Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:27:00 (1289653): wrapper (7.7.26015): starting
16:27:00 (1289653): wrapper: running run_atlas (--nthreads 4)
[2026-01-26 16:27:00] Arguments: --nthreads 4
[2026-01-26 16:27:00] Threads: 4
[2026-01-26 16:27:00] Checking for CVMFS
[2026-01-26 16:27:00] No cvmfs_config command found, will try listing directly
[2026-01-26 16:27:00] CVMFS is ok
[2026-01-26 16:27:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 16:27:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 16:27:00] Further information can be found at the LHC@home message board.
[2026-01-26 16:27:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 16:27:00] Checking for apptainer binary...
[2026-01-26 16:27:00] which: no apptainer in ((null))
[2026-01-26 16:27:00] apptainer is not installed, using version from CVMFS
[2026-01-26 16:27:00] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 16:27:01] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot104/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2026-01-26 16:27:01] apptainer works
[2026-01-26 16:27:01] Set ATHENA_PROC_NUMBER=4
[2026-01-26 16:27:01] Set ATHENA_CORE_NUMBER=4
[2026-01-26 16:27:01] Starting ATLAS job with PandaID=6982915502
[2026-01-26 16:27:01] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot104/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 19:35:31]  *** The last 200 lines of the pilot log: ***
[2026-01-26 19:35:31] 2026-01-26 18:29:51,004 | INFO     | preparing for final server update for job 6982915502 in state='finished'
[2026-01-26 19:35:31] 2026-01-26 18:29:51,004 | INFO     | reading metadata from: /scratch/boinc/var/slot104/slots/0/PanDA_Pilot-6982915502/jobReport.json
[2026-01-26 19:35:31] 2026-01-26 18:29:51,007 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot104/slots/0/workernode_map.json
[2026-01-26 19:35:31] 2026-01-26 18:29:51,007 | INFO     | this job has now completed (state=finished)
[2026-01-26 19:35:31] 2026-01-26 18:29:51,007 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 19:35:31] 2026-01-26 18:29:51,007 | INFO     | log transfer has been attempted: DONE
[2026-01-26 19:35:31] 2026-01-26 18:29:51,007 | INFO     | job 6982915502 has finished - writing final server update
[2026-01-26 19:35:31] 2026-01-26 18:29:51,008 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1839028/.job.ad'
[2026-01-26 19:35:31] 2026-01-26 18:29:51,008 | INFO     | total number of processed events: 400 (read)
[2026-01-26 19:35:31] 2026-01-26 18:29:51,030 | INFO     | using path: /scratch/boinc/var/slot104/slots/0/PanDA_Pilot-6982915502/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 19:35:31] 2026-01-26 18:29:51,033 | INFO     | extracted standard info from prmon json
[2026-01-26 19:35:31] 2026-01-26 18:29:51,033 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 19:35:31] 2026-01-26 18:29:51,033 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 19:35:31] 2026-01-26 18:29:51,034 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 19:35:31] 2026-01-26 18:29:51,034 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 19:35:31] 2026-01-26 18:29:51,038 | INFO     | fitting pss+swap vs Time
[2026-01-26 19:35:31] 2026-01-26 18:29:51,038 | INFO     | sum of square deviations: 1778377530.0
[2026-01-26 19:35:31] 2026-01-26 18:29:51,040 | INFO     | sum of deviations: -18998502338.000004
