Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
11:32:49 (611822): wrapper (7.7.26015): starting
11:32:49 (611822): wrapper: running run_atlas (--nthreads 12)
[2026-01-26 11:32:49] Arguments: --nthreads 12
[2026-01-26 11:32:49] Threads: 12
[2026-01-26 11:32:49] Checking for CVMFS
[2026-01-26 11:32:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 11:32:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 11:32:50] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 11:32:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 11:32:50] 2.13.3.0 1914 1239 49616 155545 3 188 3870914 4096001 2218 130560 0 1804652 99.991 52756 585 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-26 11:32:50] CVMFS is ok
[2026-01-26 11:32:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 11:32:50] Checking for apptainer binary...
[2026-01-26 11:32:50] apptainer is not installed, using version from CVMFS
[2026-01-26 11:32:50] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 11:32:50] dualxeon2
[2026-01-26 11:32:50] apptainer works
[2026-01-26 11:32:50] Set ATHENA_PROC_NUMBER=12
[2026-01-26 11:32:50] Set ATHENA_CORE_NUMBER=12
[2026-01-26 11:32:50] Starting ATLAS job with PandaID=6983015878
[2026-01-26 11:32:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 13:26:23]  *** The last 200 lines of the pilot log: ***
[2026-01-26 13:26:23] 2026-01-26 13:25:21,746 | INFO     | mean y: 2655589.7454545456
[2026-01-26 13:26:23] 2026-01-26 13:25:21,746 | INFO     | intersect: -74418168043.31198
[2026-01-26 13:26:23] 2026-01-26 13:25:21,746 | INFO     | chi2: 1.7506369909784378
[2026-01-26 13:26:23] 2026-01-26 13:25:21,747 | INFO     | sum of square deviations: 358927660.0
[2026-01-26 13:26:23] 2026-01-26 13:25:21,747 | INFO     | sum of deviations: 17042535629.999996
[2026-01-26 13:26:23] 2026-01-26 13:25:21,747 | INFO     | mean x: 1769430378.0
[2026-01-26 13:26:23] 2026-01-26 13:25:21,748 | INFO     | mean y: 2654696.276190476
[2026-01-26 13:26:23] 2026-01-26 13:25:21,748 | INFO     | intersect: -84013105643.47963
[2026-01-26 13:26:23] 2026-01-26 13:25:21,748 | INFO     | chi2: 1.7511560896357201
[2026-01-26 13:26:23] 2026-01-26 13:25:21,748 | INFO     | current chi2=1.7511560896357201 (change=-0.029651987245634146 %)
[2026-01-26 13:26:23] 2026-01-26 13:25:21,748 | INFO     | right removable region: 104
[2026-01-26 13:26:23] 2026-01-26 13:25:21,752 | INFO     | sum of square deviations: 358927660.0
[2026-01-26 13:26:23] 2026-01-26 13:25:21,752 | INFO     | sum of deviations: -3505449851.000001
[2026-01-26 13:26:23] 2026-01-26 13:25:21,752 | INFO     | mean x: 1769430683.0
[2026-01-26 13:26:23] 2026-01-26 13:25:21,752 | INFO     | mean y: 2713850.476190476
[2026-01-26 13:26:23] 2026-01-26 13:25:21,753 | INFO     | intersect: 17283774117.82137
[2026-01-26 13:26:23] 2026-01-26 13:25:21,753 | INFO     | chi2: 0.0828644903462999
[2026-01-26 13:26:23] 2026-01-26 13:25:21,753 | INFO     | current chi2=0.0828644903462999 (change=95.26660919577698 %)
