Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:56:23 (24126): wrapper (7.7.26015): starting
07:56:23 (24126): wrapper: running run_atlas (--nthreads 12)
[2026-01-25 07:56:23] Arguments: --nthreads 12
[2026-01-25 07:56:23] Threads: 12
[2026-01-25 07:56:23] Checking for CVMFS
[2026-01-25 07:56:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-25 07:56:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-25 07:56:24] Running cvmfs_config stat atlas.cern.ch
[2026-01-25 07:56:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-25 07:56:24] 2.11.2.0 2987 374064 94620 155509 2 50 19811268 20275200 1 130560 1 158365187 99.945 23487109 16450 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-25 07:56:24] CVMFS is ok
[2026-01-25 07:56:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-25 07:56:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-25 07:56:24] Further information can be found at the LHC@home message board.
[2026-01-25 07:56:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-25 07:56:24] Checking for apptainer binary...
[2026-01-25 07:56:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-25 07:56:24] Running /usr/bin/apptainer --version
[2026-01-25 07:56:24] apptainer version 1.3.2-1.el7
[2026-01-25 07:56:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-25 07:56:26] c-205-19.aglt2.org
[2026-01-25 07:56:26] apptainer works
[2026-01-25 07:56:26] Set ATHENA_PROC_NUMBER=12
[2026-01-25 07:56:26] Set ATHENA_CORE_NUMBER=12
[2026-01-25 07:56:26] Starting ATLAS job with PandaID=6981241205
[2026-01-25 07:56:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-25 09:11:59]  *** The last 200 lines of the pilot log: ***
[2026-01-25 09:11:59]  domain=
[2026-01-25 09:11:59]  filesize=403308
[2026-01-25 09:11:59]  filetype=log
[2026-01-25 09:11:59]  guid=2e8772ce-c7a0-4e50-8d5f-d16c11472e4a
[2026-01-25 09:11:59]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-25 09:11:59]  is_altstaged=None
[2026-01-25 09:11:59]  is_tar=False
[2026-01-25 09:11:59]  lfn=log.48310840._000881.job.log.tgz.1
[2026-01-25 09:11:59]  mtime=0
[2026-01-25 09:11:59]  protocol_id=None
[2026-01-25 09:11:59]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-25 09:11:59]  replicas=None
[2026-01-25 09:11:59]  scope=mc23_13p6TeV
[2026-01-25 09:11:59]  status=None
[2026-01-25 09:11:59]  status_code=0
[2026-01-25 09:11:59]  storage_token=
[2026-01-25 09:11:59]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6981241205/log.48310840._000881.job.log.tgz.1
[2026-01-25 09:11:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7d/93/log.48310840._000881.job.log.tgz.1
[2026-01-25 09:11:59]  workdir=None
[2026-01-25 09:11:59] ]
[2026-01-25 09:11:59] 2026-01-25 14:10:51,332 | INFO     | transferring file log.48310840._000881.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6981241205/log.48310840._000881.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-25 09:11:59] 2026-01-25 14:10:51,333 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6981241205/log.48310840._000881.job.log.tgz.1 /tmp/boinchome/slots/0/log.48310840._000881.job
[2026-01-25 09:11:59] 2026-01-25 14:10:51,354 | INFO     | adding to output.list: log.48310840._000881.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7d/93/log.48310840._000881.job.log.tg
[2026-01-25 09:11:59] 2026-01-25 14:10:51,355 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-25 09:11:59] 2026-01-25 14:10:51,356 | INFO     | summary of transferred files:
[2026-01-25 09:11:59] 2026-01-25 14:10:51,356 | INFO     |  -- lfn=log.48310840._000881.job.log.tgz.1, status_code=0, status=transferred
[2026-01-25 09:11:59] 2026-01-25 14:10:51,356 | INFO     | stage-out finished correctly