[2026-01-26 19:35:31] 2026-01-26 18:29:51,040 | INFO     | mean x: 1769446699.0
[2026-01-26 19:35:31] 2026-01-26 18:29:51,040 | INFO     | mean y: 2365553.0446927375
[2026-01-26 19:35:31] 2026-01-26 18:29:51,040 | INFO     | intersect: 18905459345.46226
[2026-01-26 19:35:31] 2026-01-26 18:29:51,040 | INFO     | chi2: 1.2816281263187943
[2026-01-26 19:35:31] 2026-01-26 18:29:51,041 | INFO     | sum of square deviations: 1633472487.5
[2026-01-26 19:35:31] 2026-01-26 18:29:51,042 | INFO     | sum of deviations: -18186301246.0
[2026-01-26 19:35:31] 2026-01-26 18:29:51,042 | INFO     | mean x: 1769446546.5
[2026-01-26 19:35:31] 2026-01-26 18:29:51,042 | INFO     | mean y: 2366408.0344827585
[2026-01-26 19:35:31] 2026-01-26 18:29:51,042 | INFO     | intersect: 19702537778.89961
[2026-01-26 19:35:31] 2026-01-26 18:29:51,042 | INFO     | chi2: 1.2792819763944718
[2026-01-26 19:35:31] 2026-01-26 18:29:51,042 | INFO     | current chi2=1.2792819763944718 (change=0.18306011518811552 %)
[2026-01-26 19:35:31] 2026-01-26 18:29:51,042 | INFO     | right removable region: 173
[2026-01-26 19:35:31] 2026-01-26 18:29:51,043 | INFO     | sum of square deviations: 1633472487.5
[2026-01-26 19:35:31] 2026-01-26 18:29:51,044 | INFO     | sum of deviations: -35333859478.0
[2026-01-26 19:35:31] 2026-01-26 18:29:51,044 | INFO     | mean x: 1769446851.5
[2026-01-26 19:35:31] 2026-01-26 18:29:51,044 | INFO     | mean y: 2382360.8735632184
[2026-01-26 19:35:31] 2026-01-26 18:29:51,044 | INFO     | intersect: 38277521295.33972
[2026-01-26 19:35:31] 2026-01-26 18:29:51,044 | INFO     | chi2: 0.11531486614476111
[2026-01-26 19:35:31] 2026-01-26 18:29:51,045 | INFO     | current chi2=0.11531486614476111 (change=91.0024707029504 %)
[2026-01-26 19:35:31] 2026-01-26 18:29:51,045 | INFO     | sum of square deviations: 1496660620.0
[2026-01-26 19:35:31] 2026-01-26 18:29:51,046 | INFO     | sum of deviations: -28634452127.999996
[2026-01-26 19:35:31] 2026-01-26 18:29:51,046 | INFO     | mean x: 1769447004.0
[2026-01-26 19:35:31] 2026-01-26 18:29:51,046 | INFO     | mean y: 2374924.7396449703
[2026-01-26 19:35:31] 2026-01-26 18:29:51,046 | INFO     | intersect: 33855838329.870876
[2026-01-26 19:35:31] 2026-01-26 18:29:51,046 | INFO     | chi2: 0.09204854834423909
[2026-01-26 19:35:31] 2026-01-26 18:29:51,047 | INFO     | current chi2=0.09204854834423909 (change=20.176338557523472 %)
[2026-01-26 19:35:31] 2026-01-26 18:29:51,047 | INFO     | left removable region: 20
[2026-01-26 19:35:31] 2026-01-26 18:29:51,047 | INFO     | sum of square deviations: 1110539892.0
[2026-01-26 19:35:31] 2026-01-26 18:29:51,048 | INFO     | sum of deviations: -20269991827.999996
[2026-01-26 19:35:31] 2026-01-26 18:29:51,048 | INFO     | mean x: 1769447126.0
[2026-01-26 19:35:31] 2026-01-26 18:29:51,048 | INFO     | mean y: 2366955.8169934643
[2026-01-26 19:35:31] 2026-01-26 18:29:51,048 | INFO     | intersect: 32298981460.59165
[2026-01-26 19:35:31] 2026-01-26 18:29:51,048 | INFO     | chi2: 0.08317581633169037
[2026-01-26 19:35:31] 2026-01-26 18:29:51,048 | INFO     | current memory leak: -18.25 B/s (using 153 data points, chi2=0.08)
[2026-01-26 19:35:31] 2026-01-26 18:29:51,049 | INFO     | could have reported an average CPU frequency of 2722 MHz (10 samples)
[2026-01-26 19:35:31] 2026-01-26 18:29:51,049 | INFO     | ..............................
