Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:47:39 (27890): wrapper (7.7.26015): starting
20:47:39 (27890): wrapper: running run_atlas (--nthreads 8)
[2026-01-25 20:47:39] Arguments: --nthreads 8
[2026-01-25 20:47:39] Threads: 8
[2026-01-25 20:47:39] Checking for CVMFS
[2026-01-25 20:47:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-25 20:47:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-25 20:47:42] Running cvmfs_config stat atlas.cern.ch
[2026-01-25 20:47:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-25 20:47:43] 2.11.2.0 23879 58894 137044 155519 3 57 22670011 25165825 4016 130560 0 14767865 99.698 16654365 2101 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-25 20:47:43] CVMFS is ok
[2026-01-25 20:47:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-25 20:47:43] Checking for apptainer binary...
[2026-01-25 20:47:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-25 20:47:43] Running /usr/bin/apptainer --version
[2026-01-25 20:47:43] apptainer version 1.3.2-1.el7
[2026-01-25 20:47:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-25 20:48:03] cg-vwn385.simple-grid.lan
[2026-01-25 20:48:03] apptainer works
[2026-01-25 20:48:03] Set ATHENA_PROC_NUMBER=8
[2026-01-25 20:48:03] Set ATHENA_CORE_NUMBER=8
[2026-01-25 20:48:04] Starting ATLAS job with PandaID=6982028771
[2026-01-25 20:48:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 00:42:44]  *** The last 200 lines of the pilot log: ***
[2026-01-26 00:42:44] 2026-01-25 23:41:35,992 | INFO     | job 6982028771 has finished - writing final server update
[2026-01-26 00:42:44] 2026-01-25 23:41:35,993 | INFO     | total number of processed events: 400 (read)
[2026-01-26 00:42:44] 2026-01-25 23:41:35,994 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6982028771/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 00:42:44] 2026-01-25 23:41:35,995 | INFO     | extracted standard info from prmon json
[2026-01-26 00:42:44] 2026-01-25 23:41:35,995 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 00:42:44] 2026-01-25 23:41:35,995 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 00:42:44] 2026-01-25 23:41:35,996 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 00:42:44] 2026-01-25 23:41:35,996 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 00:42:44] 2026-01-25 23:41:36,003 | INFO     | fitting pss+swap vs Time
[2026-01-26 00:42:44] 2026-01-25 23:41:36,004 | INFO     | sum of square deviations: 3346927870.0
[2026-01-26 00:42:44] 2026-01-25 23:41:36,006 | INFO     | sum of deviations: 70062262724.0
[2026-01-26 00:42:44] 2026-01-25 23:41:36,006 | INFO     | mean x: 1769377765.0
[2026-01-26 00:42:44] 2026-01-25 23:41:36,006 | INFO     | mean y: 2431244.153846154
[2026-01-26 00:42:44] 2026-01-25 23:41:36,006 | INFO     | intersect: -37036493598.11768
[2026-01-26 00:42:44] 2026-01-25 23:41:36,007 | INFO     | chi2: 5.170035168556047
[2026-01-26 00:42:44] 2026-01-25 23:41:36,007 | INFO     | sum of square deviations: 3124858590.0
[2026-01-26 00:42:44] 2026-01-25 23:41:36,009 | INFO     | sum of deviations: 82763019898.0
[2026-01-26 00:42:44] 2026-01-25 23:41:36,010 | INFO     | mean x: 1769377612.5
[2026-01-26 00:42:44] 2026-01-25 23:41:36,010 | INFO     | mean y: 2439782.6296296297