[2026-01-26 13:26:23] 2026-01-26 13:25:21,753 | INFO     | sum of square deviations: 310052325.0
[2026-01-26 13:26:23] 2026-01-26 13:25:21,754 | INFO     | sum of deviations: -6764094922.0
[2026-01-26 13:26:23] 2026-01-26 13:25:21,754 | INFO     | mean x: 1769430835.5
[2026-01-26 13:26:23] 2026-01-26 13:25:21,754 | INFO     | mean y: 2723770.6
[2026-01-26 13:26:23] 2026-01-26 13:25:21,754 | INFO     | intersect: 38604589211.33091
[2026-01-26 13:26:23] 2026-01-26 13:25:21,758 | INFO     | chi2: 0.011295014862721912
[2026-01-26 13:26:23] 2026-01-26 13:25:21,758 | INFO     | current chi2=0.011295014862721912 (change=86.3692942350592 %)
[2026-01-26 13:26:23] 2026-01-26 13:25:21,758 | INFO     | sum of square deviations: 265828240.0
[2026-01-26 13:26:23] 2026-01-26 13:25:21,758 | INFO     | sum of deviations: -6425538578.0
[2026-01-26 13:26:23] 2026-01-26 13:25:21,759 | INFO     | mean x: 1769430988.0
[2026-01-26 13:26:23] 2026-01-26 13:25:21,759 | INFO     | mean y: 2722590.7684210525
[2026-01-26 13:26:23] 2026-01-26 13:25:21,759 | INFO     | intersect: 42772998143.518776
[2026-01-26 13:26:23] 2026-01-26 13:25:21,759 | INFO     | chi2: 0.009895551572798068
[2026-01-26 13:26:23] 2026-01-26 13:25:21,759 | INFO     | current chi2=0.009895551572798068 (change=12.390096931546632 %)
[2026-01-26 13:26:23] 2026-01-26 13:25:21,759 | INFO     | left removable region: 30
[2026-01-26 13:26:23] 2026-01-26 13:25:21,760 | INFO     | sum of square deviations: 125630262.5
[2026-01-26 13:26:23] 2026-01-26 13:25:21,760 | INFO     | sum of deviations: -3750450830.5
[2026-01-26 13:26:23] 2026-01-26 13:25:21,760 | INFO     | mean x: 1769431262.5
[2026-01-26 13:26:23] 2026-01-26 13:25:21,760 | INFO     | mean y: 2716762.9864864866
[2026-01-26 13:26:23] 2026-01-26 13:25:21,761 | INFO     | intersect: 52825697594.979805
[2026-01-26 13:26:23] 2026-01-26 13:25:21,761 | INFO     | chi2: 0.008491123701438463
[2026-01-26 13:26:23] 2026-01-26 13:25:21,761 | INFO     | current memory leak: -29.85 B/s (using 74 data points, chi2=0.01)
[2026-01-26 13:26:23] 2026-01-26 13:25:21,764 | INFO     | could have reported an average CPU frequency of 2507 MHz (7 samples)
[2026-01-26 13:26:23] 2026-01-26 13:25:21,765 | INFO     | ..............................
[2026-01-26 13:26:23] 2026-01-26 13:25:21,765 | INFO     | . Timing measurements:
[2026-01-26 13:26:23] 2026-01-26 13:25:21,765 | INFO     | . get job = 0 s
[2026-01-26 13:26:23] 2026-01-26 13:25:21,765 | INFO     | . initial setup = 5 s
[2026-01-26 13:26:23] 2026-01-26 13:25:21,765 | INFO     | . payload setup = 5 s
[2026-01-26 13:26:23] 2026-01-26 13:25:21,765 | INFO     | . stage-in = 0 s
[2026-01-26 13:26:23] 2026-01-26 13:25:21,765 | INFO     | . payload execution = 6713 s
[2026-01-26 13:26:23] 2026-01-26 13:25:21,765 | INFO     | . stage-out = 1 s
[2026-01-26 13:26:23] 2026-01-26 13:25:21,765 | INFO     | . log creation = 0 s
[2026-01-26 13:26:23] 2026-01-26 13:25:21,766 | INFO     | ..............................
