Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:49:28 (3008787): wrapper (7.7.26015): starting
02:49:28 (3008787): wrapper: running run_atlas (--nthreads 3)
[2026-01-26 02:49:28] Arguments: --nthreads 3
[2026-01-26 02:49:28] Threads: 3
[2026-01-26 02:49:28] Checking for CVMFS
[2026-01-26 02:49:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 02:49:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 02:49:29] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 02:49:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 02:49:29] 2.9.2.0 1726919 7569 86800 155527 1 50 17727166 36864001 0 130560 0 3363422 99.987 227759 5728 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 02:49:29] CVMFS is ok
[2026-01-26 02:49:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 02:49:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 02:49:29] Further information can be found at the LHC@home message board.
[2026-01-26 02:49:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 02:49:29] Checking for apptainer binary...
[2026-01-26 02:49:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 02:49:29] Running /usr/bin/apptainer --version
[2026-01-26 02:49:29] apptainer version 1.4.1-1.1
[2026-01-26 02:49:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 02:49:29] thA312
[2026-01-26 02:49:29] apptainer works
[2026-01-26 02:49:29] Set ATHENA_PROC_NUMBER=3
[2026-01-26 02:49:29] Set ATHENA_CORE_NUMBER=3
[2026-01-26 02:49:29] Starting ATLAS job with PandaID=6981240329
[2026-01-26 02:49:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 04:15:11]  *** The last 200 lines of the pilot log: ***
[2026-01-26 04:15:11] 2026-01-26 03:14:39,404 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 04:15:11] 2026-01-26 03:14:39,404 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 04:15:11] 2026-01-26 03:14:39,404 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 04:15:11] 2026-01-26 03:14:39,404 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 04:15:11] 2026-01-26 03:14:39,405 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 04:15:11] 2026-01-26 03:14:39,405 | INFO     | job 6981240329 has completed (purged errors)
[2026-01-26 04:15:11] 2026-01-26 03:14:39,405 | INFO     | overall cleanup function is called
[2026-01-26 04:15:11] 2026-01-26 03:14:40,411 | INFO     | --- collectZombieJob: --- 10, [3017249]
[2026-01-26 04:15:11] 2026-01-26 03:14:40,411 | INFO     | zombie collector waiting for pid 3017249
[2026-01-26 04:15:11] 2026-01-26 03:14:40,411 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 04:15:11] 2026-01-26 03:14:40,411 | INFO     | collected zombie processes
[2026-01-26 04:15:11] 2026-01-26 03:14:40,412 | INFO     | will attempt to kill all subprocesses of pid=3017249
[2026-01-26 04:15:11] 2026-01-26 03:14:40,460 | INFO     | process IDs to be killed: [3017249] (in reverse order)
[2026-01-26 04:15:11] 2026-01-26 03:14:40,486 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 04:15:11] 2026-01-26 03:14:40,486 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 04:15:11] 2026-01-26 03:14:40,488 | INFO     | did not find any defunct processes belonging to 3017249
[2026-01-26 04:15:11] 2026-01-26 03:14:40,489 | INFO     | did not find any defunct processes belonging to 3017249
[2026-01-26 04:15:11] 2026-01-26 03:14:40,489 | INFO     | ready for new job
[2026-01-26 04:15:11] 2026-01-26 03:14:40,489 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 04:15:11] 2026-01-26 03:14:40,490 | INFO     | **************************************