[2026-01-26 00:42:44] 2026-01-25 23:41:36,010 | INFO     | intersect: -46860171862.9147
[2026-01-26 00:42:44] 2026-01-25 23:41:36,010 | INFO     | chi2: 4.4326933809852465
[2026-01-26 00:42:44] 2026-01-25 23:41:36,010 | INFO     | current chi2=4.4326933809852465 (change=14.261833111992825 %)
[2026-01-26 00:42:44] 2026-01-25 23:41:36,010 | INFO     | right removable region: 215
[2026-01-26 00:42:44] 2026-01-25 23:41:36,011 | INFO     | sum of square deviations: 3124858590.0
[2026-01-26 00:42:44] 2026-01-25 23:41:36,012 | INFO     | sum of deviations: 295552838.5
[2026-01-26 00:42:44] 2026-01-25 23:41:36,013 | INFO     | mean x: 1769377917.5
[2026-01-26 00:42:44] 2026-01-25 23:41:36,013 | INFO     | mean y: 2479066.6435185187
[2026-01-26 00:42:44] 2026-01-25 23:41:36,013 | INFO     | intersect: -164870799.22556195
[2026-01-26 00:42:44] 2026-01-25 23:41:36,013 | INFO     | chi2: 1.2109687578038835
[2026-01-26 00:42:44] 2026-01-25 23:41:36,013 | INFO     | current chi2=1.2109687578038835 (change=76.57716595103746 %)
[2026-01-26 00:42:44] 2026-01-25 23:41:36,014 | INFO     | sum of square deviations: 2912836010.0
[2026-01-26 00:42:44] 2026-01-25 23:41:36,015 | INFO     | sum of deviations: -15477033887.000002
[2026-01-26 00:42:44] 2026-01-25 23:41:36,016 | INFO     | mean x: 1769378070.0
[2026-01-26 00:42:44] 2026-01-25 23:41:36,016 | INFO     | mean y: 2490284.521327014
[2026-01-26 00:42:44] 2026-01-25 23:41:36,016 | INFO     | intersect: 9403886124.963665
[2026-01-26 00:42:44] 2026-01-25 23:41:36,016 | INFO     | chi2: 0.8498300181839449
[2026-01-26 00:42:44] 2026-01-25 23:41:36,016 | INFO     | current chi2=0.8498300181839449 (change=29.822300310610082 %)
[2026-01-26 00:42:44] 2026-01-25 23:41:36,017 | INFO     | sum of square deviations: 2710627567.5
[2026-01-26 00:42:44] 2026-01-25 23:41:36,018 | INFO     | sum of deviations: -12171085359.5
[2026-01-26 00:42:44] 2026-01-25 23:41:36,018 | INFO     | mean x: 1769378222.5
[2026-01-26 00:42:44] 2026-01-25 23:41:36,019 | INFO     | mean y: 2487749.4514563107
[2026-01-26 00:42:44] 2026-01-25 23:41:36,019 | INFO     | intersect: 7947235909.431897
[2026-01-26 00:42:44] 2026-01-25 23:41:36,019 | INFO     | chi2: 0.827580116222607
[2026-01-26 00:42:44] 2026-01-25 23:41:36,019 | INFO     | current chi2=0.827580116222607 (change=2.618159100673465 %)
[2026-01-26 00:42:44] 2026-01-25 23:41:36,019 | INFO     | left removable region: 30
[2026-01-26 00:42:44] 2026-01-25 23:41:36,020 | INFO     | sum of square deviations: 1963274020.0
[2026-01-26 00:42:44] 2026-01-25 23:41:36,021 | INFO     | sum of deviations: 2832421296.0
[2026-01-26 00:42:44] 2026-01-25 23:41:36,021 | INFO     | mean x: 1769378497.0
[2026-01-26 00:42:44] 2026-01-25 23:41:36,021 | INFO     | mean y: 2497338.3189189187
[2026-01-26 00:42:44] 2026-01-25 23:41:36,021 | INFO     | intersect: -2550190307.1821775
[2026-01-26 00:42:44] 2026-01-25 23:41:36,022 | INFO     | chi2: 0.0009045731566449254
[2026-01-26 00:42:44] 2026-01-25 23:41:36,022 | INFO     | current memory leak: 1.44 B/s (using 185 data points, chi2=0.00)
[2026-01-26 00:42:44] 2026-01-25 23:41:36,022 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2026-01-26 00:42:44] 2026-01-25 23:41:36,023 | INFO     | ..............................
