Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:56:35 (1584558): wrapper (7.7.26015): starting
21:56:35 (1584558): wrapper: running run_atlas (--nthreads 2)
[2026-01-25 21:56:35] Arguments: --nthreads 2
[2026-01-25 21:56:35] Threads: 2
[2026-01-25 21:56:35] Checking for CVMFS
[2026-01-25 21:56:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-25 21:56:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-25 21:56:35] Running cvmfs_config stat atlas.cern.ch
[2026-01-25 21:56:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-25 21:56:35] 2.9.2.0 770802 7231 68456 155520 1 50 21027743 36864000 0 130560 0 2422121 99.983 217167 6164 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-25 21:56:35] CVMFS is ok
[2026-01-25 21:56:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-25 21:56:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-25 21:56:35] Further information can be found at the LHC@home message board.
[2026-01-25 21:56:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-25 21:56:35] Checking for apptainer binary...
[2026-01-25 21:56:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-25 21:56:35] Running /usr/bin/apptainer --version
[2026-01-25 21:56:35] apptainer version 1.4.1-1.1
[2026-01-25 21:56:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-25 21:56:35] thA337
[2026-01-25 21:56:35] apptainer works
[2026-01-25 21:56:35] Set ATHENA_PROC_NUMBER=2
[2026-01-25 21:56:35] Set ATHENA_CORE_NUMBER=2
[2026-01-25 21:56:35] Starting ATLAS job with PandaID=6982374602
[2026-01-25 21:56:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-25 23:52:12]  *** The last 200 lines of the pilot log: ***
[2026-01-25 23:52:12] 2026-01-25 22:51:16,666 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-25 23:52:12] 2026-01-25 22:51:16,666 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-25 23:52:12] 2026-01-25 22:51:16,666 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-25 23:52:12] 2026-01-25 22:51:16,666 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-25 23:52:12] 2026-01-25 22:51:16,666 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-25 23:52:12] 2026-01-25 22:51:16,666 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-25 23:52:12] 2026-01-25 22:51:16,666 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-25 23:52:12] 2026-01-25 22:51:16,666 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-25 23:52:12] 2026-01-25 22:51:16,666 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-25 23:52:12] 2026-01-25 22:51:16,666 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-25 23:52:12] 2026-01-25 22:51:16,666 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-25 23:52:12] 2026-01-25 22:51:16,666 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-25 23:52:12] 2026-01-25 22:51:16,666 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-25 23:52:12] 2026-01-25 22:51:16,666 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-25 23:52:12] 2026-01-25 22:51:16,666 | INFO     | job 6982374602 has completed (purged errors)
[2026-01-25 23:52:12] 2026-01-25 22:51:16,666 | INFO     | overall cleanup function is called
[2026-01-25 23:52:12] 2026-01-25 22:51:17,672 | INFO     | --- collectZombieJob: --- 10, [1592989]
[2026-01-25 23:52:12] 2026-01-25 22:51:17,673 | INFO     | zombie collector waiting for pid 1592989
[2026-01-25 23:52:12] 2026-01-25 22:51:17,673 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-25 23:52:12] 2026-01-25 22:51:17,673 | INFO     | collected zombie processes
[2026-01-25 23:52:12] 2026-01-25 22:51:17,673 | INFO     | will attempt to kill all subprocesses of pid=1592989
[2026-01-25 23:52:12] 2026-01-25 22:51:17,703 | INFO     | process IDs to be killed: [1592989] (in reverse order)
