57:55,827 | INFO     | [data] control thread has finished
[2026-01-26 04:58:24] 2026-01-26 03:57:55,871 | INFO     | [job] control thread has finished
[2026-01-26 04:58:24] 2026-01-26 03:57:55,892 | INFO     | [job] validate thread has finished
[2026-01-26 04:58:24] 2026-01-26 03:57:55,973 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 04:58:24] 2026-01-26 03:57:56,137 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 04:58:24] 2026-01-26 03:57:56,166 | INFO     | [data] copytool_out thread has finished
[2026-01-26 04:58:24] 2026-01-26 03:57:56,166 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 04:58:24] 2026-01-26 03:57:56,216 | INFO     | job.realtimelogging is not enabled
[2026-01-26 04:58:24] 2026-01-26 03:57:56,250 | INFO     | [data] copytool_in thread has finished
[2026-01-26 04:58:24] 2026-01-26 03:57:56,484 | INFO     | [payload] control thread has finished
[2026-01-26 04:58:24] 2026-01-26 03:57:56,495 | INFO     | [payload] validate_post thread has finished
[2026-01-26 04:58:24] 2026-01-26 03:57:56,774 | INFO     | [job] job monitor thread has finished
[2026-01-26 04:58:24] 2026-01-26 03:57:57,007 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 04:58:24] 2026-01-26 03:57:57,220 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 04:58:24] 2026-01-26 03:58:01,014 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 04:58:24] 2026-01-26 03:58:01,164 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140607738279744)>', '<ExcThread(monitor, started 140606978365184)>']
[2026-01-26 04:58:24] 2026-01-26 03:58:06,190 | INFO     | all workflow threads have been joined
[2026-01-26 04:58:24] 2026-01-26 03:58:06,191 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 04:58:24] 2026-01-26 03:58:06,192 | INFO     | traces error code: 0
[2026-01-26 04:58:24] 2026-01-26 03:58:06,192 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 04:58:24] 2026-01-26 03:58:24,434 | INFO     | PID=1619828 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 04:58:24] 2026-01-26 03:58:24,435 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 04:58:24] 2026-01-26 03:58:24,435 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 04:58:24] 2026-01-26 03:58:24,435 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 04:58:24] 2026-01-26 03:58:24,435 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 04:58:24] 2026-01-26 03:58:24,435 | CRITICAL | thread 'MainThread' is not alive
[2026-01-26 04:58:24] 2026-01-26 03:58:24,435 | INFO     | [monitor] control thread has ended
[2026-01-26 04:58:24] 2026-01-26 03:58:24,474 [wrapper] ==== pilot stdout END ====
[2026-01-26 04:58:24] 2026-01-26 03:58:24,476 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 04:58:24] 2026-01-26 03:58:24,479 [wrapper] pilotpid: 1619828
[2026-01-26 04:58:24] 2026-01-26 03:58:24,481 [wrapper] Pilot exit status: 0
[2026-01-26 04:58:24] 2026-01-26 03:58:24,487 [wrapper] pandaids: 6983016029
[2026-01-26 04:58:24] 2026-01-26 03:58:24,499 [wrapper] cleanup supervisor_pilot 1629120 1619829
[2026-01-26 04:58:24] 2026-01-26 03:58:24,502 [wrapper] Test setup, not cleaning
[2026-01-26 04:58:24] 2026-01-26 03:58:24,504 [wrapper] apfmon messages muted
[2026-01-26 04:58:24] 2026-01-26 03:58:24,506 [wrapper] ==== wrapper stdout END ====
[2026-01-26 04:58:24] 2026-01-26 03:58:24,508 [wrapper] ==== wrapper stderr END ====
[2026-01-26 04:58:24]  *** Error codes and diagnostics ***
[2026-01-26 04:58:24]     "exeErrorCode": 0,
[2026-01-26 04:58:24]     "exeErrorDiag": "",
[2026-01-26 04:58:24]     "pilotErrorCode": 0,
[2026-01-26 04:58:24]     "pilotErrorDiag": "",
[2026-01-26 04:58:24]  *** Listing of results directory ***
[2026-01-26 04:58:24] total 666164
[2026-01-26 04:58:24] -rw-r--r-- 1 boinc boinc    584422 Jan 25 15:11 pilot3.tar.gz