[2026-01-26 00:42:44] 2026-01-25 23:41:36,023 | INFO     | . Timing measurements:
[2026-01-26 00:42:44] 2026-01-25 23:41:36,023 | INFO     | . get job = 0 s
[2026-01-26 00:42:44] 2026-01-25 23:41:36,023 | INFO     | . initial setup = 103 s
[2026-01-26 00:42:44] 2026-01-25 23:41:36,023 | INFO     | . payload setup = 133 s
[2026-01-26 00:42:44] 2026-01-25 23:41:36,023 | INFO     | . stage-in = 0 s
[2026-01-26 00:42:44] 2026-01-25 23:41:36,023 | INFO     | . payload execution = 13542 s
[2026-01-26 00:42:44] 2026-01-25 23:41:36,023 | INFO     | . stage-out = 4 s
[2026-01-26 00:42:44] 2026-01-25 23:41:36,023 | INFO     | . log creation = 1 s
[2026-01-26 00:42:44] 2026-01-25 23:41:36,023 | INFO     | ..............................
[2026-01-26 00:42:44] 2026-01-25 23:41:36,154 | INFO     | 
[2026-01-26 00:42:44] 2026-01-25 23:41:36,155 | INFO     | job summary report
[2026-01-26 00:42:44] 2026-01-25 23:41:36,155 | INFO     | --------------------------------------------------
[2026-01-26 00:42:44] 2026-01-25 23:41:36,155 | INFO     | PanDA job id: 6982028771
[2026-01-26 00:42:44] 2026-01-25 23:41:36,155 | INFO     | task id: 48310826
[2026-01-26 00:42:44] 2026-01-25 23:41:36,155 | INFO     | errors: (none)
[2026-01-26 00:42:44] 2026-01-25 23:41:36,155 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 00:42:44] 2026-01-25 23:41:36,155 | INFO     | pilot state: finished 
[2026-01-26 00:42:44] 2026-01-25 23:41:36,155 | INFO     | transexitcode: 0
[2026-01-26 00:42:44] 2026-01-25 23:41:36,155 | INFO     | exeerrorcode: 0
[2026-01-26 00:42:44] 2026-01-25 23:41:36,156 | INFO     | exeerrordiag: 
[2026-01-26 00:42:44] 2026-01-25 23:41:36,156 | INFO     | exitcode: 0
[2026-01-26 00:42:44] 2026-01-25 23:41:36,156 | INFO     | exitmsg: OK
[2026-01-26 00:42:44] 2026-01-25 23:41:36,156 | INFO     | cpuconsumptiontime: 51720 s
[2026-01-26 00:42:44] 2026-01-25 23:41:36,156 | INFO     | nevents: 400
[2026-01-26 00:42:44] 2026-01-25 23:41:36,156 | INFO     | neventsw: 0
[2026-01-26 00:42:44] 2026-01-25 23:41:36,156 | INFO     | pid: 4112
[2026-01-26 00:42:44] 2026-01-25 23:41:36,156 | INFO     | pgrp: 4112
[2026-01-26 00:42:44] 2026-01-25 23:41:36,156 | INFO     | corecount: 8
[2026-01-26 00:42:44] 2026-01-25 23:41:36,156 | INFO     | event service: False
[2026-01-26 00:42:44] 2026-01-25 23:41:36,157 | INFO     | sizes: {0: 2283809, 1: 2284210, 2: 2284298, 12: 2284298, 13680: 2314558, 13686: 2323558, 13689: 2323742, 13691: 2323936}
[2026-01-26 00:42:44] 2026-01-25 23:41:36,157 | INFO     | --------------------------------------------------
[2026-01-26 00:42:44] 2026-01-25 23:41:36,157 | INFO     | 
[2026-01-26 00:42:44] 2026-01-25 23:41:36,157 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2026-01-26 00:42:44] 2026-01-25 23:41:36,281 | INFO     | time since job start (13704s) is within the limit (349056.0s)