[2026-01-25 23:52:12] 2026-01-25 22:51:17,724 | WARNING  | found no corresponding commands to process id(s)
[2026-01-25 23:52:12] 2026-01-25 22:51:17,724 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-25 23:52:12] 2026-01-25 22:51:17,725 | INFO     | did not find any defunct processes belonging to 1592989
[2026-01-25 23:52:12] 2026-01-25 22:51:17,726 | INFO     | did not find any defunct processes belonging to 1592989
[2026-01-25 23:52:12] 2026-01-25 22:51:17,726 | INFO     | ready for new job
[2026-01-25 23:52:12] 2026-01-25 22:51:17,726 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-25 23:52:12] 2026-01-25 22:51:17,726 | INFO     | **************************************
[2026-01-25 23:52:12] 2026-01-25 22:51:17,726 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-25 23:52:12] 2026-01-25 22:51:17,726 | INFO     | **************************************
[2026-01-25 23:52:12] 2026-01-25 22:51:17,726 | INFO     | 
[2026-01-25 23:52:12] 2026-01-25 22:51:17,726 | INFO     | architecture information:
[2026-01-25 23:52:12] 2026-01-25 22:51:17,727 | INFO     | executing command: cat /etc/os-release
[2026-01-25 23:52:12] 2026-01-25 22:51:17,735 | INFO     | cat /etc/os-release:
[2026-01-25 23:52:12] NAME="CentOS Linux"
[2026-01-25 23:52:12] VERSION="7 (Core)"
[2026-01-25 23:52:12] ID="centos"
[2026-01-25 23:52:12] ID_LIKE="rhel fedora"
[2026-01-25 23:52:12] VERSION_ID="7"
[2026-01-25 23:52:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-25 23:52:12] ANSI_COLOR="0;31"
[2026-01-25 23:52:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-25 23:52:12] HOME_URL="https://www.centos.org/"
[2026-01-25 23:52:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-25 23:52:12] 
[2026-01-25 23:52:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-25 23:52:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-25 23:52:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-25 23:52:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-25 23:52:12] 
[2026-01-25 23:52:12] 2026-01-25 22:51:17,735 | INFO     | **************************************
[2026-01-25 23:52:12] 2026-01-25 22:51:18,236 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-25 23:52:12] 2026-01-25 22:51:18,248 | INFO     | sufficient remaining disk space (488320794624 B)
[2026-01-25 23:52:12] 2026-01-25 22:51:18,248 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-25 23:52:12] 2026-01-25 22:51:18,248 | INFO     | current server update state: UPDATING_FINAL
[2026-01-25 23:52:12] 2026-01-25 22:51:18,248 | INFO     | update_server=False
[2026-01-25 23:52:12] 2026-01-25 22:51:18,248 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-25 23:52:12] 2026-01-25 22:51:18,248 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-25 23:52:12] 2026-01-25 22:51:18,248 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-25 23:52:12] 2026-01-25 22:51:18,248 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-25 23:52:12] 2026-01-25 22:51:18,248 | INFO     | aborting loop
[2026-01-25 23:52:12] 2026-01-25 22:51:18,333 | INFO     | all data control threads have been joined
[2026-01-25 23:52:12] 2026-01-25 22:51:18,481 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-25 23:52:12] 2026-01-25 22:51:18,531 | INFO     | all job control threads have been joined
[2026-01-25 23:52:12] 2026-01-25 22:51:18,840 | INFO     | all payload control threads have been joined
[2026-01-25 23:52:12] 2026-01-25 22:51:19,254 | INFO     | [job] retrieve thread has finished
[2026-01-25 23:52:12] 2026-01-25 22:51:19,254 | INFO     | [job] queue monitor thread has finished
[2026-01-25 23:52:12] 2026-01-25 22:51:19,255 | INFO     | [job] job monitor thread has finished
[2026-01-25 23:52:12] 2026-01-25 22:51:19,339 | INFO     | [data] control thread has finished