[2026-01-26 13:26:23] 2026-01-26 13:25:21,912 | INFO     | time since job start (6736s) is within the limit (349056.0s)
[2026-01-26 13:26:23] 2026-01-26 13:25:22,155 | INFO     | 
[2026-01-26 13:26:23] 2026-01-26 13:25:22,156 | INFO     | job summary report
[2026-01-26 13:26:23] 2026-01-26 13:25:22,156 | INFO     | --------------------------------------------------
[2026-01-26 13:26:23] 2026-01-26 13:25:22,156 | INFO     | PanDA job id: 6983015878
[2026-01-26 13:26:23] 2026-01-26 13:25:22,156 | INFO     | task id: 48317931
[2026-01-26 13:26:23] 2026-01-26 13:25:22,156 | INFO     | errors: (none)
[2026-01-26 13:26:23] 2026-01-26 13:25:22,156 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 13:26:23] 2026-01-26 13:25:22,157 | INFO     | pilot state: finished 
[2026-01-26 13:26:23] 2026-01-26 13:25:22,157 | INFO     | transexitcode: 0
[2026-01-26 13:26:23] 2026-01-26 13:25:22,157 | INFO     | exeerrorcode: 0
[2026-01-26 13:26:23] 2026-01-26 13:25:22,157 | INFO     | exeerrordiag: 
[2026-01-26 13:26:23] 2026-01-26 13:25:22,157 | INFO     | exitcode: 0
[2026-01-26 13:26:23] 2026-01-26 13:25:22,157 | INFO     | exitmsg: OK
[2026-01-26 13:26:23] 2026-01-26 13:25:22,157 | INFO     | cpuconsumptiontime: 54134 s
[2026-01-26 13:26:23] 2026-01-26 13:25:22,157 | INFO     | nevents: 400
[2026-01-26 13:26:23] 2026-01-26 13:25:22,157 | INFO     | neventsw: 0
[2026-01-26 13:26:23] 2026-01-26 13:25:22,158 | INFO     | pid: 620601
[2026-01-26 13:26:23] 2026-01-26 13:25:22,158 | INFO     | pgrp: 620601
[2026-01-26 13:26:23] 2026-01-26 13:25:22,158 | INFO     | corecount: 12
[2026-01-26 13:26:23] 2026-01-26 13:25:22,158 | INFO     | event service: False
[2026-01-26 13:26:23] 2026-01-26 13:25:22,158 | INFO     | sizes: {0: 2283086, 1: 2284227, 12: 2284227, 6722: 2311386, 6724: 2320486, 6725: 2320624}
[2026-01-26 13:26:23] 2026-01-26 13:25:22,158 | INFO     | --------------------------------------------------
[2026-01-26 13:26:23] 2026-01-26 13:25:22,158 | INFO     | 
[2026-01-26 13:26:23] 2026-01-26 13:25:22,158 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/1
[2026-01-26 13:26:23] 2026-01-26 13:25:22,196 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 13:26:23] 2026-01-26 13:25:22,196 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 13:26:23] 2026-01-26 13:25:22,196 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 13:26:23] 2026-01-26 13:25:22,197 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 13:26:23] 2026-01-26 13:25:22,197 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 13:26:23] 2026-01-26 13:25:22,197 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 13:26:23] 2026-01-26 13:25:22,197 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 13:26:23] 2026-01-26 13:25:22,197 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 13:26:23] 2026-01-26 13:25:22,197 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 13:26:23] 2026-01-26 13:25:22,197 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 13:26:23] 2026-01-26 13:25:22,198 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 13:26:23] 2026-01-26 13:25:22,198 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 13:26:23] 2026-01-26 13:25:22,198 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 13:26:23] 2026-01-26 13:25:22,198 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 13:26:23] 2026-01-26 13:25:22,198 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 13:26:23] 2026-01-26 13:25:22,198 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 13:26:23] 2026-01-26 13:25:22,201 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 13:26:23] 2026-01-26 13:25:22,201 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 13:26:23] 2026-01-26 13:25:22,202 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 13:26:23] 2026-01-26 13:25:22,202 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 13:26:23] 2026-01-26 13:25:22,202 | INFO     | job 6983015878 has completed (purged errors)