[2026-01-26 00:42:44] 2026-01-25 23:41:36,829 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 00:42:44] 2026-01-25 23:41:36,829 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 00:42:44] 2026-01-25 23:41:36,829 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 00:42:44] 2026-01-25 23:41:36,829 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 00:42:44] 2026-01-25 23:41:36,830 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 00:42:44] 2026-01-25 23:41:36,830 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 00:42:44] 2026-01-25 23:41:36,830 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 00:42:44] 2026-01-25 23:41:36,830 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 00:42:44] 2026-01-25 23:41:36,830 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 00:42:44] 2026-01-25 23:41:36,830 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 00:42:44] 2026-01-25 23:41:36,830 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 00:42:44] 2026-01-25 23:41:36,830 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 00:42:44] 2026-01-25 23:41:36,830 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 00:42:44] 2026-01-25 23:41:36,831 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 00:42:44] 2026-01-25 23:41:36,831 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 00:42:44] 2026-01-25 23:41:36,831 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 00:42:44] 2026-01-25 23:41:36,831 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 00:42:44] 2026-01-25 23:41:36,831 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 00:42:44] 2026-01-25 23:41:36,831 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 00:42:44] 2026-01-25 23:41:36,831 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 00:42:44] 2026-01-25 23:41:36,831 | INFO     | job 6982028771 has completed (purged errors)
[2026-01-26 00:42:44] 2026-01-25 23:41:36,832 | INFO     | overall cleanup function is called
[2026-01-26 00:42:44] 2026-01-25 23:41:37,840 | INFO     | --- collectZombieJob: --- 10, [4112]
[2026-01-26 00:42:44] 2026-01-25 23:41:37,841 | INFO     | zombie collector waiting for pid 4112
[2026-01-26 00:42:44] 2026-01-25 23:41:37,841 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 00:42:44] 2026-01-25 23:41:37,841 | INFO     | collected zombie processes
[2026-01-26 00:42:44] 2026-01-25 23:41:37,841 | INFO     | will attempt to kill all subprocesses of pid=4112
[2026-01-26 00:42:44] 2026-01-25 23:41:37,985 | INFO     | process IDs to be killed: [4112] (in reverse order)
[2026-01-26 00:42:44] 2026-01-25 23:41:38,605 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 00:42:44] 2026-01-25 23:41:38,605 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 00:42:44] 2026-01-25 23:41:38,609 | INFO     | did not find any defunct processes belonging to 4112
[2026-01-26 00:42:44] 2026-01-25 23:41:38,611 | INFO     | did not find any defunct processes belonging to 4112
[2026-01-26 00:42:44] 2026-01-25 23:41:38,612 | INFO     | ready for new job
[2026-01-26 00:42:44] 2026-01-25 23:41:38,612 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 00:42:44] 2026-01-25 23:41:38,614 | INFO     | **************************************
[2026-01-26 00:42:44] 2026-01-25 23:41:38,614 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 00:42:44] 2026-01-25 23:41:38,614 | INFO     | **************************************
[2026-01-26 00:42:44] 2026-01-25 23:41:38,614 | INFO     | 
[2026-01-26 00:42:44] 2026-01-25 23:41:38,615 | INFO     | pilot is running in a VM
[2026-01-26 00:42:44] 2026-01-25 23:41:38,615 | INFO     | architecture information:
[2026-01-26 00:42:44] 2026-01-25 23:41:38,626 | INFO     | executing command: cat /etc/os-release
[2026-01-26 00:42:44] 2026-01-25 23:41:38,868 | INFO     | cat /etc/os-release:
[2026-01-26 00:42:44] NAME="CentOS Linux"
[2026-01-26 00:42:44] VERSION="7 (Core)"
[2026-01-26 00:42:44] ID="centos"
[2026-01-26 00:42:44] ID_LIKE="rhel fedora"
[2026-01-26 00:42:44] VERSION_ID="7"
[2026-01-26 00:42:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 00:42:44] ANSI_COLOR="0;31"
[2026-01-26 00:42:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 00:42:44] HOME_URL="https://www.centos.org/"
[2026-01-26 00:42:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 00:42:44] 
[2026-01-26 00:42:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 00:42:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 00:42:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 00:42:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 00:42:44] 
[2026-01-26 00:42:44] 2026-01-25 23:41:38,868 | INFO     | **************************************
[2026-01-26 00:42:44] 2026-01-25 23:41:39,372 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2026-01-26 00:42:44] 2026-01-25 23:41:39,630 | INFO     | sufficient remaining disk space (496760782848 B)
[2026-01-26 00:42:44] 2026-01-25 23:41:39,631 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 00:42:44] 2026-01-25 23:41:39,631 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 00:42:44] 2026-01-25 23:41:39,631 | INFO     | update_server=False
[2026-01-26 00:42:44] 2026-01-25 23:41:39,631 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 00:42:44] 2026-01-25 23:41:39,631 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 00:42:44] 2026-01-25 23:41:39,827 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 00:42:44] 2026-01-25 23:41:39,828 | INFO     | aborting loop
[2026-01-26 00:42:44] 2026-01-25 23:41:39,844 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 00:42:44] 2026-01-25 23:41:39,856 | INFO     | all payload control threads have been joined
[2026-01-26 00:42:44] 2026-01-25 23:41:40,410 | INFO     | all job control threads have been joined
[2026-01-26 00:42:44] 2026-01-25 23:41:40,485 | INFO     | all data control threads have been joined
[2026-01-26 00:42:44] 2026-01-25 23:41:40,638 | INFO     | [job] retrieve thread has finished
[2026-01-26 00:42:44] 2026-01-25 23:41:40,763 | INFO     | [payload] validate_post thread has finished
[2026-01-26 00:42:44] 2026-01-25 23:41:40,782 | INFO     | [job] validate thread has finished
[2026-01-26 00:42:44] 2026-01-25 23:41:40,782 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 00:42:44] 2026-01-25 23:41:40,833 | INFO     | [job] job monitor thread has finished
[2026-01-26 00:42:44] 2026-01-25 23:41:40,862 | INFO     | [payload] control thread has finished
[2026-01-26 00:42:44] 2026-01-25 23:41:41,104 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 00:42:44] 2026-01-25 23:41:41,168 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 00:42:44] 2026-01-25 23:41:41,271 | INFO     | [data] copytool_in thread has finished
[2026-01-26 00:42:44] 2026-01-25 23:41:41,300 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 00:42:44] 2026-01-25 23:41:41,416 | INFO     | [job] control thread has finished
[2026-01-26 00:42:44] 2026-01-25 23:41:41,487 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 00:42:44] 2026-01-25 23:41:41,491 | INFO     | [data] control thread has finished
[2026-01-26 00:42:44] 2026-01-25 23:41:41,638 | INFO     | [data] copytool_out thread has finished
