Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:29:28 (1356707): wrapper (7.7.26015): starting
21:29:28 (1356707): wrapper: running run_atlas (--nthreads 4)
[2026-01-25 21:29:28] Arguments: --nthreads 4
[2026-01-25 21:29:28] Threads: 4
[2026-01-25 21:29:28] Checking for CVMFS
[2026-01-25 21:29:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-25 21:29:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-25 21:29:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-25 21:29:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-25 21:29:29] 2.9.2.0 41542 7493 109600 155520 0 50 22468664 36864001 0 130560 0 3720577 99.988 228739 5534 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-25 21:29:29] CVMFS is ok
[2026-01-25 21:29:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-25 21:29:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-25 21:29:29] Further information can be found at the LHC@home message board.
[2026-01-25 21:29:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-25 21:29:29] Checking for apptainer binary...
[2026-01-25 21:29:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-25 21:29:29] Running /usr/bin/apptainer --version
[2026-01-25 21:29:29] apptainer version 1.4.1-1.1
[2026-01-25 21:29:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-25 21:29:29] thA332a
[2026-01-25 21:29:29] apptainer works
[2026-01-25 21:29:29] Set ATHENA_PROC_NUMBER=4
[2026-01-25 21:29:29] Set ATHENA_CORE_NUMBER=4
[2026-01-25 21:29:29] Starting ATLAS job with PandaID=6982379813
[2026-01-25 21:29:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-25 22:37:52]  *** The last 200 lines of the pilot log: ***
[2026-01-25 22:37:52] 2026-01-25 21:37:22,076 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-25 22:37:52] 2026-01-25 21:37:22,076 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-25 22:37:52] 2026-01-25 21:37:22,076 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-25 22:37:52] 2026-01-25 21:37:22,077 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-25 22:37:52] 2026-01-25 21:37:22,077 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-25 22:37:52] 2026-01-25 21:37:22,077 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-25 22:37:52] 2026-01-25 21:37:22,077 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-25 22:37:52] 2026-01-25 21:37:22,077 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-25 22:37:52] 2026-01-25 21:37:22,077 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-25 22:37:52] 2026-01-25 21:37:22,077 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-25 22:37:52] 2026-01-25 21:37:22,077 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-25 22:37:52] 2026-01-25 21:37:22,077 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-25 22:37:52] 2026-01-25 21:37:22,077 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-25 22:37:52] 2026-01-25 21:37:22,077 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-25 22:37:52] 2026-01-25 21:37:22,077 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-25 22:37:52] 2026-01-25 21:37:22,077 | INFO     | job 6982379813 has completed (purged errors)
[2026-01-25 22:37:52] 2026-01-25 21:37:22,077 | INFO     | overall cleanup function is called
[2026-01-25 22:37:52] 2026-01-25 21:37:23,082 | INFO     | --- collectZombieJob: --- 10, [1365338]
[2026-01-25 22:37:52] 2026-01-25 21:37:23,082 | INFO     | zombie collector waiting for pid 1365338
[2026-01-25 22:37:52] 2026-01-25 21:37:23,082 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-25 22:37:52] 2026-01-25 21:37:23,082 | INFO     | collected zombie processes
[2026-01-25 22:37:52] 2026-01-25 21:37:23,082 | INFO     | will attempt to kill all subprocesses of pid=1365338
[2026-01-25 22:37:52] 2026-01-25 21:37:23,126 | INFO     | process IDs to be killed: [1365338] (in reverse order)