[2026-01-26 13:26:23] 2026-01-26 13:25:22,202 | INFO     | overall cleanup function is called
[2026-01-26 13:26:23] 2026-01-26 13:25:23,214 | INFO     | --- collectZombieJob: --- 10, [620601]
[2026-01-26 13:26:23] 2026-01-26 13:25:23,215 | INFO     | zombie collector waiting for pid 620601
[2026-01-26 13:26:23] 2026-01-26 13:25:23,215 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 13:26:23] 2026-01-26 13:25:23,215 | INFO     | collected zombie processes
[2026-01-26 13:26:23] 2026-01-26 13:25:23,215 | INFO     | will attempt to kill all subprocesses of pid=620601
[2026-01-26 13:26:23] 2026-01-26 13:25:23,491 | INFO     | process IDs to be killed: [620601] (in reverse order)
[2026-01-26 13:26:23] 2026-01-26 13:25:23,601 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 13:26:23] 2026-01-26 13:25:23,602 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 13:26:23] 2026-01-26 13:25:23,612 | INFO     | did not find any defunct processes belonging to 620601
[2026-01-26 13:26:23] 2026-01-26 13:25:23,624 | INFO     | did not find any defunct processes belonging to 620601
[2026-01-26 13:26:23] 2026-01-26 13:25:23,625 | INFO     | ready for new job
[2026-01-26 13:26:23] 2026-01-26 13:25:23,625 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 13:26:23] 2026-01-26 13:25:23,627 | INFO     | **************************************
[2026-01-26 13:26:23] 2026-01-26 13:25:23,627 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 13:26:23] 2026-01-26 13:25:23,631 | INFO     | **************************************
[2026-01-26 13:26:23] 2026-01-26 13:25:23,631 | INFO     | 
[2026-01-26 13:26:23] 2026-01-26 13:25:23,633 | INFO     | architecture information:
[2026-01-26 13:26:23] 2026-01-26 13:25:23,634 | INFO     | executing command: cat /etc/os-release
[2026-01-26 13:26:23] 2026-01-26 13:25:23,664 | INFO     | cat /etc/os-release:
[2026-01-26 13:26:23] NAME="CentOS Linux"
[2026-01-26 13:26:23] VERSION="7 (Core)"
[2026-01-26 13:26:23] ID="centos"
[2026-01-26 13:26:23] ID_LIKE="rhel fedora"
[2026-01-26 13:26:23] VERSION_ID="7"
[2026-01-26 13:26:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 13:26:23] ANSI_COLOR="0;31"
[2026-01-26 13:26:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 13:26:23] HOME_URL="https://www.centos.org/"
[2026-01-26 13:26:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 13:26:23] 
[2026-01-26 13:26:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 13:26:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 13:26:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 13:26:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 13:26:23] 
[2026-01-26 13:26:23] 2026-01-26 13:25:23,664 | INFO     | **************************************
[2026-01-26 13:26:23] 2026-01-26 13:25:24,170 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/1
[2026-01-26 13:26:23] 2026-01-26 13:25:24,196 | INFO     | sufficient remaining disk space (79327920128 B)