[2026-01-25 09:11:59] 2026-01-25 14:10:51,874 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-25 09:11:59] 2026-01-25 14:10:52,400 | INFO     | time since job start (4445s) is within the limit (349056.0s)
[2026-01-25 09:11:59] 2026-01-25 14:10:52,479 | INFO     | monitor loop #338: job 0:6981241205 is in state 'finished'
[2026-01-25 09:11:59] 2026-01-25 14:10:52,479 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-25 09:11:59] 2026-01-25 14:10:53,574 | INFO     | job 6981241205 has state=finished
[2026-01-25 09:11:59] 2026-01-25 14:10:53,574 | INFO     | preparing for final server update for job 6981241205 in state='finished'
[2026-01-25 09:11:59] 2026-01-25 14:10:53,574 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6981241205/jobReport.json
[2026-01-25 09:11:59] 2026-01-25 14:10:53,577 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-01-25 09:11:59] 2026-01-25 14:10:53,577 | INFO     | this job has now completed (state=finished)
[2026-01-25 09:11:59] 2026-01-25 14:10:53,577 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-25 09:11:59] 2026-01-25 14:10:53,577 | INFO     | log transfer has been attempted: DONE
[2026-01-25 09:11:59] 2026-01-25 14:10:53,578 | INFO     | job 6981241205 has finished - writing final server update
[2026-01-25 09:11:59] 2026-01-25 14:10:53,578 | INFO     | total number of processed events: 400 (read)
[2026-01-25 09:11:59] 2026-01-25 14:10:53,580 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6981241205/memory_monitor_summary.json (trf name=prmon)
[2026-01-25 09:11:59] 2026-01-25 14:10:53,580 | INFO     | extracted standard info from prmon json
[2026-01-25 09:11:59] 2026-01-25 14:10:53,580 | INFO     | extracted standard memory fields from prmon json
[2026-01-25 09:11:59] 2026-01-25 14:10:53,580 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-25 09:11:59] 2026-01-25 14:10:53,581 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-25 09:11:59] 2026-01-25 14:10:53,581 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-25 09:11:59] 2026-01-25 14:10:53,582 | INFO     | fitting pss+swap vs Time
[2026-01-25 09:11:59] 2026-01-25 14:10:53,582 | INFO     | sum of square deviations: 89127252.5
[2026-01-25 09:11:59] 2026-01-25 14:10:53,583 | INFO     | sum of deviations: -2689114850.0
[2026-01-25 09:11:59] 2026-01-25 14:10:53,583 | INFO     | mean x: 1769348118.5
[2026-01-25 09:11:59] 2026-01-25 14:10:53,583 | INFO     | mean y: 2721422.0303030303
[2026-01-25 09:11:59] 2026-01-25 14:10:53,583 | INFO     | intersect: 53386845433.683304
[2026-01-25 09:11:59] 2026-01-25 14:10:53,583 | INFO     | chi2: 0.0864037339940025
[2026-01-25 09:11:59] 2026-01-25 14:10:53,583 | INFO     | current memory leak: -30.17 B/s (using 66 data points, chi2=0.09)
[2026-01-25 09:11:59] 2026-01-25 14:10:53,583 | INFO     | could have reported an average CPU frequency of 1695 MHz (6 samples)
[2026-01-25 09:11:59] 2026-01-25 14:10:53,584 | INFO     | ..............................
[2026-01-25 09:11:59] 2026-01-25 14:10:53,584 | INFO     | . Timing measurements:
[2026-01-25 09:11:59] 2026-01-25 14:10:53,584 | INFO     | . get job = 0 s
[2026-01-25 09:11:59] 2026-01-25 14:10:53,584 | INFO     | . initial setup = 7 s
[2026-01-25 09:11:59] 2026-01-25 14:10:53,584 | INFO     | . payload setup = 7 s
[2026-01-25 09:11:59] 2026-01-25 14:10:53,584 | INFO     | . stage-in = 0 s
[2026-01-25 09:11:59] 2026-01-25 14:10:53,584 | INFO     | . payload execution = 4420 s
[2026-01-25 09:11:59] 2026-01-25 14:10:53,584 | INFO     | . stage-out = 0 s
[2026-01-25 09:11:59] 2026-01-25 14:10:53,584 | INFO     | . log creation = 0 s
[2026-01-25 09:11:59] 2026-01-25 14:10:53,585 | INFO     | ..............................