[2026-01-25 22:37:52] 2026-01-25 21:37:23,160 | WARNING  | found no corresponding commands to process id(s)
[2026-01-25 22:37:52] 2026-01-25 21:37:23,161 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-25 22:37:52] 2026-01-25 21:37:23,162 | INFO     | did not find any defunct processes belonging to 1365338
[2026-01-25 22:37:52] 2026-01-25 21:37:23,164 | INFO     | did not find any defunct processes belonging to 1365338
[2026-01-25 22:37:52] 2026-01-25 21:37:23,164 | INFO     | ready for new job
[2026-01-25 22:37:52] 2026-01-25 21:37:23,164 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-25 22:37:52] 2026-01-25 21:37:23,164 | INFO     | **************************************
[2026-01-25 22:37:52] 2026-01-25 21:37:23,164 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-25 22:37:52] 2026-01-25 21:37:23,165 | INFO     | **************************************
[2026-01-25 22:37:52] 2026-01-25 21:37:23,165 | INFO     | 
[2026-01-25 22:37:52] 2026-01-25 21:37:23,165 | INFO     | architecture information:
[2026-01-25 22:37:52] 2026-01-25 21:37:23,165 | INFO     | executing command: cat /etc/os-release
[2026-01-25 22:37:52] 2026-01-25 21:37:23,180 | INFO     | cat /etc/os-release:
[2026-01-25 22:37:52] NAME="CentOS Linux"
[2026-01-25 22:37:52] VERSION="7 (Core)"
[2026-01-25 22:37:52] ID="centos"
[2026-01-25 22:37:52] ID_LIKE="rhel fedora"
[2026-01-25 22:37:52] VERSION_ID="7"
[2026-01-25 22:37:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-25 22:37:52] ANSI_COLOR="0;31"
[2026-01-25 22:37:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-25 22:37:52] HOME_URL="https://www.centos.org/"
[2026-01-25 22:37:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-25 22:37:52] 
[2026-01-25 22:37:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-25 22:37:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-25 22:37:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-25 22:37:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-25 22:37:52] 
[2026-01-25 22:37:52] 2026-01-25 21:37:23,180 | INFO     | **************************************
[2026-01-25 22:37:52] 2026-01-25 21:37:23,683 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-25 22:37:52] 2026-01-25 21:37:23,701 | INFO     | sufficient remaining disk space (334751596544 B)
[2026-01-25 22:37:52] 2026-01-25 21:37:23,701 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-25 22:37:52] 2026-01-25 21:37:23,702 | INFO     | current server update state: UPDATING_FINAL
[2026-01-25 22:37:52] 2026-01-25 21:37:23,702 | INFO     | update_server=False
[2026-01-25 22:37:52] 2026-01-25 21:37:23,702 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-25 22:37:52] 2026-01-25 21:37:23,702 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-25 22:37:52] 2026-01-25 21:37:23,702 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-25 22:37:52] 2026-01-25 21:37:23,702 | INFO     | found 0 job(s) in 20 queues
[2026-01-25 22:37:52] 2026-01-25 21:37:23,702 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-25 22:37:52] 2026-01-25 21:37:23,702 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-25 22:37:52] 2026-01-25 21:37:23,706 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-25 22:37:52] 2026-01-25 21:37:23,706 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-25 22:37:52] 2026-01-25 21:37:23,706 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-25 22:37:52] 2026-01-25 21:37:23,706 | INFO     | will abort loop
[2026-01-25 22:37:52] 2026-01-25 21:37:24,311 | INFO     | all data control threads have been joined
[2026-01-25 22:37:52] 2026-01-25 21:37:24,707 | INFO     | [job] retrieve thread has finished
[2026-01-25 22:37:52] 2026-01-25 21:37:24,708 | INFO     | [job] job monitor thread has finished
[2026-01-25 22:37:52] 2026-01-25 21:37:24,755 | INFO     | [job] create_data_payload thread has finished