[2026-01-26 04:58:24] -rw-r--r-- 1 boinc boinc      5111 Jan 25 15:11 queuedata.json
[2026-01-26 04:58:24] -rwx------ 1 boinc boinc     36322 Jan 25 15:12 runpilot2-wrapper.sh
[2026-01-26 04:58:24] -rw-r--r-- 1 boinc boinc       100 Jan 26 02:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 04:58:24] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 02:51 run_atlas
[2026-01-26 04:58:24] -rw-r--r-- 1 boinc boinc       105 Jan 26 02:51 job.xml
[2026-01-26 04:58:24] -rw-r--r-- 2 boinc boinc 493431810 Jan 26 02:51 EVNT.48317929._000026.pool.root.1
[2026-01-26 04:58:24] -rw-r--r-- 2 boinc boinc    597750 Jan 26 02:51 input.tar.gz
[2026-01-26 04:58:24] -rw-r--r-- 2 boinc boinc     15845 Jan 26 02:51 start_atlas.sh
[2026-01-26 04:58:24] drwxrwx--x 2 boinc boinc      4096 Jan 26 02:51 shared
[2026-01-26 04:58:24] -rw-r--r-- 1 boinc boinc         0 Jan 26 02:51 boinc_setup_complete
[2026-01-26 04:58:24] -rw-r--r-- 1 boinc boinc      6206 Jan 26 02:51 init_data.xml
[2026-01-26 04:58:24] -rw-r--r-- 1 boinc boinc         0 Jan 26 02:51 boinc_lockfile
[2026-01-26 04:58:24] -rw-r--r-- 1 boinc boinc      2508 Jan 26 02:51 pandaJob.out
[2026-01-26 04:58:24] -rw------- 1 boinc boinc   1004246 Jan 26 02:51 agis_schedconf.cvmfs.json
[2026-01-26 04:58:24] -rw------- 1 boinc boinc   1516246 Jan 26 02:51 agis_ddmendpoints.agis.ALL.json
[2026-01-26 04:58:24] -rw------- 1 boinc boinc       417 Jan 26 02:51 workernode_map.json
[2026-01-26 04:58:24] drwx------ 5 boinc boinc      4096 Jan 26 02:51 pilot3
[2026-01-26 04:58:24] -rw-r--r-- 1 boinc boinc       530 Jan 26 04:57 boinc_task_state.xml
[2026-01-26 04:58:24] -rw------- 1 boinc boinc 181999793 Jan 26 04:57 HITS.48317931._001306.pool.root.1
[2026-01-26 04:58:24] -rw------- 1 boinc boinc      1011 Jan 26 04:57 memory_monitor_summary.json
[2026-01-26 04:58:24] -rw------- 1 boinc boinc    311260 Jan 26 04:57 log.48317931._001306.job.log.tgz.1
[2026-01-26 04:58:24] -rw------- 1 boinc boinc      6286 Jan 26 04:57 heartbeat.json
[2026-01-26 04:58:24] -rw-r--r-- 1 boinc boinc      8192 Jan 26 04:57 boinc_mmap_file
[2026-01-26 04:58:24] -rw-r--r-- 1 boinc boinc        27 Jan 26 04:57 wrapper_checkpoint.txt
[2026-01-26 04:58:24] -rw------- 1 boinc boinc       817 Jan 26 04:58 pilotlog.txt
[2026-01-26 04:58:24] -rw------- 1 boinc boinc        95 Jan 26 04:58 pilot_heartbeat.json
[2026-01-26 04:58:24] -rw------- 1 boinc boinc   1088440 Jan 26 04:58 log.48317931._001306.job.log.1
[2026-01-26 04:58:24] -rw------- 1 boinc boinc       357 Jan 26 04:58 output.list
[2026-01-26 04:58:24] -rw-r--r-- 1 boinc boinc       620 Jan 26 04:58 runtime_log
[2026-01-26 04:58:24] -rw------- 1 boinc boinc   1413120 Jan 26 04:58 result.tar.gz
[2026-01-26 04:58:24] -rw-r--r-- 1 boinc boinc      8896 Jan 26 04:58 runtime_log.err
[2026-01-26 04:58:24] -rw------- 1 boinc boinc       658 Jan 26 04:58 bExLDmA2F48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmL60KDmLYe84m.diag
[2026-01-26 04:58:24] -rw-r--r-- 1 boinc boinc     12336 Jan 26 04:58 stderr.txt
[2026-01-26 04:58:24] HITS file was successfully produced:
[2026-01-26 04:58:24] -rw------- 1 boinc boinc 181999793 Jan 26 04:57 shared/HITS.pool.root.1
[2026-01-26 04:58:24]  *** Contents of shared directory: ***
[2026-01-26 04:58:24] total 661592
[2026-01-26 04:58:24] -rw-r--r-- 2 boinc boinc 493431810 Jan 26 02:51 ATLAS.root_0
[2026-01-26 04:58:24] -rw-r--r-- 2 boinc boinc    597750 Jan 26 02:51 input.tar.gz
[2026-01-26 04:58:24] -rw-r--r-- 2 boinc boinc     15845 Jan 26 02:51 start_atlas.sh
[2026-01-26 04:58:24] -rw------- 1 boinc boinc 181999793 Jan 26 04:57 HITS.pool.root.1
[2026-01-26 04:58:24] -rw------- 1 boinc boinc   1413120 Jan 26 04:58 result.tar.gz
04:58:25 (1615804): run_atlas exited; CPU time 14754.989049
04:58:25 (1615804): called boinc_finish(0)

</stderr_txt>
]]>

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