[2026-01-25 23:52:12] 2026-01-25 22:51:19,537 | INFO     | [job] control thread has finished
[2026-01-25 23:52:12] 2026-01-25 22:51:19,781 | INFO     | [job] create_data_payload thread has finished
[2026-01-25 23:52:12] 2026-01-25 22:51:19,838 | INFO     | [payload] validate_pre thread has finished
[2026-01-25 23:52:12] 2026-01-25 22:51:19,846 | INFO     | [payload] control thread has finished
[2026-01-25 23:52:12] 2026-01-25 22:51:19,963 | INFO     | [job] validate thread has finished
[2026-01-25 23:52:12] 2026-01-25 22:51:20,129 | INFO     | [payload] failed_post thread has finished
[2026-01-25 23:52:12] 2026-01-25 22:51:20,240 | INFO     | [data] copytool_in thread has finished
[2026-01-25 23:52:12] 2026-01-25 22:51:20,332 | INFO     | [payload] execute_payloads thread has finished
[2026-01-25 23:52:12] 2026-01-25 22:51:20,487 | INFO     | [data] copytool_out thread has finished
[2026-01-25 23:52:12] 2026-01-25 22:51:20,723 | INFO     | [payload] validate_post thread has finished
[2026-01-25 23:52:12] 2026-01-25 22:51:20,750 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-25 23:52:12] 2026-01-25 22:51:22,255 | INFO     | [data] queue_monitor thread has finished
[2026-01-25 23:52:12] 2026-01-25 22:51:49,325 | INFO     | PID=1588583 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-25 23:52:12] 2026-01-25 22:51:49,325 | INFO     | found 0 job(s) in 20 queues
[2026-01-25 23:52:12] 2026-01-25 22:51:49,325 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-25 23:52:12] 2026-01-25 22:51:49,325 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-25 23:52:12] 2026-01-25 22:52:06,154 | INFO     | [monitor] cgroup control has ended
[2026-01-25 23:52:12] 2026-01-25 22:52:07,159 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140191474595648)>', '<ExcThread(monitor, started 140190534326016)>']
[2026-01-25 23:52:12] 2026-01-25 22:52:07,420 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-25 23:52:12] 2026-01-25 22:52:07,421 | INFO     | [monitor] control thread has ended
[2026-01-25 23:52:12] 2026-01-25 22:52:12,185 | INFO     | all workflow threads have been joined
[2026-01-25 23:52:12] 2026-01-25 22:52:12,186 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-25 23:52:12] 2026-01-25 22:52:12,186 | INFO     | traces error code: 0
[2026-01-25 23:52:12] 2026-01-25 22:52:12,187 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-25 23:52:12] 2026-01-25 22:52:12,230 [wrapper] ==== pilot stdout END ====
[2026-01-25 23:52:12] 2026-01-25 22:52:12,233 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-25 23:52:12] 2026-01-25 22:52:12,235 [wrapper] pilotpid: 1588583
[2026-01-25 23:52:12] 2026-01-25 22:52:12,237 [wrapper] Pilot exit status: 0
[2026-01-25 23:52:12] 2026-01-25 22:52:12,242 [wrapper] pandaids: 6982374602
[2026-01-25 23:52:12] 2026-01-25 22:52:12,256 [wrapper] cleanup supervisor_pilot 1597907 1588584
[2026-01-25 23:52:12] 2026-01-25 22:52:12,258 [wrapper] Test setup, not cleaning
[2026-01-25 23:52:12] 2026-01-25 22:52:12,260 [wrapper] apfmon messages muted
[2026-01-25 23:52:12] 2026-01-25 22:52:12,262 [wrapper] ==== wrapper stdout END ====
[2026-01-25 23:52:12] 2026-01-25 22:52:12,264 [wrapper] ==== wrapper stderr END ====
[2026-01-25 23:52:12]  *** Error codes and diagnostics ***
[2026-01-25 23:52:12]     "exeErrorCode": 0,
[2026-01-25 23:52:12]     "exeErrorDiag": "",
[2026-01-25 23:52:12]     "pilotErrorCode": 0,
[2026-01-25 23:52:12]     "pilotErrorDiag": "",
[2026-01-25 23:52:12]  *** Listing of results directory ***
[2026-01-25 23:52:12] total 667908
[2026-01-25 23:52:12] -rw-r--r-- 1 boinc boinc    584422 Jan 25 03:18 pilot3.tar.gz
[2026-01-25 23:52:12] -rwx------ 1 boinc boinc     36322 Jan 25 03:19 runpilot2-wrapper.sh