[2026-01-25 22:37:52] 2026-01-25 21:37:24,779 | INFO     | [payload] validate_pre thread has finished
[2026-01-25 22:37:52] 2026-01-25 21:37:24,811 | INFO     | all job control threads have been joined
[2026-01-25 22:37:52] 2026-01-25 21:37:24,880 | INFO     | [payload] failed_post thread has finished
[2026-01-25 22:37:52] 2026-01-25 21:37:24,966 | INFO     | [data] copytool_in thread has finished
[2026-01-25 22:37:52] 2026-01-25 21:37:25,008 | INFO     | all payload control threads have been joined
[2026-01-25 22:37:52] 2026-01-25 21:37:25,317 | INFO     | [data] control thread has finished
[2026-01-25 22:37:52] 2026-01-25 21:37:25,356 | INFO     | [payload] validate_post thread has finished
[2026-01-25 22:37:52] 2026-01-25 21:37:25,394 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-25 22:37:52] 2026-01-25 21:37:25,708 | INFO     | [data] copytool_out thread has finished
[2026-01-25 22:37:52] 2026-01-25 21:37:25,748 | INFO     | [payload] execute_payloads thread has finished
[2026-01-25 22:37:52] 2026-01-25 21:37:25,816 | INFO     | [job] control thread has finished
[2026-01-25 22:37:52] 2026-01-25 21:37:26,014 | INFO     | [payload] control thread has finished
[2026-01-25 22:37:52] 2026-01-25 21:37:26,132 | INFO     | [job] validate thread has finished
[2026-01-25 22:37:52] 2026-01-25 21:37:26,581 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-25 22:37:52] 2026-01-25 21:37:27,060 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-25 22:37:52] 2026-01-25 21:37:27,587 | INFO     | [job] queue monitor thread has finished
[2026-01-25 22:37:52] 2026-01-25 21:37:31,067 | INFO     | [data] queue_monitor thread has finished
[2026-01-25 22:37:52] 2026-01-25 21:37:46,997 | INFO     | [monitor] cgroup control has ended
[2026-01-25 22:37:52] 2026-01-25 21:37:47,509 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140443524556608)>', '<ExcThread(monitor, started 140442561648384)>']
[2026-01-25 22:37:52] 2026-01-25 21:37:47,827 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-25 22:37:52] 2026-01-25 21:37:47,827 | INFO     | [monitor] control thread has ended
[2026-01-25 22:37:52] 2026-01-25 21:37:52,535 | INFO     | all workflow threads have been joined
[2026-01-25 22:37:52] 2026-01-25 21:37:52,535 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-25 22:37:52] 2026-01-25 21:37:52,535 | INFO     | traces error code: 0
[2026-01-25 22:37:52] 2026-01-25 21:37:52,535 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-25 22:37:52] 2026-01-25 21:37:52,617 [wrapper] ==== pilot stdout END ====
[2026-01-25 22:37:52] 2026-01-25 21:37:52,621 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-25 22:37:52] 2026-01-25 21:37:52,625 [wrapper] pilotpid: 1360827
[2026-01-25 22:37:52] 2026-01-25 21:37:52,629 [wrapper] Pilot exit status: 0
[2026-01-25 22:37:52] 2026-01-25 21:37:52,641 [wrapper] pandaids: 6982379813
[2026-01-25 22:37:52] 2026-01-25 21:37:52,663 [wrapper] cleanup supervisor_pilot 1370601 1360828
[2026-01-25 22:37:52] 2026-01-25 21:37:52,667 [wrapper] Test setup, not cleaning
[2026-01-25 22:37:52] 2026-01-25 21:37:52,671 [wrapper] apfmon messages muted
[2026-01-25 22:37:52] 2026-01-25 21:37:52,674 [wrapper] ==== wrapper stdout END ====
[2026-01-25 22:37:52] 2026-01-25 21:37:52,678 [wrapper] ==== wrapper stderr END ====
[2026-01-25 22:37:52]  *** Error codes and diagnostics ***
[2026-01-25 22:37:52]     "exeErrorCode": 0,
[2026-01-25 22:37:52]     "exeErrorDiag": "",
[2026-01-25 22:37:52]     "pilotErrorCode": 0,
[2026-01-25 22:37:52]     "pilotErrorDiag": "",
[2026-01-25 22:37:52]  *** Listing of results directory ***
[2026-01-25 22:37:52] total 657612
[2026-01-25 22:37:52] -rw-r--r-- 1 boinc boinc    584422 Jan 25 05:52 pilot3.tar.gz