[2026-01-25 09:11:59] 2026-01-25 14:10:53,862 | INFO     | 
[2026-01-25 09:11:59] 2026-01-25 14:10:53,862 | INFO     | job summary report
[2026-01-25 09:11:59] 2026-01-25 14:10:53,862 | INFO     | --------------------------------------------------
[2026-01-25 09:11:59] 2026-01-25 14:10:53,862 | INFO     | PanDA job id: 6981241205
[2026-01-25 09:11:59] 2026-01-25 14:10:53,862 | INFO     | task id: 48310840
[2026-01-25 09:11:59] 2026-01-25 14:10:53,863 | INFO     | errors: (none)
[2026-01-25 09:11:59] 2026-01-25 14:10:53,863 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-25 09:11:59] 2026-01-25 14:10:53,863 | INFO     | pilot state: finished 
[2026-01-25 09:11:59] 2026-01-25 14:10:53,863 | INFO     | transexitcode: 0
[2026-01-25 09:11:59] 2026-01-25 14:10:53,863 | INFO     | exeerrorcode: 0
[2026-01-25 09:11:59] 2026-01-25 14:10:53,863 | INFO     | exeerrordiag: 
[2026-01-25 09:11:59] 2026-01-25 14:10:53,864 | INFO     | exitcode: 0
[2026-01-25 09:11:59] 2026-01-25 14:10:53,864 | INFO     | exitmsg: OK
[2026-01-25 09:11:59] 2026-01-25 14:10:53,864 | INFO     | cpuconsumptiontime: 47245 s
[2026-01-25 09:11:59] 2026-01-25 14:10:53,864 | INFO     | nevents: 400
[2026-01-25 09:11:59] 2026-01-25 14:10:53,864 | INFO     | neventsw: 0
[2026-01-25 09:11:59] 2026-01-25 14:10:53,864 | INFO     | pid: 32630
[2026-01-25 09:11:59] 2026-01-25 14:10:53,865 | INFO     | pgrp: 32630
[2026-01-25 09:11:59] 2026-01-25 14:10:53,865 | INFO     | corecount: 12
[2026-01-25 09:11:59] 2026-01-25 14:10:53,865 | INFO     | event service: False
[2026-01-25 09:11:59] 2026-01-25 14:10:53,865 | INFO     | sizes: {0: 2284207, 11: 2284207, 4431: 2310270, 4433: 2319324, 4435: 2319462}
[2026-01-25 09:11:59] 2026-01-25 14:10:53,865 | INFO     | --------------------------------------------------
[2026-01-25 09:11:59] 2026-01-25 14:10:53,865 | INFO     | 
[2026-01-25 09:11:59] 2026-01-25 14:10:53,866 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-25 09:11:59] 2026-01-25 14:10:53,889 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-25 09:11:59] 2026-01-25 14:10:53,889 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-25 09:11:59] 2026-01-25 14:10:53,889 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-25 09:11:59] 2026-01-25 14:10:53,889 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-25 09:11:59] 2026-01-25 14:10:53,889 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-25 09:11:59] 2026-01-25 14:10:53,890 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-25 09:11:59] 2026-01-25 14:10:53,890 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-25 09:11:59] 2026-01-25 14:10:53,890 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-25 09:11:59] 2026-01-25 14:10:53,890 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-25 09:11:59] 2026-01-25 14:10:53,890 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-25 09:11:59] 2026-01-25 14:10:53,891 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-25 09:11:59] 2026-01-25 14:10:53,891 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-25 09:11:59] 2026-01-25 14:10:53,891 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-25 09:11:59] 2026-01-25 14:10:53,891 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-25 