[2026-01-26 04:15:11] 2026-01-26 03:14:40,490 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 04:15:11] 2026-01-26 03:14:40,490 | INFO     | **************************************
[2026-01-26 04:15:11] 2026-01-26 03:14:40,490 | INFO     | 
[2026-01-26 04:15:11] 2026-01-26 03:14:40,490 | INFO     | architecture information:
[2026-01-26 04:15:11] 2026-01-26 03:14:40,490 | INFO     | executing command: cat /etc/os-release
[2026-01-26 04:15:11] 2026-01-26 03:14:40,499 | INFO     | cat /etc/os-release:
[2026-01-26 04:15:11] NAME="CentOS Linux"
[2026-01-26 04:15:11] VERSION="7 (Core)"
[2026-01-26 04:15:11] ID="centos"
[2026-01-26 04:15:11] ID_LIKE="rhel fedora"
[2026-01-26 04:15:11] VERSION_ID="7"
[2026-01-26 04:15:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 04:15:11] ANSI_COLOR="0;31"
[2026-01-26 04:15:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 04:15:11] HOME_URL="https://www.centos.org/"
[2026-01-26 04:15:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 04:15:11] 
[2026-01-26 04:15:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 04:15:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 04:15:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 04:15:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 04:15:11] 
[2026-01-26 04:15:11] 2026-01-26 03:14:40,499 | INFO     | **************************************
[2026-01-26 04:15:11] 2026-01-26 03:14:41,001 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 04:15:11] 2026-01-26 03:14:41,012 | INFO     | sufficient remaining disk space (340284932096 B)
[2026-01-26 04:15:11] 2026-01-26 03:14:41,012 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 04:15:11] 2026-01-26 03:14:41,012 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 04:15:11] 2026-01-26 03:14:41,012 | INFO     | update_server=False
[2026-01-26 04:15:11] 2026-01-26 03:14:41,012 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 04:15:11] 2026-01-26 03:14:41,012 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 04:15:11] 2026-01-26 03:14:41,086 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 04:15:11] 2026-01-26 03:14:41,086 | INFO     | aborting loop
[2026-01-26 04:15:11] 2026-01-26 03:14:41,181 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 04:15:11] 2026-01-26 03:14:41,445 | INFO     | all job control threads have been joined
[2026-01-26 04:15:11] 2026-01-26 03:14:41,535 | INFO     | all data control threads have been joined
[2026-01-26 04:15:11] 2026-01-26 03:14:42,018 | INFO     | [job] retrieve thread has finished
[2026-01-26 04:15:11] 2026-01-26 03:14:42,018 | INFO     | [job] queue monitor thread has finished
[2026-01-26 04:15:11] 2026-01-26 03:14:42,092 | INFO     | [job] job monitor thread has finished
[2026-01-26 04:15:11] 2026-01-26 03:14:42,343 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 04:15:11] 2026-01-26 03:14:42,451 | INFO     | [job] control thread has finished
[2026-01-26 04:15:11] 2026-01-26 03:14:42,464 | INFO     | all payload control threads have been joined
[2026-01-26 04:15:11] 2026-01-26 03:14:42,541 | INFO     | [data] control thread has finished
[2026-01-26 04:15:11] 2026-01-26 03:14:42,550 | INFO     | [job] validate thread has finished
[2026-01-26 04:15:11] 2026-01-26 03:14:42,689 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 04:15:11] 2026-01-26 03:14:42,697 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 04:15:11] 2026-01-26 03:14:42,777 | INFO     | [payload] validate_post thread has finished
