Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:48:21 (1625213): wrapper (7.7.26015): starting
03:48:21 (1625213): wrapper: running run_atlas (--nthreads 2)
[2026-01-26 03:48:21] Arguments: --nthreads 2
[2026-01-26 03:48:21] Threads: 2
[2026-01-26 03:48:21] Checking for CVMFS
[2026-01-26 03:48:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 03:48:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 03:48:22] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 03:48:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 03:48:22] 2.9.2.0 770802 7583 67308 155528 2 50 21069002 36864000 0 130560 0 2543542 99.983 229424 6441 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 03:48:22] CVMFS is ok
[2026-01-26 03:48:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 03:48:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 03:48:22] Further information can be found at the LHC@home message board.
[2026-01-26 03:48:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 03:48:22] Checking for apptainer binary...
[2026-01-26 03:48:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 03:48:22] Running /usr/bin/apptainer --version
[2026-01-26 03:48:22] apptainer version 1.4.1-1.1
[2026-01-26 03:48:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 03:48:22] thA337
[2026-01-26 03:48:22] apptainer works
[2026-01-26 03:48:22] Set ATHENA_PROC_NUMBER=2
[2026-01-26 03:48:22] Set ATHENA_CORE_NUMBER=2
[2026-01-26 03:48:22] Starting ATLAS job with PandaID=6982916454
[2026-01-26 03:48:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 05:50:02]  *** The last 200 lines of the pilot log: ***
[2026-01-26 05:50:02] 2026-01-26 04:49:31,784 | INFO     | zombie collector waiting for pid 1633645
[2026-01-26 05:50:02] 2026-01-26 04:49:31,784 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 05:50:02] 2026-01-26 04:49:31,784 | INFO     | collected zombie processes
[2026-01-26 05:50:02] 2026-01-26 04:49:31,784 | INFO     | will attempt to kill all subprocesses of pid=1633645
[2026-01-26 05:50:02] 2026-01-26 04:49:31,815 | INFO     | process IDs to be killed: [1633645] (in reverse order)
[2026-01-26 05:50:02] 2026-01-26 04:49:31,836 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 05:50:02] 2026-01-26 04:49:31,836 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 05:50:02] 2026-01-26 04:49:31,836 | INFO     | did not find any defunct processes belonging to 1633645
[2026-01-26 05:50:02] 2026-01-26 04:49:31,837 | INFO     | did not find any defunct processes belonging to 1633645
[2026-01-26 05:50:02] 2026-01-26 04:49:31,837 | INFO     | ready for new job
[2026-01-26 05:50:02] 2026-01-26 04:49:31,837 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 05:50:02] 2026-01-26 04:49:31,838 | INFO     | **************************************
[2026-01-26 05:50:02] 2026-01-26 04:49:31,838 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 05:50:02] 2026-01-26 04:49:31,838 | INFO     | **************************************
[2026-01-26 05:50:02] 2026-01-26 04:49:31,838 | INFO     | 
[2026-01-26 05:50:02] 2026-01-26 04:49:31,838 | INFO     | architecture information:
[2026-01-26 05:50:02] 2026-01-26 04:49:31,838 | INFO     | executing command: cat /etc/os-release
[2026-01-26 05:50:02] 2026-01-26 04:49:31,847 | INFO     | cat /etc/os-release:
[2026-01-26 05:50:02] NAME="CentOS Linux"
[2026-01-26 05:50:02] VERSION="7 (Core)"