[2026-01-26 19:35:31] 2026-01-26 18:29:51,049 | INFO     | . Timing measurements:
[2026-01-26 19:35:31] 2026-01-26 18:29:51,049 | INFO     | . get job = 0 s
[2026-01-26 19:35:31] 2026-01-26 18:29:51,049 | INFO     | . initial setup = 8 s
[2026-01-26 19:35:31] 2026-01-26 18:29:51,049 | INFO     | . payload setup = 8 s
[2026-01-26 19:35:31] 2026-01-26 18:29:51,049 | INFO     | . stage-in = 0 s
[2026-01-26 19:35:31] 2026-01-26 18:29:51,050 | INFO     | . payload execution = 10919 s
[2026-01-26 19:35:31] 2026-01-26 18:29:51,050 | INFO     | . stage-out = 1 s
[2026-01-26 19:35:31] 2026-01-26 18:29:51,050 | INFO     | . log creation = 0 s
[2026-01-26 19:35:31] 2026-01-26 18:29:51,050 | INFO     | ..............................
[2026-01-26 19:35:31] 2026-01-26 18:29:51,149 | INFO     | 
[2026-01-26 19:35:31] 2026-01-26 18:29:51,150 | INFO     | job summary report
[2026-01-26 19:35:31] 2026-01-26 18:29:51,150 | INFO     | --------------------------------------------------
[2026-01-26 19:35:31] 2026-01-26 18:29:51,150 | INFO     | PanDA job id: 6982915502
[2026-01-26 19:35:31] 2026-01-26 18:29:51,150 | INFO     | task id: 48318737
[2026-01-26 19:35:31] 2026-01-26 18:29:51,150 | INFO     | errors: (none)
[2026-01-26 19:35:31] 2026-01-26 18:29:51,150 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 19:35:31] 2026-01-26 18:29:51,150 | INFO     | pilot state: finished 
[2026-01-26 19:35:31] 2026-01-26 18:29:51,150 | INFO     | transexitcode: 0
[2026-01-26 19:35:31] 2026-01-26 18:29:51,151 | INFO     | exeerrorcode: 0
[2026-01-26 19:35:31] 2026-01-26 18:29:51,151 | INFO     | exeerrordiag: 
[2026-01-26 19:35:31] 2026-01-26 18:29:51,151 | INFO     | exitcode: 0
[2026-01-26 19:35:31] 2026-01-26 18:29:51,151 | INFO     | exitmsg: OK
[2026-01-26 19:35:31] 2026-01-26 18:29:51,151 | INFO     | cpuconsumptiontime: 41714 s
[2026-01-26 19:35:31] 2026-01-26 18:29:51,151 | INFO     | nevents: 400
[2026-01-26 19:35:31] 2026-01-26 18:29:51,151 | INFO     | neventsw: 0
[2026-01-26 19:35:31] 2026-01-26 18:29:51,151 | INFO     | pid: 1299844
[2026-01-26 19:35:31] 2026-01-26 18:29:51,151 | INFO     | pgrp: 1299844
[2026-01-26 19:35:31] 2026-01-26 18:29:51,151 | INFO     | corecount: 4
[2026-01-26 19:35:31] 2026-01-26 18:29:51,151 | INFO     | event service: False
[2026-01-26 19:35:31] 2026-01-26 18:29:51,151 | INFO     | sizes: {0: 2284104, 1: 2284366, 11: 2284394, 10932: 2313961, 10934: 2322983, 10936: 2323361}
[2026-01-26 19:35:31] 2026-01-26 18:29:51,152 | INFO     | --------------------------------------------------
[2026-01-26 19:35:31] 2026-01-26 18:29:51,152 | INFO     | 
[2026-01-26 19:35:31] 2026-01-26 18:29:51,152 | INFO     | executing command: ls -lF /scratch/boinc/var/slot104/slots/0
[2026-01-26 19:35:31] 2026-01-26 18:29:51,183 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 19:35:31] 2026-01-26 18:29:51,184 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 19:35:31] 2026-01-26 18:29:51,184 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 19:35:31] 2026-01-26 18:29:51,184 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 19:35:31] 2026-01-26 18:29:51,184 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 19:35:31] 2026-01-26 18:29:51,184 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 19:35:31] 2026-01-26 18:29:51,184 