09:11:59] 2026-01-25 14:10:53,891 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-25 09:11:59] 2026-01-25 14:10:53,891 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-25 09:11:59] 2026-01-25 14:10:53,892 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-25 09:11:59] 2026-01-25 14:10:53,892 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-25 09:11:59] 2026-01-25 14:10:53,892 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-25 09:11:59] 2026-01-25 14:10:53,892 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-25 09:11:59] 2026-01-25 14:10:53,892 | INFO     | job 6981241205 has completed (purged errors)
[2026-01-25 09:11:59] 2026-01-25 14:10:53,893 | INFO     | overall cleanup function is called
[2026-01-25 09:11:59] 2026-01-25 14:10:54,901 | INFO     | --- collectZombieJob: --- 10, [32630]
[2026-01-25 09:11:59] 2026-01-25 14:10:54,901 | INFO     | zombie collector waiting for pid 32630
[2026-01-25 09:11:59] 2026-01-25 14:10:54,901 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-25 09:11:59] 2026-01-25 14:10:54,901 | INFO     | collected zombie processes
[2026-01-25 09:11:59] 2026-01-25 14:10:54,902 | INFO     | will attempt to kill all subprocesses of pid=32630
[2026-01-25 09:11:59] 2026-01-25 14:10:54,990 | INFO     | process IDs to be killed: [32630] (in reverse order)
[2026-01-25 09:11:59] 2026-01-25 14:10:55,049 | WARNING  | found no corresponding commands to process id(s)
[2026-01-25 09:11:59] 2026-01-25 14:10:55,049 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-25 09:11:59] 2026-01-25 14:10:55,053 | INFO     | did not find any defunct processes belonging to 32630
[2026-01-25 09:11:59] 2026-01-25 14:10:55,056 | INFO     | did not find any defunct processes belonging to 32630
[2026-01-25 09:11:59] 2026-01-25 14:10:55,057 | INFO     | ready for new job
[2026-01-25 09:11:59] 2026-01-25 14:10:55,057 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-25 09:11:59] 2026-01-25 14:10:55,058 | INFO     | **************************************
[2026-01-25 09:11:59] 2026-01-25 14:10:55,058 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-25 09:11:59] 2026-01-25 14:10:55,058 | INFO     | **************************************
[2026-01-25 09:11:59] 2026-01-25 14:10:55,058 | INFO     | 
[2026-01-25 09:11:59] 2026-01-25 14:10:55,059 | INFO     | architecture information:
[2026-01-25 09:11:59] 2026-01-25 14:10:55,059 | INFO     | executing command: cat /etc/os-release
[2026-01-25 09:11:59] 2026-01-25 14:10:55,074 | INFO     | cat /etc/os-release:
[2026-01-25 09:11:59] NAME="CentOS Linux"
[2026-01-25 09:11:59] VERSION="7 (Core)"
[2026-01-25 09:11:59] ID="centos"
[2026-01-25 09:11:59] ID_LIKE="rhel fedora"
[2026-01-25 09:11:59] VERSION_ID="7"
[2026-01-25 09:11:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-25 09:11:59] ANSI_COLOR="0;31"
[2026-01-25 09:11:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-25 09:11:59] HOME_URL="https://www.centos.org/"
[2026-01-25 09:11:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-25 09:11:59] 
[2026-01-25 09:11:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-25 09:11:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-25 09:11:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-25 09:11:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-25 09:11:59] 