[2026-01-26 05:50:02] ID="centos"
[2026-01-26 05:50:02] ID_LIKE="rhel fedora"
[2026-01-26 05:50:02] VERSION_ID="7"
[2026-01-26 05:50:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 05:50:02] ANSI_COLOR="0;31"
[2026-01-26 05:50:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 05:50:02] HOME_URL="https://www.centos.org/"
[2026-01-26 05:50:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 05:50:02] 
[2026-01-26 05:50:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 05:50:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 05:50:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 05:50:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 05:50:02] 
[2026-01-26 05:50:02] 2026-01-26 04:49:31,847 | INFO     | **************************************
[2026-01-26 05:50:02] 2026-01-26 04:49:32,350 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 05:50:02] 2026-01-26 04:49:32,362 | INFO     | sufficient remaining disk space (488514781184 B)
[2026-01-26 05:50:02] 2026-01-26 04:49:32,362 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 05:50:02] 2026-01-26 04:49:32,362 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 05:50:02] 2026-01-26 04:49:32,362 | INFO     | update_server=False
[2026-01-26 05:50:02] 2026-01-26 04:49:32,362 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 05:50:02] 2026-01-26 04:49:32,363 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 05:50:02] 2026-01-26 04:49:32,814 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-26 05:50:02] 2026-01-26 04:49:32,815 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-26 05:50:02] 2026-01-26 04:49:32,815 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 05:50:02] 2026-01-26 04:49:32,815 | INFO     | will abort loop
[2026-01-26 05:50:02] 2026-01-26 04:49:32,915 | INFO     | all data control threads have been joined
[2026-01-26 05:50:02] 2026-01-26 04:49:33,025 | INFO     | all payload control threads have been joined
[2026-01-26 05:50:02] 2026-01-26 04:49:33,368 | INFO     | [job] retrieve thread has finished
[2026-01-26 05:50:02] 2026-01-26 04:49:33,497 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 05:50:02] 2026-01-26 04:49:33,528 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 05:50:02] 2026-01-26 04:49:33,657 | INFO     | [data] copytool_in thread has finished
[2026-01-26 05:50:02] 2026-01-26 04:49:33,769 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 05:50:02] 2026-01-26 04:49:33,803 | INFO     | all job control threads have been joined
[2026-01-26 05:50:02] 2026-01-26 04:49:33,821 | INFO     | [job] job monitor thread has finished
[2026-01-26 05:50:02] 2026-01-26 04:49:33,921 | INFO     | [data] control thread has finished
[2026-01-26 05:50:02] 2026-01-26 04:49:33,988 | INFO     | [payload] failed_post thread has finished
[2026-01-26 05:50:02] 2026-01-26 04:49:34,031 | INFO     | [payload] control thread has finished
[2026-01-26 05:50:02] 2026-01-26 04:49:34,369 | INFO     | [data] copytool_out thread has finished
[2026-01-26 05:50:02] 2026-01-26 04:49:34,506 | INFO     | [payload] validate_post thread has finished
[2026-01-26 05:50:02] 2026-01-26 04:49:34,589 | INFO     | [job] validate thread has finished
[2026-01-26 05:50:02] 2026-01-26 04:49:34,809 | INFO     | [job] control thread has finished