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 19:35:31] 2026-01-26 18:29:51,184 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 19:35:31] 2026-01-26 18:29:51,184 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 19:35:31] 2026-01-26 18:29:51,184 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 19:35:31] 2026-01-26 18:29:51,185 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 19:35:31] 2026-01-26 18:29:51,185 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 19:35:31] 2026-01-26 18:29:51,185 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 19:35:31] 2026-01-26 18:29:51,185 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 19:35:31] 2026-01-26 18:29:51,185 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 19:35:31] 2026-01-26 18:29:51,185 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 19:35:31] 2026-01-26 18:29:51,185 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 19:35:31] 2026-01-26 18:29:51,185 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 19:35:31] 2026-01-26 18:29:51,185 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 19:35:31] 2026-01-26 18:29:51,185 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 19:35:31] 2026-01-26 18:29:51,186 | INFO     | job 6982915502 has completed (purged errors)
[2026-01-26 19:35:31] 2026-01-26 18:29:51,186 | INFO     | overall cleanup function is called
[2026-01-26 19:35:31] 2026-01-26 18:29:52,195 | INFO     | --- collectZombieJob: --- 10, [1299844]
[2026-01-26 19:35:31] 2026-01-26 18:29:52,195 | INFO     | zombie collector waiting for pid 1299844
[2026-01-26 19:35:31] 2026-01-26 18:29:52,196 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 19:35:31] 2026-01-26 18:29:52,196 | INFO     | collected zombie processes
[2026-01-26 19:35:31] 2026-01-26 18:29:52,196 | INFO     | will attempt to kill all subprocesses of pid=1299844
[2026-01-26 19:35:31] 2026-01-26 18:29:52,975 | INFO     | process IDs to be killed: [1299844] (in reverse order)
[2026-01-26 19:35:31] 2026-01-26 18:29:53,250 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 19:35:31] 2026-01-26 18:29:53,250 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 19:35:31] 2026-01-26 18:29:53,282 | INFO     | did not find any defunct processes belonging to 1299844
[2026-01-26 19:35:31] 2026-01-26 18:29:53,311 | INFO     | did not find any defunct processes belonging to 1299844
[2026-01-26 19:35:31] 2026-01-26 18:29:53,311 | INFO     | ready for new job
[2026-01-26 19:35:31] 2026-01-26 18:29:53,311 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 19:35:31] 2026-01-26 18:29:53,314 | INFO     | **************************************
[2026-01-26 19:35:31] 2026-01-26 18:29:53,314 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 19:35:31] 2026-01-26 18:29:53,314 | INFO     | **************************************
[2026-01-26 19:35:31] 2026-01-26 18:29:53,314 | INFO     | 
[2026-01-26 19:35:31] 2026-01-26 18:29:53,323 | INFO     | architecture information:
[2026-01-26 19:35:31] 2026-01-26 18:29:53,323 | INFO     | executing command: cat /etc/os-release
[2026-01-26 19:35:31] 2026-01-26 18:29:53,347 | INFO     | cat /etc/os-release:
[2026-01-26 19:35:31] NAME="CentOS Linux"
[2026-01-26 19:35:31] VERSION="7 (Core)"
[2026-01-26 19:35:31] ID="centos"
[2026-01-26 19:35:31] ID_LIKE="rhel fedora"