[2026-01-25 09:11:59] 2026-01-25 14:10:55,074 | INFO     | **************************************
[2026-01-25 09:11:59] 2026-01-25 14:10:55,577 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-25 09:11:59] 2026-01-25 14:10:55,593 | INFO     | sufficient remaining disk space (28693233664 B)
[2026-01-25 09:11:59] 2026-01-25 14:10:55,593 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-25 09:11:59] 2026-01-25 14:10:55,594 | INFO     | current server update state: UPDATING_FINAL
[2026-01-25 09:11:59] 2026-01-25 14:10:55,594 | INFO     | update_server=False
[2026-01-25 09:11:59] 2026-01-25 14:10:55,594 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-25 09:11:59] 2026-01-25 14:10:55,594 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-25 09:11:59] 2026-01-25 14:10:55,788 | INFO     | all data control threads have been joined
[2026-01-25 09:11:59] 2026-01-25 14:10:55,988 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-25 09:11:59] 2026-01-25 14:10:55,988 | INFO     | aborting loop
[2026-01-25 09:11:59] 2026-01-25 14:10:56,173 | INFO     | all job control threads have been joined
[2026-01-25 09:11:59] 2026-01-25 14:10:56,599 | INFO     | [job] retrieve thread has finished
[2026-01-25 09:11:59] 2026-01-25 14:10:56,600 | INFO     | [job] queue monitor thread has finished
[2026-01-25 09:11:59] 2026-01-25 14:10:56,752 | INFO     | [job] create_data_payload thread has finished
[2026-01-25 09:11:59] 2026-01-25 14:10:56,756 | INFO     | all payload control threads have been joined
[2026-01-25 09:11:59] 2026-01-25 14:10:56,759 | INFO     | [job] validate thread has finished
[2026-01-25 09:11:59] 2026-01-25 14:10:56,794 | INFO     | [data] control thread has finished
[2026-01-25 09:11:59] 2026-01-25 14:10:56,951 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-25 09:11:59] 2026-01-25 14:10:56,955 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-25 09:11:59] 2026-01-25 14:10:56,993 | INFO     | [job] job monitor thread has finished
[2026-01-25 09:11:59] 2026-01-25 14:10:57,060 | INFO     | [payload] validate_post thread has finished
[2026-01-25 09:11:59] 2026-01-25 14:10:57,104 | INFO     | [payload] validate_pre thread has finished
[2026-01-25 09:11:59] 2026-01-25 14:10:57,106 | INFO     | [data] copytool_in thread has finished
[2026-01-25 09:11:59] 2026-01-25 14:10:57,178 | INFO     | [job] control thread has finished
[2026-01-25 09:11:59] 2026-01-25 14:10:57,288 | INFO     | [payload] failed_post thread has finished
[2026-01-25 09:11:59] 2026-01-25 14:10:57,762 | INFO     | [payload] control thread has finished
[2026-01-25 09:11:59] 2026-01-25 14:10:57,954 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-25 09:11:59] 2026-01-25 14:10:58,077 | INFO     | [payload] execute_payloads thread has finished
[2026-01-25 09:11:59] 2026-01-25 14:10:58,957 | INFO     | [data] copytool_out thread has finished
[2026-01-25 09:11:59] 2026-01-25 14:11:01,960 | INFO     | [data] queue_monitor thread has finished
[2026-01-25 09:11:59] 2026-01-25 14:11:25,600 | INFO     | PID=28168 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-25 09:11:59] 2026-01-25 14:11:25,600 | INFO     | found 0 job(s) in 20 queues