[2026-01-26 13:26:23] 2026-01-26 13:25:24,196 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 13:26:23] 2026-01-26 13:25:24,197 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 13:26:23] 2026-01-26 13:25:24,197 | INFO     | update_server=False
[2026-01-26 13:26:23] 2026-01-26 13:25:24,197 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 13:26:23] 2026-01-26 13:25:24,200 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 13:26:23] 2026-01-26 13:25:24,611 | WARNING  | process 620601 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 13:26:23] 2026-01-26 13:25:24,890 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 13:26:23] 2026-01-26 13:25:24,891 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 13:26:23] 2026-01-26 13:25:24,891 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-26 13:26:23] 2026-01-26 13:25:24,892 | WARNING  | maxPSS not found in memory monitor output
[2026-01-26 13:26:23] 2026-01-26 13:25:24,892 | INFO     | skipping file size check of payload stdout file (/opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6983015878/payload.stdout) since it has not been created
[2026-01-26 13:26:23] 2026-01-26 13:25:24,892 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/1
[2026-01-26 13:26:23] 2026-01-26 13:25:24,919 | INFO     | sufficient remaining disk space (79327920128 B)
[2026-01-26 13:26:23] 2026-01-26 13:25:24,919 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-01-26 13:26:23] 2026-01-26 13:25:24,919 | INFO     | output file size check: skipping output file /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6983015878/HITS.48317931._001155.pool.root.1 since it does n
[2026-01-26 13:26:23] 2026-01-26 13:25:25,034 | INFO     | all payload control threads have been joined
[2026-01-26 13:26:23] 2026-01-26 13:25:25,151 | INFO     | all data control threads have been joined
[2026-01-26 13:26:23] 2026-01-26 13:25:25,207 | INFO     | [job] retrieve thread has finished
[2026-01-26 13:26:23] 2026-01-26 13:25:25,251 | INFO     | number of running child processes to parent process 620601: 1
[2026-01-26 13:26:23] 2026-01-26 13:25:25,251 | INFO     | maximum number of monitored processes: 6
[2026-01-26 13:26:23] 2026-01-26 13:25:25,251 | INFO     | aborting job monitoring since job object (job id=6983015878) has expired
[2026-01-26 13:26:23] 2026-01-26 13:25:25,251 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 13:26:23] 2026-01-26 13:25:25,251 | INFO     | will abort loop
[2026-01-26 13:26:23] 2026-01-26 13:25:25,474 | INFO     | [data] copytool_in thread has finished
[2026-01-26 13:26:23] 2026-01-26 13:25:25,637 | INFO     | all job control threads have been joined
[2026-01-26 13:26:23] 2026-01-26 13:25:25,971 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 13:26:23] 2026-01-26 13:25:26,039 | INFO     | [payload] control thread has finished
[2026-01-26 13:26:23] 2026-01-26 13:25:26,160 | INFO     | [data] control thread has finished
[2026-01-26 13:26:23] 2026-01-26 13:25:26,204 | INFO     | [data] copytool_out thread has finished
[2026-01-26 13:26:23] 2026-01-26 13:25:26,241 | INFO     | [job] validate thread has finished
[2026-01-26 13:26:23] 2026-01-26 13:25:26,258 | INFO     | [job] job monitor thread has finished
[2026-01-26 13:26:23] 2026-01-26 13:25:26,526 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 13:26:23] 2026-01-26 13:25:26,527 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 13:26:23] 2026-01-26 13:25:26,542 | INFO     | [payload] validate_post thread has finished
[2026-01-26 13:26:23] 2026-01-26 13:25:26,543 | INFO     | [payload] failed_post thread has finished