[2026-01-26 19:35:31] VERSION_ID="7"
[2026-01-26 19:35:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 19:35:31] ANSI_COLOR="0;31"
[2026-01-26 19:35:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 19:35:31] HOME_URL="https://www.centos.org/"
[2026-01-26 19:35:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 19:35:31] 
[2026-01-26 19:35:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 19:35:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 19:35:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 19:35:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 19:35:31] 
[2026-01-26 19:35:31] 2026-01-26 18:29:53,347 | INFO     | **************************************
[2026-01-26 19:35:31] 2026-01-26 18:29:53,850 | INFO     | executing command: df -mP /scratch/boinc/var/slot104/slots/0
[2026-01-26 19:35:31] 2026-01-26 18:29:53,877 | INFO     | sufficient remaining disk space (3314774179840 B)
[2026-01-26 19:35:31] 2026-01-26 18:29:53,877 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 19:35:31] 2026-01-26 18:29:53,877 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 19:35:31] 2026-01-26 18:29:53,878 | INFO     | update_server=False
[2026-01-26 19:35:31] 2026-01-26 18:29:53,878 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 19:35:31] 2026-01-26 18:29:53,950 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-26 19:35:31] 2026-01-26 18:29:53,950 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-26 19:35:31] 2026-01-26 18:29:53,951 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 19:35:31] 2026-01-26 18:29:53,951 | INFO     | will abort loop
[2026-01-26 19:35:31] 2026-01-26 18:29:53,982 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 19:35:31] 2026-01-26 18:29:54,110 | INFO     | all job control threads have been joined
[2026-01-26 19:35:31] 2026-01-26 18:29:54,500 | INFO     | all payload control threads have been joined
[2026-01-26 19:35:31] 2026-01-26 18:29:54,748 | INFO     | all data control threads have been joined
[2026-01-26 19:35:31] 2026-01-26 18:29:54,883 | INFO     | [job] retrieve thread has finished
[2026-01-26 19:35:31] 2026-01-26 18:29:54,956 | INFO     | [job] job monitor thread has finished
[2026-01-26 19:35:31] 2026-01-26 18:29:55,014 | INFO     | [job] validate thread has finished
[2026-01-26 19:35:31] 2026-01-26 18:29:55,113 | INFO     | [job] control thread has finished
[2026-01-26 19:35:31] 2026-01-26 18:29:55,124 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 19:35:31] 2026-01-26 18:29:55,503 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 19:35:31] 2026-01-26 18:29:55,505 | INFO     | [payload] control thread has finished
[2026-01-26 19:35:31] 2026-01-26 18:29:55,634 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 19:35:31] 2026-01-26 18:29:55,754 | INFO     | [data] control thread has finished
[2026-01-26 19:35:31] 2026-01-26 18:29:55,872 | INFO     | [data] copytool_in thread has finished
[2026-01-26 19:35:31] 2026-01-26 18:29:55,983 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 19:35:31] 2026-01-26 18:29:55,987 | INFO     | [data] copytool_out thread has finished
[2026-01-26 19:35:31] 2026-01-26 18:29:56,102 | INFO     | [payload] validate_post thread has finished
[2026-01-26 19:35:31] 2026-01-26 18:29:56,160 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 19:35:31] 2026-01-26 18:29:56,485 | INFO     | [payload] failed_post thread has finished