[2026-01-25 09:11:59] 2026-01-25 14:11:25,600 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-25 09:11:59] 2026-01-25 14:11:25,601 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-25 09:11:59] 2026-01-25 14:11:39,839 [wrapper] supervise_pilot (15 min periods counter: 6)
[2026-01-25 09:11:59] 2026-01-25 14:11:54,072 | INFO     | [monitor] cgroup control has ended
[2026-01-25 09:11:59] 2026-01-25 14:11:54,609 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139898826798912)>', '<ExcThread(monitor, started 139897990002432)>']
[2026-01-25 09:11:59] 2026-01-25 14:11:54,742 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-25 09:11:59] 2026-01-25 14:11:54,742 | INFO     | [monitor] control thread has ended
[2026-01-25 09:11:59] 2026-01-25 14:11:59,634 | INFO     | all workflow threads have been joined
[2026-01-25 09:11:59] 2026-01-25 14:11:59,634 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-25 09:11:59] 2026-01-25 14:11:59,635 | INFO     | traces error code: 0
[2026-01-25 09:11:59] 2026-01-25 14:11:59,635 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-25 09:11:59] 2026-01-25 14:11:59,713 [wrapper] ==== pilot stdout END ====
[2026-01-25 09:11:59] 2026-01-25 14:11:59,717 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-25 09:11:59] 2026-01-25 14:11:59,721 [wrapper] pilotpid: 28168
[2026-01-25 09:11:59] 2026-01-25 14:11:59,725 [wrapper] Pilot exit status: 0
[2026-01-25 09:11:59] 2026-01-25 14:11:59,741 [wrapper] pandaids: 6981241205
[2026-01-25 09:11:59] 2026-01-25 14:11:59,786 [wrapper] cleanup supervisor_pilot 22805 28169
[2026-01-25 09:11:59] 2026-01-25 14:11:59,790 [wrapper] Test setup, not cleaning
[2026-01-25 09:11:59] 2026-01-25 14:11:59,794 [wrapper] apfmon messages muted
[2026-01-25 09:11:59] 2026-01-25 14:11:59,798 [wrapper] ==== wrapper stdout END ====
[2026-01-25 09:11:59] 2026-01-25 14:11:59,801 [wrapper] ==== wrapper stderr END ====
[2026-01-25 09:11:59]  *** Error codes and diagnostics ***
[2026-01-25 09:11:59]     "exeErrorCode": 0,
[2026-01-25 09:11:59]     "exeErrorDiag": "",
[2026-01-25 09:11:59]     "pilotErrorCode": 0,
[2026-01-25 09:11:59]     "pilotErrorDiag": "",
[2026-01-25 09:11:59]  *** Listing of results directory ***
[2026-01-25 09:11:59] total 731916
[2026-01-25 09:11:59] -rw-r--r-- 1 boincer umatlas    584422 Jan 24 09:28 pilot3.tar.gz
[2026-01-25 09:11:59] -rwx------ 1 boincer umatlas     36322 Jan 24 09:30 runpilot2-wrapper.sh
[2026-01-25 09:11:59] -rw-r--r-- 1 boincer umatlas      5111 Jan 24 09:31 queuedata.json
[2026-01-25 09:11:59] -rw-r--r-- 1 boincer umatlas       100 Jan 25 07:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-25 09:11:59] -rwxr-xr-x 1 boincer umatlas      7986 Jan 25 07:56 run_atlas
[2026-01-25 09:11:59] -rw-r--r-- 1 boincer umatlas       105 Jan 25 07:56 job.xml
[2026-01-25 09:11:59] -rw-r--r-- 2 boincer umatlas 544673756 Jan 25 07:56 EVNT.48310836._000020.pool.root.1
[2026-01-25 09:11:59] -rw-r--r-- 2 boincer umatlas     15845 Jan 25 07:56 start_atlas.sh
[2026-01-25 09:11:59] drwxrwx--x 2 boincer umatlas      4096 Jan 25 07:56 shared
[2026-01-25 09:11:59] -rw-r--r-- 2 boincer umatlas    597756 Jan 25 07:56 input.tar.gz