[2026-01-25 23:52:12] -rw-r--r-- 1 boinc boinc      5111 Jan 25 03:19 queuedata.json
[2026-01-25 23:52:12] -rw-r--r-- 1 boinc boinc       100 Jan 25 21:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-25 23:52:12] -rwxr-xr-x 1 boinc boinc      7986 Jan 25 21:56 run_atlas
[2026-01-25 23:52:12] -rw-r--r-- 1 boinc boinc       105 Jan 25 21:56 job.xml
[2026-01-25 23:52:12] -rw-r--r-- 2 boinc boinc 498699859 Jan 25 21:56 EVNT.48310721._000090.pool.root.1
[2026-01-25 23:52:12] -rw-r--r-- 2 boinc boinc    597754 Jan 25 21:56 input.tar.gz
[2026-01-25 23:52:12] -rw-r--r-- 2 boinc boinc     15845 Jan 25 21:56 start_atlas.sh
[2026-01-25 23:52:12] drwxrwx--x 2 boinc boinc      4096 Jan 25 21:56 shared
[2026-01-25 23:52:12] -rw-r--r-- 1 boinc boinc         0 Jan 25 21:56 boinc_setup_complete
[2026-01-25 23:52:12] -rw-r--r-- 1 boinc boinc      6206 Jan 25 21:56 init_data.xml
[2026-01-25 23:52:12] -rw-r--r-- 1 boinc boinc         0 Jan 25 21:56 boinc_lockfile
[2026-01-25 23:52:12] -rw-r--r-- 1 boinc boinc      2534 Jan 25 21:56 pandaJob.out
[2026-01-25 23:52:12] -rw------- 1 boinc boinc   1004246 Jan 25 21:56 agis_schedconf.cvmfs.json
[2026-01-25 23:52:12] -rw------- 1 boinc boinc   1516246 Jan 25 21:56 agis_ddmendpoints.agis.ALL.json
[2026-01-25 23:52:12] -rw------- 1 boinc boinc       426 Jan 25 21:56 workernode_map.json
[2026-01-25 23:52:12] drwx------ 5 boinc boinc      4096 Jan 25 21:56 pilot3
[2026-01-25 23:52:12] -rw------- 1 boinc boinc 178768536 Jan 25 23:50 HITS.48310724._004478.pool.root.1
[2026-01-25 23:52:12] -rw-r--r-- 1 boinc boinc       530 Jan 25 23:51 boinc_task_state.xml
[2026-01-25 23:52:12] -rw------- 1 boinc boinc      1018 Jan 25 23:51 memory_monitor_summary.json
[2026-01-25 23:52:12] -rw------- 1 boinc boinc    282535 Jan 25 23:51 log.48310724._004478.job.log.tgz.1
[2026-01-25 23:52:12] -rw------- 1 boinc boinc      6302 Jan 25 23:51 heartbeat.json
[2026-01-25 23:52:12] -rw-r--r-- 1 boinc boinc        27 Jan 25 23:51 wrapper_checkpoint.txt
[2026-01-25 23:52:12] -rw-r--r-- 1 boinc boinc      8192 Jan 25 23:51 boinc_mmap_file
[2026-01-25 23:52:12] -rw------- 1 boinc boinc        95 Jan 25 23:51 pilot_heartbeat.json
[2026-01-25 23:52:12] -rw------- 1 boinc boinc      4748 Jan 25 23:52 pilotlog.txt
[2026-01-25 23:52:12] -rw------- 1 boinc boinc    990002 Jan 25 23:52 log.48310724._004478.job.log.1
[2026-01-25 23:52:12] -rw------- 1 boinc boinc       357 Jan 25 23:52 output.list
[2026-01-25 23:52:12] -rw-r--r-- 1 boinc boinc       620 Jan 25 23:52 runtime_log
[2026-01-25 23:52:12] -rw------- 1 boinc boinc   1290240 Jan 25 23:52 result.tar.gz
[2026-01-25 23:52:12] -rw-r--r-- 1 boinc boinc      8896 Jan 25 23:52 runtime_log.err
[2026-01-25 23:52:12] -rw------- 1 boinc boinc       657 Jan 25 23:52 cX6KDmat438nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtT6KDmKr3Lln.diag
[2026-01-25 23:52:12] -rw-r--r-- 1 boinc boinc     12242 Jan 25 23:52 stderr.txt
[2026-01-25 23:52:12] HITS file was successfully produced:
[2026-01-25 23:52:12] -rw------- 1 boinc boinc 178768536 Jan 25 23:50 shared/HITS.pool.root.1
[2026-01-25 23:52:12]  *** Contents of shared directory: ***
[2026-01-25 23:52:12] total 663460
[2026-01-25 23:52:12] -rw-r--r-- 2 boinc boinc 498699859 Jan 25 21:56 ATLAS.root_0
[2026-01-25 23:52:12] -rw-r--r-- 2 boinc boinc    597754 Jan 25 21:56 input.tar.gz
[2026-01-25 23:52:12] -rw-r--r-- 2 boinc boinc     15845 Jan 25 21:56 start_atlas.sh
[2026-01-25 23:52:12] -rw------- 1 boinc boinc 178768536 Jan 25 23:50 HITS.pool.root.1
[2026-01-25 23:52:12] -rw------- 1 boinc boinc   1290240 Jan 25 23:52 result.tar.gz
23:52:14 (1584558): run_atlas exited; CPU time 13326.096577
23:52:14 (1584558): called boinc_finish(0)

</stderr_txt>
]]>

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