[2026-01-26 19:35:31] 2026-01-26 18:29:57,010 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 19:35:31] 2026-01-26 18:29:57,165 | INFO     | [job] queue monitor thread has finished
[2026-01-26 19:35:31] 2026-01-26 18:30:01,013 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 19:35:31] 2026-01-26 18:30:24,773 | INFO     | PID=1294130 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 19:35:31] 2026-01-26 18:30:24,777 | INFO     | .. there are 10 such processes running
[2026-01-26 19:35:31] 2026-01-26 18:30:24,777 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 19:35:31] 2026-01-26 18:30:24,777 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 19:35:31] 2026-01-26 18:30:24,777 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 19:35:31] 2026-01-26 18:30:40,174 | INFO     | [monitor] cgroup control has ended
[2026-01-26 19:35:31] 2026-01-26 18:30:40,570 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23024388298560)>', '<ExcThread(monitor, started 23024144484096)>']
[2026-01-26 19:35:31] 2026-01-26 18:30:40,845 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 19:35:31] 2026-01-26 18:30:40,845 | INFO     | [monitor] control thread has ended
[2026-01-26 19:35:31] 2026-01-26 18:30:45,595 | INFO     | all workflow threads have been joined
[2026-01-26 19:35:31] 2026-01-26 18:30:45,595 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 19:35:31] 2026-01-26 18:30:45,595 | INFO     | traces error code: 0
[2026-01-26 19:35:31] 2026-01-26 18:30:45,596 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 19:35:31] 2026-01-26 18:30:45,800 [wrapper] ==== pilot stdout END ====
[2026-01-26 19:35:31] 2026-01-26 18:30:45,804 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 19:35:31] 2026-01-26 18:30:45,808 [wrapper] pilotpid: 1294130
[2026-01-26 19:35:31] 2026-01-26 18:30:45,812 [wrapper] Pilot exit status: 0
[2026-01-26 19:35:31] 2026-01-26 18:30:45,828 [wrapper] pandaids: 6982915502
[2026-01-26 19:35:31] 2026-01-26 18:30:45,998 [wrapper] cleanup supervisor_pilot 1545541 1294131
[2026-01-26 19:35:31] 2026-01-26 18:30:46,002 [wrapper] Test setup, not cleaning
[2026-01-26 19:35:31] 2026-01-26 18:30:46,006 [wrapper] apfmon messages muted
[2026-01-26 19:35:31] 2026-01-26 18:30:46,010 [wrapper] ==== wrapper stdout END ====
[2026-01-26 19:35:31] 2026-01-26 18:30:46,013 [wrapper] ==== wrapper stderr END ====
[2026-01-26 19:35:31]  *** Error codes and diagnostics ***
[2026-01-26 19:35:31]     "exeErrorCode": 0,
[2026-01-26 19:35:31]     "exeErrorDiag": "",
[2026-01-26 19:35:31]     "pilotErrorCode": 0,
[2026-01-26 19:35:31]     "pilotErrorDiag": "",
[2026-01-26 19:35:31]  *** Listing of results directory ***
[2026-01-26 19:35:31] total 415208
[2026-01-26 19:35:31] -rw-r--r-- 1 boinc boinc    584422 Jan 25 10:42 pilot3.tar.gz
[2026-01-26 19:35:31] -rwx------ 1 boinc boinc     36322 Jan 25 10:46 runpilot2-wrapper.sh
[2026-01-26 19:35:31] -rw-r--r-- 1 boinc boinc      5111 Jan 25 10:48 queuedata.json
[2026-01-26 19:35:31] -rw-r--r-- 1 boinc boinc       100 Jan 26 16:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 19:35:31] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 16:26 run_atlas
[2026-01-26 19:35:31] -rw-r--r-- 1 boinc boinc       105 Jan 26 16:26 job.xml