[2026-01-25 09:11:59] -rw-r--r-- 1 boincer umatlas         0 Jan 25 07:56 boinc_lockfile
[2026-01-25 09:11:59] -rw-r--r-- 1 boincer umatlas      2499 Jan 25 07:56 pandaJob.out
[2026-01-25 09:11:59] -rw------- 1 boincer umatlas        57 Jan 25 07:56 setup.sh.local
[2026-01-25 09:11:59] -rw------- 1 boincer umatlas   1004254 Jan 25 07:56 agis_schedconf.cvmfs.json
[2026-01-25 09:11:59] -rw------- 1 boincer umatlas   1516246 Jan 25 07:56 agis_ddmendpoints.agis.ALL.json
[2026-01-25 09:11:59] -rw------- 1 boincer umatlas       445 Jan 25 07:56 workernode_map.json
[2026-01-25 09:11:59] drwx------ 5 boincer umatlas      4096 Jan 25 07:56 pilot3
[2026-01-25 09:11:59] -rw-r--r-- 1 boincer umatlas      5953 Jan 25 09:04 init_data.xml
[2026-01-25 09:11:59] -rw------- 1 boincer umatlas 198765082 Jan 25 09:10 HITS.48310840._000881.pool.root.1
[2026-01-25 09:11:59] -rw------- 1 boincer umatlas        95 Jan 25 09:10 pilot_heartbeat.json
[2026-01-25 09:11:59] -rw------- 1 boincer umatlas      1045 Jan 25 09:10 memory_monitor_summary.json
[2026-01-25 09:11:59] -rw------- 1 boincer umatlas    403308 Jan 25 09:10 log.48310840._000881.job.log.tgz.1
[2026-01-25 09:11:59] -rw------- 1 boincer umatlas      6414 Jan 25 09:10 heartbeat.json
[2026-01-25 09:11:59] -rw-r--r-- 1 boincer umatlas       530 Jan 25 09:10 boinc_task_state.xml
[2026-01-25 09:11:59] -rw-r--r-- 1 boincer umatlas      8192 Jan 25 09:11 boinc_mmap_file
[2026-01-25 09:11:59] -rw-r--r-- 1 boincer umatlas        27 Jan 25 09:11 wrapper_checkpoint.txt
[2026-01-25 09:11:59] -rw------- 1 boincer umatlas      4742 Jan 25 09:11 pilotlog.txt
[2026-01-25 09:11:59] -rw------- 1 boincer umatlas    648158 Jan 25 09:11 log.48310840._000881.job.log.1
[2026-01-25 09:11:59] -rw------- 1 boincer umatlas       357 Jan 25 09:11 output.list
[2026-01-25 09:11:59] -rw-r--r-- 1 boincer umatlas       620 Jan 25 09:11 runtime_log
[2026-01-25 09:11:59] -rw------- 1 boincer umatlas   1064960 Jan 25 09:11 result.tar.gz
[2026-01-25 09:11:59] -rw-r--r-- 1 boincer umatlas      9343 Jan 25 09:11 runtime_log.err
[2026-01-25 09:11:59] -rw------- 1 boincer umatlas       659 Jan 25 09:11 oRqKDmRpt38nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGO5KDmQxk6kn.diag
[2026-01-25 09:11:59] -rw-r--r-- 1 boincer umatlas     21083 Jan 25 09:11 stderr.txt
[2026-01-25 09:11:59] HITS file was successfully produced:
[2026-01-25 09:11:59] -rw------- 1 boincer umatlas 198765082 Jan 25 09:10 shared/HITS.pool.root.1
[2026-01-25 09:11:59]  *** Contents of shared directory: ***
[2026-01-25 09:11:59] total 727664
[2026-01-25 09:11:59] -rw-r--r-- 2 boincer umatlas 544673756 Jan 25 07:56 ATLAS.root_0
[2026-01-25 09:11:59] -rw-r--r-- 2 boincer umatlas     15845 Jan 25 07:56 start_atlas.sh
[2026-01-25 09:11:59] -rw-r--r-- 2 boincer umatlas    597756 Jan 25 07:56 input.tar.gz
[2026-01-25 09:11:59] -rw------- 1 boincer umatlas 198765082 Jan 25 09:10 HITS.pool.root.1
[2026-01-25 09:11:59] -rw------- 1 boincer umatlas   1064960 Jan 25 09:11 result.tar.gz
09:12:01 (24126): run_atlas exited; CPU time 47231.808126
09:12:01 (24126): called boinc_finish(0)

</stderr_txt>
]]>

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