[2026-01-26 04:15:11] 2026-01-26 03:14:42,829 | INFO     | [data] copytool_in thread has finished
[2026-01-26 04:15:11] 2026-01-26 03:14:43,187 | INFO     | [data] copytool_out thread has finished
[2026-01-26 04:15:11] 2026-01-26 03:14:43,470 | INFO     | [payload] control thread has finished
[2026-01-26 04:15:11] 2026-01-26 03:14:43,470 | INFO     | [payload] failed_post thread has finished
[2026-01-26 04:15:11] 2026-01-26 03:14:43,826 | INFO     | [monitor] cgroup control has ended
[2026-01-26 04:15:11] 2026-01-26 03:14:44,045 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 04:15:11] 2026-01-26 03:14:48,052 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 04:15:11] 2026-01-26 03:14:51,231 | INFO     | job.realtimelogging is not enabled
[2026-01-26 04:15:11] 2026-01-26 03:14:52,237 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 04:15:11] 2026-01-26 03:14:53,532 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139923183793984)>', '<ExcThread(monitor, started 139922233087744)>']
[2026-01-26 04:15:11] 2026-01-26 03:14:58,557 | INFO     | all workflow threads have been joined
[2026-01-26 04:15:11] 2026-01-26 03:14:58,558 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 04:15:11] 2026-01-26 03:14:58,558 | INFO     | traces error code: 0
[2026-01-26 04:15:11] 2026-01-26 03:14:58,558 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 04:15:11] 2026-01-26 03:15:11,716 | INFO     | PID=3012823 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 04:15:11] 2026-01-26 03:15:11,716 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 04:15:11] 2026-01-26 03:15:11,716 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 04:15:11] 2026-01-26 03:15:11,716 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 04:15:11] 2026-01-26 03:15:11,716 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 04:15:11] 2026-01-26 03:15:11,716 | INFO     | [monitor] control thread has ended
[2026-01-26 04:15:11] 2026-01-26 03:15:11,777 [wrapper] ==== pilot stdout END ====
[2026-01-26 04:15:11] 2026-01-26 03:15:11,779 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 04:15:11] 2026-01-26 03:15:11,782 [wrapper] pilotpid: 3012823
[2026-01-26 04:15:11] 2026-01-26 03:15:11,784 [wrapper] Pilot exit status: 0
[2026-01-26 04:15:11] 2026-01-26 03:15:11,791 [wrapper] pandaids: 6981240329
[2026-01-26 04:15:11] 2026-01-26 03:15:11,809 [wrapper] cleanup supervisor_pilot 3023167 3012824
[2026-01-26 04:15:11] 2026-01-26 03:15:11,811 [wrapper] Test setup, not cleaning
[2026-01-26 04:15:11] 2026-01-26 03:15:11,814 [wrapper] apfmon messages muted
[2026-01-26 04:15:11] 2026-01-26 03:15:11,816 [wrapper] ==== wrapper stdout END ====
[2026-01-26 04:15:11] 2026-01-26 03:15:11,818 [wrapper] ==== wrapper stderr END ====
[2026-01-26 04:15:11]  *** Error codes and diagnostics ***
[2026-01-26 04:15:11]     "exeErrorCode": 0,
[2026-01-26 04:15:11]     "exeErrorDiag": "",
[2026-01-26 04:15:11]     "pilotErrorCode": 0,
[2026-01-26 04:15:11]     "pilotErrorDiag": "",
[2026-01-26 04:15:11]  *** Listing of results directory ***
[2026-01-26 04:15:11] total 715432
[2026-01-26 04:15:11] -rw-r--r-- 1 boinc boinc    584422 Jan 24 15:28 pilot3.tar.gz
[2026-01-26 04:15:11] -rwx------ 1 boinc boinc     36322 Jan 24 15:29 runpilot2-wrapper.sh
[2026-01-26 04:15:11] -rw-r--r-- 1 boinc boinc      5111 Jan 24 15:31 queuedata.json
[2026-01-26 04:15:11] -rw-r--r-- 1 boinc boinc       100 Jan 26 02:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 04:15:11] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 02:49 run_atlas