[2026-01-26 05:50:02] 2026-01-26 04:49:35,355 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 05:50:02] 2026-01-26 04:49:35,706 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 05:50:02] 2026-01-26 04:49:36,362 | INFO     | [job] queue monitor thread has finished
[2026-01-26 05:50:02] 2026-01-26 04:49:39,714 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 05:50:02] 2026-01-26 04:49:42,629 | INFO     | job.realtimelogging is not enabled
[2026-01-26 05:50:02] 2026-01-26 04:49:43,635 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 05:50:02] 2026-01-26 04:49:52,194 | INFO     | [monitor] cgroup control has ended
[2026-01-26 05:50:02] 2026-01-26 04:49:53,304 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140208568252224)>', '<ExcThread(monitor, started 140207730980608)>']
[2026-01-26 05:50:02] 2026-01-26 04:49:58,316 | INFO     | all workflow threads have been joined
[2026-01-26 05:50:02] 2026-01-26 04:49:58,317 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 05:50:02] 2026-01-26 04:49:58,317 | INFO     | traces error code: 0
[2026-01-26 05:50:02] 2026-01-26 04:49:58,317 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 05:50:02] 2026-01-26 04:50:02,880 | INFO     | PID=1629238 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 05:50:02] 2026-01-26 04:50:02,880 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 05:50:02] 2026-01-26 04:50:02,880 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 05:50:02] 2026-01-26 04:50:02,880 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 05:50:02] 2026-01-26 04:50:02,880 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 05:50:02] 2026-01-26 04:50:02,880 | CRITICAL | thread 'MainThread' is not alive
[2026-01-26 05:50:02] 2026-01-26 04:50:02,880 | INFO     | [monitor] control thread has ended
[2026-01-26 05:50:02] 2026-01-26 04:50:02,918 [wrapper] ==== pilot stdout END ====
[2026-01-26 05:50:02] 2026-01-26 04:50:02,921 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 05:50:02] 2026-01-26 04:50:02,924 [wrapper] pilotpid: 1629238
[2026-01-26 05:50:02] 2026-01-26 04:50:02,925 [wrapper] Pilot exit status: 0
[2026-01-26 05:50:02] 2026-01-26 04:50:02,931 [wrapper] pandaids: 6982916454
[2026-01-26 05:50:02] 2026-01-26 04:50:02,944 [wrapper] cleanup supervisor_pilot 1638528 1629239
[2026-01-26 05:50:02] 2026-01-26 04:50:02,946 [wrapper] Test setup, not cleaning
[2026-01-26 05:50:02] 2026-01-26 04:50:02,948 [wrapper] apfmon messages muted
[2026-01-26 05:50:02] 2026-01-26 04:50:02,950 [wrapper] ==== wrapper stdout END ====
[2026-01-26 05:50:02] 2026-01-26 04:50:02,952 [wrapper] ==== wrapper stderr END ====
[2026-01-26 05:50:02]  *** Error codes and diagnostics ***
[2026-01-26 05:50:02]     "exeErrorCode": 0,
[2026-01-26 05:50:02]     "exeErrorDiag": "",
[2026-01-26 05:50:02]     "pilotErrorCode": 0,
[2026-01-26 05:50:02]     "pilotErrorDiag": "",
[2026-01-26 05:50:02]  *** Listing of results directory ***
[2026-01-26 05:50:03] total 669664
[2026-01-26 05:50:03] -rw-r--r-- 1 boinc boinc      5111 Jan 25 10:42 queuedata.json
[2026-01-26 05:50:03] -rw-r--r-- 1 boinc boinc    584422 Jan 25 10:42 pilot3.tar.gz
[2026-01-26 05:50:03] -rwx------ 1 boinc boinc     36322 Jan 25 10:42 runpilot2-wrapper.sh
[2026-01-26 05:50:03] -rw-r--r-- 1 boinc boinc       100 Jan 26 03:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 05:50:03] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 03:48 run_atlas
[2026-01-26 05:50:03] -rw-r--r-- 1 boinc boinc       105 Jan 26 03:48 job.xml