[2026-01-26 19:35:31] -rw-r--r-- 1 boinc boinc      6692 Jan 26 16:27 init_data.xml
[2026-01-26 19:35:31] -rw-r--r-- 2 boinc boinc 247717198 Jan 26 16:27 EVNT.48318735._000013.pool.root.1
[2026-01-26 19:35:31] -rw-r--r-- 2 boinc boinc     15845 Jan 26 16:27 start_atlas.sh
[2026-01-26 19:35:31] drwxrwx--x 2 boinc boinc      4096 Jan 26 16:27 shared
[2026-01-26 19:35:31] -rw-r--r-- 2 boinc boinc    597775 Jan 26 16:27 input.tar.gz
[2026-01-26 19:35:31] -rw-r--r-- 1 boinc boinc         0 Jan 26 16:27 boinc_lockfile
[2026-01-26 19:35:31] -rw-r--r-- 1 boinc boinc      2603 Jan 26 16:27 pandaJob.out
[2026-01-26 19:35:31] -rw------- 1 boinc boinc   1002189 Jan 26 16:27 agis_schedconf.cvmfs.json
[2026-01-26 19:35:31] -rw------- 1 boinc boinc       443 Jan 26 16:27 workernode_map.json
[2026-01-26 19:35:31] drwx------ 5 boinc boinc      4096 Jan 26 16:27 pilot3
[2026-01-26 19:35:31] -rw------- 1 boinc boinc 169763345 Jan 26 19:29 HITS.48318737._000305.pool.root.1
[2026-01-26 19:35:31] -rw-r--r-- 1 boinc boinc       528 Jan 26 19:29 boinc_task_state.xml
[2026-01-26 19:35:31] -rw------- 1 boinc boinc      1032 Jan 26 19:29 memory_monitor_summary.json
[2026-01-26 19:35:31] -rw------- 1 boinc boinc   1516246 Jan 26 19:29 agis_ddmendpoints.agis.ALL.json
[2026-01-26 19:35:31] -rw------- 1 boinc boinc    345326 Jan 26 19:29 log.48318737._000305.job.log.tgz.1
[2026-01-26 19:35:31] -rw------- 1 boinc boinc        95 Jan 26 19:29 pilot_heartbeat.json
[2026-01-26 19:35:31] -rw------- 1 boinc boinc      6360 Jan 26 19:29 heartbeat.json
[2026-01-26 19:35:31] -rw------- 1 boinc boinc      5018 Jan 26 19:30 pilotlog.txt
[2026-01-26 19:35:31] -rw------- 1 boinc boinc   1530075 Jan 26 19:30 log.48318737._000305.job.log.1
[2026-01-26 19:35:31] -rw------- 1 boinc boinc       357 Jan 26 19:30 output.list
[2026-01-26 19:35:31] -rw-r--r-- 1 boinc boinc       620 Jan 26 19:30 runtime_log
[2026-01-26 19:35:31] -rw------- 1 boinc boinc   1894400 Jan 26 19:30 result.tar.gz
[2026-01-26 19:35:31] -rw------- 1 boinc boinc       665 Jan 26 19:30 xYJODm9rB48n9Rq4apOajLDm4fhM0noT9bVo0NGKDm3h0KDmDJm1Qm.diag
[2026-01-26 19:35:31] -rw-r--r-- 1 boinc boinc      9222 Jan 26 19:30 runtime_log.err
[2026-01-26 19:35:31] -rw-r--r-- 1 boinc boinc      8192 Jan 26 19:35 boinc_mmap_file
[2026-01-26 19:35:31] -rw-r--r-- 1 boinc boinc        26 Jan 26 19:35 wrapper_checkpoint.txt
[2026-01-26 19:35:31] -rw-r--r-- 1 boinc boinc     21150 Jan 26 19:35 stderr.txt
[2026-01-26 19:35:31] HITS file was successfully produced:
[2026-01-26 19:35:31] -rw------- 1 boinc boinc 169763345 Jan 26 19:29 shared/HITS.pool.root.1
[2026-01-26 19:35:31]  *** Contents of shared directory: ***
[2026-01-26 19:35:31] total 410160
[2026-01-26 19:35:31] -rw-r--r-- 2 boinc boinc 247717198 Jan 26 16:27 ATLAS.root_0
[2026-01-26 19:35:31] -rw-r--r-- 2 boinc boinc     15845 Jan 26 16:27 start_atlas.sh
[2026-01-26 19:35:31] -rw-r--r-- 2 boinc boinc    597775 Jan 26 16:27 input.tar.gz
[2026-01-26 19:35:31] -rw------- 1 boinc boinc 169763345 Jan 26 19:29 HITS.pool.root.1
[2026-01-26 19:35:31] -rw------- 1 boinc boinc   1894400 Jan 26 19:30 result.tar.gz
19:35:33 (1289653): run_atlas exited; CPU time 42504.700163
19:35:33 (1289653): called boinc_finish(0)

</stderr_txt>
]]>

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