[2026-01-26 04:15:11] -rw-r--r-- 1 boinc boinc       105 Jan 26 02:49 job.xml
[2026-01-26 04:15:11] -rw-r--r-- 2 boinc boinc 527968601 Jan 26 02:49 EVNT.48310836._000018.pool.root.1
[2026-01-26 04:15:11] -rw-r--r-- 2 boinc boinc    597756 Jan 26 02:49 input.tar.gz
[2026-01-26 04:15:11] -rw-r--r-- 2 boinc boinc     15845 Jan 26 02:49 start_atlas.sh
[2026-01-26 04:15:11] drwxrwx--x 2 boinc boinc      4096 Jan 26 02:49 shared
[2026-01-26 04:15:11] -rw-r--r-- 1 boinc boinc         0 Jan 26 02:49 boinc_setup_complete
[2026-01-26 04:15:11] -rw-r--r-- 1 boinc boinc      6439 Jan 26 02:49 init_data.xml
[2026-01-26 04:15:11] -rw-r--r-- 1 boinc boinc         0 Jan 26 02:49 boinc_lockfile
[2026-01-26 04:15:11] -rw-r--r-- 1 boinc boinc      2497 Jan 26 02:49 pandaJob.out
[2026-01-26 04:15:11] -rw------- 1 boinc boinc   1004246 Jan 26 02:49 agis_schedconf.cvmfs.json
[2026-01-26 04:15:11] -rw------- 1 boinc boinc   1516246 Jan 26 02:49 agis_ddmendpoints.agis.ALL.json
[2026-01-26 04:15:11] -rw------- 1 boinc boinc       418 Jan 26 02:49 workernode_map.json
[2026-01-26 04:15:11] drwx------ 5 boinc boinc      4096 Jan 26 02:49 pilot3
[2026-01-26 04:15:11] -rw-r--r-- 1 boinc boinc       530 Jan 26 04:14 boinc_task_state.xml
[2026-01-26 04:15:11] -rw------- 1 boinc boinc 198735265 Jan 26 04:14 HITS.48310840._000753.pool.root.1
[2026-01-26 04:15:11] -rw------- 1 boinc boinc      1023 Jan 26 04:14 memory_monitor_summary.json
[2026-01-26 04:15:11] -rw------- 1 boinc boinc    242210 Jan 26 04:14 log.48310840._000753.job.log.tgz.1
[2026-01-26 04:15:11] -rw------- 1 boinc boinc      6301 Jan 26 04:14 heartbeat.json
[2026-01-26 04:15:11] -rw-r--r-- 1 boinc boinc      8192 Jan 26 04:14 boinc_mmap_file
[2026-01-26 04:15:11] -rw-r--r-- 1 boinc boinc        27 Jan 26 04:14 wrapper_checkpoint.txt
[2026-01-26 04:15:11] -rw------- 1 boinc boinc       747 Jan 26 04:15 pilotlog.txt
[2026-01-26 04:15:11] -rw------- 1 boinc boinc        95 Jan 26 04:15 pilot_heartbeat.json
[2026-01-26 04:15:11] -rw------- 1 boinc boinc    744856 Jan 26 04:15 log.48310840._000753.job.log.1
[2026-01-26 04:15:11] -rw------- 1 boinc boinc       357 Jan 26 04:15 output.list
[2026-01-26 04:15:11] -rw-r--r-- 1 boinc boinc       620 Jan 26 04:15 runtime_log
[2026-01-26 04:15:11] -rw------- 1 boinc boinc   1003520 Jan 26 04:15 result.tar.gz
[2026-01-26 04:15:11] -rw-r--r-- 1 boinc boinc      8896 Jan 26 04:15 runtime_log.err
[2026-01-26 04:15:11] -rw------- 1 boinc boinc       657 Jan 26 04:15 BOJMDmOpt38n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1jyKDmAgW1To.diag
[2026-01-26 04:15:11] -rw-r--r-- 1 boinc boinc     11406 Jan 26 04:15 stderr.txt
[2026-01-26 04:15:11] HITS file was successfully produced:
[2026-01-26 04:15:11] -rw------- 1 boinc boinc 198735265 Jan 26 04:14 shared/HITS.pool.root.1
[2026-01-26 04:15:11]  *** Contents of shared directory: ***
[2026-01-26 04:15:11] total 711264
[2026-01-26 04:15:11] -rw-r--r-- 2 boinc boinc 527968601 Jan 26 02:49 ATLAS.root_0
[2026-01-26 04:15:11] -rw-r--r-- 2 boinc boinc    597756 Jan 26 02:49 input.tar.gz
[2026-01-26 04:15:11] -rw-r--r-- 2 boinc boinc     15845 Jan 26 02:49 start_atlas.sh
[2026-01-26 04:15:11] -rw------- 1 boinc boinc 198735265 Jan 26 04:14 HITS.pool.root.1
[2026-01-26 04:15:11] -rw------- 1 boinc boinc   1003520 Jan 26 04:15 result.tar.gz
04:15:13 (3008787): run_atlas exited; CPU time 14652.862123
04:15:13 (3008787): called boinc_finish(0)

</stderr_txt>
]]>

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