[2026-01-26 13:26:23] 2026-01-26 13:25:26,642 | INFO     | [job] control thread has finished
[2026-01-26 13:26:23] 2026-01-26 13:25:26,654 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 13:26:23] 2026-01-26 13:25:26,986 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 13:26:23] 2026-01-26 13:25:26,997 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 13:26:23] 2026-01-26 13:25:28,002 | INFO     | [job] queue monitor thread has finished
[2026-01-26 13:26:23] 2026-01-26 13:25:31,000 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 13:26:23] 2026-01-26 13:25:55,263 | INFO     | PID=615995 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-26 13:26:23] 2026-01-26 13:25:55,263 | INFO     | .. there are 4 such processes running
[2026-01-26 13:26:23] 2026-01-26 13:25:55,264 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 13:26:23] 2026-01-26 13:25:55,264 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 13:26:23] 2026-01-26 13:25:55,264 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 13:26:23] 2026-01-26 13:26:16,035 | INFO     | [monitor] cgroup control has ended
[2026-01-26 13:26:23] 2026-01-26 13:26:17,883 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 137584368518976)>', '<ExcThread(monitor, started 137583858259712)>']
[2026-01-26 13:26:23] 2026-01-26 13:26:18,380 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 13:26:23] 2026-01-26 13:26:18,381 | INFO     | [monitor] control thread has ended
[2026-01-26 13:26:23] 2026-01-26 13:26:22,908 | INFO     | all workflow threads have been joined
[2026-01-26 13:26:23] 2026-01-26 13:26:22,909 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 13:26:23] 2026-01-26 13:26:22,909 | INFO     | traces error code: 0
[2026-01-26 13:26:23] 2026-01-26 13:26:22,909 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 13:26:23] 2026-01-26 13:26:23,144 [wrapper] ==== pilot stdout END ====
[2026-01-26 13:26:23] 2026-01-26 13:26:23,150 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 13:26:23] 2026-01-26 13:26:23,156 [wrapper] pilotpid: 615995
[2026-01-26 13:26:23] 2026-01-26 13:26:23,163 [wrapper] Pilot exit status: 0
[2026-01-26 13:26:23] 2026-01-26 13:26:23,185 [wrapper] pandaids: 6983015878
[2026-01-26 13:26:23] 2026-01-26 13:26:23,257 [wrapper] cleanup supervisor_pilot  665809 615996
[2026-01-26 13:26:23] 2026-01-26 13:26:23,263 [wrapper] Test setup, not cleaning
[2026-01-26 13:26:23] 2026-01-26 13:26:23,271 [wrapper] apfmon messages muted
[2026-01-26 13:26:23] 2026-01-26 13:26:23,279 [wrapper] ==== wrapper stdout END ====
[2026-01-26 13:26:23] 2026-01-26 13:26:23,285 [wrapper] ==== wrapper stderr END ====
[2026-01-26 13:26:23]  *** Error codes and diagnostics ***
[2026-01-26 13:26:23]     "exeErrorCode": 0,
[2026-01-26 13:26:23]     "exeErrorDiag": "",
[2026-01-26 13:26:23]     "pilotErrorCode": 0,
[2026-01-26 13:26:23]     "pilotErrorDiag": "",
[2026-01-26 13:26:23]  *** Listing of results directory ***
[2026-01-26 13:26:23] total 665176
[2026-01-26 13:26:23] -rw-r--r-- 1 boinc boinc    584422 Jan 25 14:11 pilot3.tar.gz
[2026-01-26 13:26:23] -rw-r--r-- 1 boinc boinc      5111 Jan 25 14:11 queuedata.json
[2026-01-26 13:26:23] -rwx------ 1 boinc boinc     36322 Jan 25 14:12 runpilot2-wrapper.sh
[2026-01-26 13:26:23] -rw-rw-r-- 1 boinc boinc       100 Jan 26 11:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 13:26:23] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 11:32 run_atlas