[2026-01-26 00:42:44] 2026-01-25 23:41:42,174 | INFO     | [job] queue monitor thread has finished
[2026-01-26 00:42:44] 2026-01-25 23:41:42,206 | INFO     | [payload] failed_post thread has finished
[2026-01-26 00:42:44] 2026-01-25 23:41:43,853 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 00:42:44] 2026-01-25 23:42:09,447 | INFO     | PID=31997 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-26 00:42:44] 2026-01-25 23:42:09,447 | INFO     | .. there are 9 such processes running
[2026-01-26 00:42:44] 2026-01-25 23:42:09,448 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 00:42:44] 2026-01-25 23:42:09,448 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 00:42:44] 2026-01-25 23:42:09,448 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 00:42:44] 2026-01-25 23:42:36,043 | INFO     | [monitor] cgroup control has ended
[2026-01-26 00:42:44] 2026-01-25 23:42:36,889 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140217990547264)>', '<ExcThread(monitor, started 140217554020096)>']
[2026-01-26 00:42:44] 2026-01-25 23:42:37,613 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 00:42:44] 2026-01-25 23:42:37,614 | INFO     | [monitor] control thread has ended
[2026-01-26 00:42:44] 2026-01-25 23:42:41,915 | INFO     | all workflow threads have been joined
[2026-01-26 00:42:44] 2026-01-25 23:42:41,916 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 00:42:44] 2026-01-25 23:42:41,916 | INFO     | traces error code: 0
[2026-01-26 00:42:44] 2026-01-25 23:42:41,916 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 00:42:44] 2026-01-25 23:42:42,266 [wrapper] ==== pilot stdout END ====
[2026-01-26 00:42:44] 2026-01-25 23:42:42,349 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 00:42:44] 2026-01-25 23:42:42,434 [wrapper] pilotpid: 31997
[2026-01-26 00:42:44] 2026-01-25 23:42:42,475 [wrapper] Pilot exit status: 0
[2026-01-26 00:42:44] 2026-01-25 23:42:42,855 [wrapper] pandaids: 6982028771
[2026-01-26 00:42:44] 2026-01-25 23:42:42,973 [wrapper] cleanup supervisor_pilot 11670 31998
[2026-01-26 00:42:44] 2026-01-25 23:42:43,048 [wrapper] Test setup, not cleaning
[2026-01-26 00:42:44] 2026-01-25 23:42:43,117 [wrapper] apfmon messages muted
[2026-01-26 00:42:44] 2026-01-25 23:42:43,206 [wrapper] ==== wrapper stdout END ====
[2026-01-26 00:42:44] 2026-01-25 23:42:43,277 [wrapper] ==== wrapper stderr END ====
[2026-01-26 00:42:44]  *** Error codes and diagnostics ***
[2026-01-26 00:42:44]     "exeErrorCode": 0,
[2026-01-26 00:42:44]     "exeErrorDiag": "",
[2026-01-26 00:42:44]     "pilotErrorCode": 0,
[2026-01-26 00:42:44]     "pilotErrorDiag": "",
[2026-01-26 00:42:44]  *** Listing of results directory ***
[2026-01-26 00:42:44] total 669460
[2026-01-26 00:42:44] -rw-r--r--. 1 boinc boinc    584422 Jan 25 03:18 pilot3.tar.gz
[2026-01-26 00:42:44] -rwx------. 1 boinc boinc     36322 Jan 25 03:22 runpilot2-wrapper.sh
[2026-01-26 00:42:44] -rw-r--r--. 1 boinc boinc      5111 Jan 25 03:26 queuedata.json
[2026-01-26 00:42:44] -rw-r--r--. 1 boinc boinc       100 Jan 25 20:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 00:42:44] -rwxr-xr-x. 1 boinc boinc      7986 Jan 25 20:47 run_atlas
[2026-01-26 00:42:44] -rw-r--r--. 1 boinc boinc       105 Jan 25 20:47 job.xml