[2026-01-26 05:50:03] -rw-r--r-- 2 boinc boinc 494286372 Jan 26 03:48 EVNT.48310721._000142.pool.root.1
[2026-01-26 05:50:03] -rw-r--r-- 2 boinc boinc    597753 Jan 26 03:48 input.tar.gz
[2026-01-26 05:50:03] -rw-r--r-- 2 boinc boinc     15845 Jan 26 03:48 start_atlas.sh
[2026-01-26 05:50:03] drwxrwx--x 2 boinc boinc      4096 Jan 26 03:48 shared
[2026-01-26 05:50:03] -rw-r--r-- 1 boinc boinc         0 Jan 26 03:48 boinc_setup_complete
[2026-01-26 05:50:03] -rw-r--r-- 1 boinc boinc      6206 Jan 26 03:48 init_data.xml
[2026-01-26 05:50:03] -rw-r--r-- 1 boinc boinc         0 Jan 26 03:48 boinc_lockfile
[2026-01-26 05:50:03] -rw-r--r-- 1 boinc boinc      2534 Jan 26 03:48 pandaJob.out
[2026-01-26 05:50:03] -rw------- 1 boinc boinc   1004246 Jan 26 03:48 agis_schedconf.cvmfs.json
[2026-01-26 05:50:03] -rw------- 1 boinc boinc   1516246 Jan 26 03:48 agis_ddmendpoints.agis.ALL.json
[2026-01-26 05:50:03] -rw------- 1 boinc boinc       425 Jan 26 03:48 workernode_map.json
[2026-01-26 05:50:03] drwx------ 5 boinc boinc      4096 Jan 26 03:48 pilot3
[2026-01-26 05:50:03] -rw------- 1 boinc boinc 184809813 Jan 26 05:49 HITS.48310724._007098.pool.root.1
[2026-01-26 05:50:03] -rw------- 1 boinc boinc        95 Jan 26 05:49 pilot_heartbeat.json
[2026-01-26 05:50:03] -rw-r--r-- 1 boinc boinc       530 Jan 26 05:49 boinc_task_state.xml
[2026-01-26 05:50:03] -rw------- 1 boinc boinc      1013 Jan 26 05:49 memory_monitor_summary.json
[2026-01-26 05:50:03] -rw------- 1 boinc boinc    309202 Jan 26 05:49 log.48310724._007098.job.log.tgz.1
[2026-01-26 05:50:03] -rw------- 1 boinc boinc      6294 Jan 26 05:49 heartbeat.json
[2026-01-26 05:50:03] -rw-r--r-- 1 boinc boinc      8192 Jan 26 05:49 boinc_mmap_file
[2026-01-26 05:50:03] -rw-r--r-- 1 boinc boinc        27 Jan 26 05:49 wrapper_checkpoint.txt
[2026-01-26 05:50:03] -rw------- 1 boinc boinc       817 Jan 26 05:50 pilotlog.txt
[2026-01-26 05:50:03] -rw------- 1 boinc boinc   1048594 Jan 26 05:50 log.48310724._007098.job.log.1
[2026-01-26 05:50:03] -rw------- 1 boinc boinc       357 Jan 26 05:50 output.list
[2026-01-26 05:50:03] -rw-r--r-- 1 boinc boinc       620 Jan 26 05:50 runtime_log
[2026-01-26 05:50:03] -rw------- 1 boinc boinc   1372160 Jan 26 05:50 result.tar.gz
[2026-01-26 05:50:03] -rw-r--r-- 1 boinc boinc      8896 Jan 26 05:50 runtime_log.err
[2026-01-26 05:50:03] -rw------- 1 boinc boinc       657 Jan 26 05:50 FxmLDmsoB48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWW0KDmyFaedn.diag
[2026-01-26 05:50:03] -rw-r--r-- 1 boinc boinc     10926 Jan 26 05:50 stderr.txt
[2026-01-26 05:50:03] HITS file was successfully produced:
[2026-01-26 05:50:03] -rw------- 1 boinc boinc 184809813 Jan 26 05:49 shared/HITS.pool.root.1
[2026-01-26 05:50:03]  *** Contents of shared directory: ***
[2026-01-26 05:50:03] total 665132
[2026-01-26 05:50:03] -rw-r--r-- 2 boinc boinc 494286372 Jan 26 03:48 ATLAS.root_0
[2026-01-26 05:50:03] -rw-r--r-- 2 boinc boinc    597753 Jan 26 03:48 input.tar.gz
[2026-01-26 05:50:03] -rw-r--r-- 2 boinc boinc     15845 Jan 26 03:48 start_atlas.sh
[2026-01-26 05:50:03] -rw------- 1 boinc boinc 184809813 Jan 26 05:49 HITS.pool.root.1
[2026-01-26 05:50:03] -rw------- 1 boinc boinc   1372160 Jan 26 05:50 result.tar.gz
05:50:04 (1625213): run_atlas exited; CPU time 14086.740666
05:50:04 (1625213): called boinc_finish(0)

</stderr_txt>
]]>

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