[2026-01-25 22:37:52] -rwx------ 1 boinc boinc     36322 Jan 25 05:53 runpilot2-wrapper.sh
[2026-01-25 22:37:52] -rw-r--r-- 1 boinc boinc      5111 Jan 25 05:54 queuedata.json
[2026-01-25 22:37:52] -rw-r--r-- 1 boinc boinc       100 Jan 25 21:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-25 22:37:52] -rwxr-xr-x 1 boinc boinc      7986 Jan 25 21:29 run_atlas
[2026-01-25 22:37:52] -rw-r--r-- 1 boinc boinc       105 Jan 25 21:29 job.xml
[2026-01-25 22:37:52] -rw-r--r-- 2 boinc boinc 490835468 Jan 25 21:29 EVNT.48310721._000106.pool.root.1
[2026-01-25 22:37:52] -rw-r--r-- 2 boinc boinc    597762 Jan 25 21:29 input.tar.gz
[2026-01-25 22:37:52] -rw-r--r-- 2 boinc boinc     15845 Jan 25 21:29 start_atlas.sh
[2026-01-25 22:37:52] drwxrwx--x 2 boinc boinc      4096 Jan 25 21:29 shared
[2026-01-25 22:37:52] -rw-r--r-- 1 boinc boinc         0 Jan 25 21:29 boinc_setup_complete
[2026-01-25 22:37:52] -rw-r--r-- 1 boinc boinc      6370 Jan 25 21:29 init_data.xml
[2026-01-25 22:37:52] -rw-r--r-- 1 boinc boinc         0 Jan 25 21:29 boinc_lockfile
[2026-01-25 22:37:52] -rw-r--r-- 1 boinc boinc      2533 Jan 25 21:29 pandaJob.out
[2026-01-25 22:37:52] -rw------- 1 boinc boinc   1004246 Jan 25 21:29 agis_schedconf.cvmfs.json
[2026-01-25 22:37:52] -rw------- 1 boinc boinc   1516246 Jan 25 21:29 agis_ddmendpoints.agis.ALL.json
[2026-01-25 22:37:52] -rw------- 1 boinc boinc       422 Jan 25 21:29 workernode_map.json
[2026-01-25 22:37:52] drwx------ 5 boinc boinc      4096 Jan 25 21:29 pilot3
[2026-01-25 22:37:52] -rw------- 1 boinc boinc 176919759 Jan 25 22:36 HITS.48310724._005254.pool.root.1
[2026-01-25 22:37:52] -rw------- 1 boinc boinc        95 Jan 25 22:36 pilot_heartbeat.json
[2026-01-25 22:37:52] -rw-r--r-- 1 boinc boinc       530 Jan 25 22:37 boinc_task_state.xml
[2026-01-25 22:37:52] -rw------- 1 boinc boinc      1025 Jan 25 22:37 memory_monitor_summary.json
[2026-01-25 22:37:52] -rw------- 1 boinc boinc    246680 Jan 25 22:37 log.48310724._005254.job.log.tgz.1
[2026-01-25 22:37:52] -rw------- 1 boinc boinc      6315 Jan 25 22:37 heartbeat.json
[2026-01-25 22:37:52] -rw-r--r-- 1 boinc boinc        27 Jan 25 22:37 wrapper_checkpoint.txt
[2026-01-25 22:37:52] -rw-r--r-- 1 boinc boinc      8192 Jan 25 22:37 boinc_mmap_file
[2026-01-25 22:37:52] -rw------- 1 boinc boinc      4738 Jan 25 22:37 pilotlog.txt
[2026-01-25 22:37:52] -rw------- 1 boinc boinc    604599 Jan 25 22:37 log.48310724._005254.job.log.1
[2026-01-25 22:37:52] -rw------- 1 boinc boinc       357 Jan 25 22:37 output.list
[2026-01-25 22:37:52] -rw-r--r-- 1 boinc boinc       620 Jan 25 22:37 runtime_log
[2026-01-25 22:37:52] -rw------- 1 boinc boinc    870400 Jan 25 22:37 result.tar.gz
[2026-01-25 22:37:52] -rw-r--r-- 1 boinc boinc      8901 Jan 25 22:37 runtime_log.err
[2026-01-25 22:37:52] -rw------- 1 boinc boinc       658 Jan 25 22:37 0guKDmgI738n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQ1zKDmutiJan.diag
[2026-01-25 22:37:52] -rw-r--r-- 1 boinc boinc     12497 Jan 25 22:37 stderr.txt
[2026-01-25 22:37:52] HITS file was successfully produced:
[2026-01-25 22:37:52] -rw------- 1 boinc boinc 176919759 Jan 25 22:36 shared/HITS.pool.root.1
[2026-01-25 22:37:52]  *** Contents of shared directory: ***
[2026-01-25 22:37:52] total 653568
[2026-01-25 22:37:52] -rw-r--r-- 2 boinc boinc 490835468 Jan 25 21:29 ATLAS.root_0
[2026-01-25 22:37:52] -rw-r--r-- 2 boinc boinc    597762 Jan 25 21:29 input.tar.gz
[2026-01-25 22:37:52] -rw-r--r-- 2 boinc boinc     15845 Jan 25 21:29 start_atlas.sh
[2026-01-25 22:37:52] -rw------- 1 boinc boinc 176919759 Jan 25 22:36 HITS.pool.root.1
[2026-01-25 22:37:52] -rw------- 1 boinc boinc    870400 Jan 25 22:37 result.tar.gz
22:37:54 (1356707): run_atlas exited; CPU time 15210.476944
22:37:54 (1356707): called boinc_finish(0)

</stderr_txt>
]]>

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