[2026-01-26 00:42:44] -rw-r--r--. 1 boinc boinc      6392 Jan 25 20:47 init_data.xml
[2026-01-26 00:42:44] -rw-r--r--. 2 boinc boinc 497542962 Jan 25 20:47 EVNT.48310824._000088.pool.root.1
[2026-01-26 00:42:44] -rw-r--r--. 2 boinc boinc     15845 Jan 25 20:47 start_atlas.sh
[2026-01-26 00:42:44] drwxrwx--x. 2 boinc boinc        68 Jan 25 20:47 shared
[2026-01-26 00:42:44] -rw-r--r--. 2 boinc boinc    597756 Jan 25 20:47 input.tar.gz
[2026-01-26 00:42:44] -rw-r--r--. 1 boinc boinc         0 Jan 25 20:47 boinc_lockfile
[2026-01-26 00:42:44] -rw-r--r--. 1 boinc boinc      2523 Jan 25 20:48 pandaJob.out
[2026-01-26 00:42:44] -rw-------. 1 boinc boinc       415 Jan 25 20:53 workernode_map.json
[2026-01-26 00:42:44] -rw-------. 1 boinc boinc   1004246 Jan 25 20:53 agis_schedconf.cvmfs.json
[2026-01-26 00:42:44] drwx------. 5 boinc boinc      4096 Jan 25 20:53 pilot3
[2026-01-26 00:42:44] -rw-------. 1 boinc boinc 179282775 Jan 26 00:40 HITS.48310826._008430.pool.root.1
[2026-01-26 00:42:44] -rw-r--r--. 1 boinc boinc       532 Jan 26 00:40 boinc_task_state.xml
[2026-01-26 00:42:44] -rw-------. 1 boinc boinc      1012 Jan 26 00:41 memory_monitor_summary.json
[2026-01-26 00:42:44] -rw-------. 1 boinc boinc   1516246 Jan 26 00:41 agis_ddmendpoints.agis.ALL.json
[2026-01-26 00:42:44] -rw-------. 1 boinc boinc    461809 Jan 26 00:41 log.48310826._008430.job.log.tgz.1
[2026-01-26 00:42:44] -rw-------. 1 boinc boinc      6315 Jan 26 00:41 heartbeat.json
[2026-01-26 00:42:44] -rw-------. 1 boinc boinc        95 Jan 26 00:42 pilot_heartbeat.json
[2026-01-26 00:42:44] -rw-r--r--. 1 boinc boinc        28 Jan 26 00:42 wrapper_checkpoint.txt
[2026-01-26 00:42:44] -rw-r--r--. 1 boinc boinc      8192 Jan 26 00:42 boinc_mmap_file
[2026-01-26 00:42:44] -rw-------. 1 boinc boinc      4881 Jan 26 00:42 pilotlog.txt
[2026-01-26 00:42:44] -rw-------. 1 boinc boinc   1922775 Jan 26 00:42 log.48310826._008430.job.log.1
[2026-01-26 00:42:44] -rw-------. 1 boinc boinc       357 Jan 26 00:42 output.list
[2026-01-26 00:42:44] -rw-r--r--. 1 boinc boinc       620 Jan 26 00:42 runtime_log
[2026-01-26 00:42:44] -rw-------. 1 boinc boinc   2406400 Jan 26 00:42 result.tar.gz
[2026-01-26 00:42:44] -rw-r--r--. 1 boinc boinc      8832 Jan 26 00:42 runtime_log.err
[2026-01-26 00:42:44] -rw-------. 1 boinc boinc       655 Jan 26 00:42 873LDm9w438nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcZ6KDmaAZ24n.diag
[2026-01-26 00:42:44] -rw-r--r--. 1 boinc boinc     20714 Jan 26 00:42 stderr.txt
[2026-01-26 00:42:44] HITS file was successfully produced:
[2026-01-26 00:42:44] -rw-------. 1 boinc boinc 179282775 Jan 26 00:40 shared/HITS.pool.root.1
[2026-01-26 00:42:44]  *** Contents of shared directory: ***
[2026-01-26 00:42:44] total 663920
[2026-01-26 00:42:44] -rw-r--r--. 2 boinc boinc 497542962 Jan 25 20:47 ATLAS.root_0
[2026-01-26 00:42:44] -rw-r--r--. 2 boinc boinc     15845 Jan 25 20:47 start_atlas.sh
[2026-01-26 00:42:44] -rw-r--r--. 2 boinc boinc    597756 Jan 25 20:47 input.tar.gz
[2026-01-26 00:42:44] -rw-------. 1 boinc boinc 179282775 Jan 26 00:40 HITS.pool.root.1
[2026-01-26 00:42:44] -rw-------. 1 boinc boinc   2406400 Jan 26 00:42 result.tar.gz
00:42:45 (27890): run_atlas exited; CPU time 51938.964961
00:42:45 (27890): called boinc_finish(0)

</stderr_txt>
]]>

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