[2026-01-26 13:26:23] -rw-rw-r-- 1 boinc boinc       105 Jan 26 11:32 job.xml
[2026-01-26 13:26:23] -rw-r--r-- 2 boinc boinc 493648381 Jan 26 11:32 EVNT.48317929._000023.pool.root.1
[2026-01-26 13:26:23] -rw-r--r-- 2 boinc boinc     15845 Jan 26 11:32 start_atlas.sh
[2026-01-26 13:26:23] drwxrwx--x 2 boinc boinc      4096 Jan 26 11:32 shared
[2026-01-26 13:26:23] -rw-r--r-- 2 boinc boinc    597758 Jan 26 11:32 input.tar.gz
[2026-01-26 13:26:23] -rw-rw-r-- 1 boinc boinc         0 Jan 26 11:32 boinc_setup_complete
[2026-01-26 13:26:23] -rw-rw-r-- 1 boinc boinc      6153 Jan 26 11:32 init_data.xml
[2026-01-26 13:26:23] -rw-rw-r-- 1 boinc boinc         0 Jan 26 11:32 boinc_lockfile
[2026-01-26 13:26:23] -rw-rw-r-- 1 boinc boinc      2508 Jan 26 11:32 pandaJob.out
[2026-01-26 13:26:23] -rw------- 1 boinc boinc   1002189 Jan 26 11:32 agis_schedconf.cvmfs.json
[2026-01-26 13:26:23] -rw------- 1 boinc boinc   1516246 Jan 26 11:33 agis_ddmendpoints.agis.ALL.json
[2026-01-26 13:26:23] -rw------- 1 boinc boinc       430 Jan 26 11:33 workernode_map.json
[2026-01-26 13:26:23] drwx------ 5 boinc boinc      4096 Jan 26 11:33 pilot3
[2026-01-26 13:26:23] -rw------- 1 boinc boinc 180679583 Jan 26 13:24 HITS.48317931._001155.pool.root.1
[2026-01-26 13:26:23] -rw-rw-r-- 1 boinc boinc       531 Jan 26 13:24 boinc_task_state.xml
[2026-01-26 13:26:23] -rw------- 1 boinc boinc        95 Jan 26 13:25 pilot_heartbeat.json
[2026-01-26 13:26:23] -rw------- 1 boinc boinc      1031 Jan 26 13:25 memory_monitor_summary.json
[2026-01-26 13:26:23] -rw------- 1 boinc boinc    448638 Jan 26 13:25 log.48317931._001155.job.log.tgz.1
[2026-01-26 13:26:23] -rw------- 1 boinc boinc      6337 Jan 26 13:25 heartbeat.json
[2026-01-26 13:26:23] -rw-rw-r-- 1 boinc boinc      8192 Jan 26 13:26 boinc_mmap_file
[2026-01-26 13:26:23] -rw-rw-r-- 1 boinc boinc        27 Jan 26 13:26 wrapper_checkpoint.txt
[2026-01-26 13:26:23] -rw------- 1 boinc boinc      6439 Jan 26 13:26 pilotlog.txt
[2026-01-26 13:26:23] -rw------- 1 boinc boinc    990390 Jan 26 13:26 log.48317931._001155.job.log.1
[2026-01-26 13:26:23] -rw------- 1 boinc boinc       357 Jan 26 13:26 output.list
[2026-01-26 13:26:23] -rw-rw-r-- 1 boinc boinc       620 Jan 26 13:26 runtime_log
[2026-01-26 13:26:23] -rw------- 1 boinc boinc   1454080 Jan 26 13:26 result.tar.gz
[2026-01-26 13:26:23] -rw-rw-r-- 1 boinc boinc      9171 Jan 26 13:26 runtime_log.err
[2026-01-26 13:26:23] -rw------- 1 boinc boinc       653 Jan 26 13:26 QuNNDm91F48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPj7KDm6bNpFn.diag
[2026-01-26 13:26:23] -rw-rw-r-- 1 boinc boinc     21307 Jan 26 13:26 stderr.txt
[2026-01-26 13:26:23] HITS file was successfully produced:
[2026-01-26 13:26:23] -rw------- 1 boinc boinc 180679583 Jan 26 13:24 shared/HITS.pool.root.1
[2026-01-26 13:26:23]  *** Contents of shared directory: ***
[2026-01-26 13:26:23] total 660556
[2026-01-26 13:26:23] -rw-r--r-- 2 boinc boinc 493648381 Jan 26 11:32 ATLAS.root_0
[2026-01-26 13:26:23] -rw-r--r-- 2 boinc boinc     15845 Jan 26 11:32 start_atlas.sh
[2026-01-26 13:26:23] -rw-r--r-- 2 boinc boinc    597758 Jan 26 11:32 input.tar.gz
[2026-01-26 13:26:23] -rw------- 1 boinc boinc 180679583 Jan 26 13:24 HITS.pool.root.1
[2026-01-26 13:26:23] -rw------- 1 boinc boinc   1454080 Jan 26 13:26 result.tar.gz
13:26:24 (611822): run_atlas exited; CPU time 54199.061463
13:26:24 (611822): called boinc_finish(0)

</stderr_txt>
]]>

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