Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:01:06 (478275): wrapper (7.7.26015): starting
12:01:06 (478275): wrapper: running run_atlas (--nthreads 4)
[2026-01-26 12:01:06] Arguments: --nthreads 4
[2026-01-26 12:01:06] Threads: 4
[2026-01-26 12:01:06] Checking for CVMFS
[2026-01-26 12:01:06] No cvmfs_config command found, will try listing directly
[2026-01-26 12:01:06] CVMFS is ok
[2026-01-26 12:01:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 12:01:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 12:01:06] Further information can be found at the LHC@home message board.
[2026-01-26 12:01:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 12:01:06] Checking for apptainer binary...
[2026-01-26 12:01:06] which: no apptainer in ((null))
[2026-01-26 12:01:06] apptainer is not installed, using version from CVMFS
[2026-01-26 12:01:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 12:01:07] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2026-01-26 12:01:07] apptainer works
[2026-01-26 12:01:07] Set ATHENA_PROC_NUMBER=4
[2026-01-26 12:01:07] Set ATHENA_CORE_NUMBER=4
[2026-01-26 12:01:07] Starting ATLAS job with PandaID=6982692722
[2026-01-26 12:01:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 14:21:20]  *** The last 200 lines of the pilot log: ***
[2026-01-26 14:21:20] 2026-01-26 13:18:55,997 | INFO     | mean y: 2300410.4
[2026-01-26 14:21:20] 2026-01-26 13:18:55,997 | INFO     | intersect: -42943489865.36039
[2026-01-26 14:21:20] 2026-01-26 13:18:55,998 | INFO     | chi2: 1.2972507233881612
[2026-01-26 14:21:20] 2026-01-26 13:18:55,998 | INFO     | current chi2=1.2972507233881612 (change=-0.10293305968222728 %)
[2026-01-26 14:21:20] 2026-01-26 13:18:55,998 | INFO     | right removable region: 129
[2026-01-26 14:21:20] 2026-01-26 13:18:55,998 | INFO     | sum of square deviations: 681212772.5
[2026-01-26 14:21:20] 2026-01-26 13:18:55,999 | INFO     | sum of deviations: 937254172.4999999
[2026-01-26 14:21:20] 2026-01-26 13:18:55,999 | INFO     | mean x: 1769429553.5
[2026-01-26 14:21:20] 2026-01-26 13:18:55,999 | INFO     | mean y: 2331594.653846154
[2026-01-26 14:21:20] 2026-01-26 13:18:55,999 | INFO     | intersect: -2432157743.936303
[2026-01-26 14:21:20] 2026-01-26 13:18:55,999 | INFO     | chi2: 0.010825552101688122
[2026-01-26 14:21:20] 2026-01-26 13:18:55,999 | INFO     | current chi2=0.010825552101688122 (change=99.16464142371872 %)
[2026-01-26 14:21:20] 2026-01-26 13:18:55,999 | INFO     | sum of square deviations: 605592750.0
[2026-01-26 14:21:20] 2026-01-26 13:18:56,000 | INFO     | sum of deviations: 1025693772.0000001
[2026-01-26 14:21:20] 2026-01-26 13:18:56,000 | INFO     | mean x: 1769429706.0
[2026-01-26 14:21:20] 2026-01-26 13:18:56,000 | INFO     | mean y: 2331353.672
[2026-01-26 14:21:20] 2026-01-26 13:18:56,000 | INFO     | intersect: -2994555629.2649508
[2026-01-26 14:21:20] 2026-01-26 13:18:56,000 | INFO     | chi2: 0.002498486391323039
[2026-01-26 14:21:20] 2026-01-26 13:18:56,001 | INFO     | current chi2=0.002498486391323039 (change=76.92047141934286 %)
[2026-01-26 14:21:20] 2026-01-26 13:18:56,001 | INFO     | sum of square deviations: 535786790.0
[2026-01-26 14:21:20] 2026-01-26 13:18:56,001 | INFO     | sum of deviations: 1326453174.0
[2026-01-26 14:21:20] 2026-01-26 13:18:56,001 | INFO     | mean x: 1769429858.5
[2026-01-26 14:21:20] 2026-01-26 13:18:56,001 | INFO     | mean y: 2330730.1666666665
[2026-01-26 14:21:20] 2026-01-26 13:18:56,002 | INFO     | intersect: -4378265984.391555
[2026-01-26 14:21:20] 2026-01-26 13:18:56,002 | INFO     | chi2: 0.00014674284754016804
[2026-01-26 14:21:20] 2026-01-26 13:18:56,002 | INFO     | current chi2=0.00014674284754016804 (change=94.12673016551985 %)
[2026-01-26 14:21:20] 2026-01-26 13:18:56,002 | INFO     | sum of square deviations: 471562330.0
[2026-01-26 14:21:20] 2026-01-26 13:18:56,003 | INFO     | sum of deviations: 1054464726.9999999
[2026-01-26 14:21:20] 2026-01-26 13:18:56,003 | INFO     | mean x: 1769430011.0
[2026-01-26 14:21:20] 2026-01-26 13:18:56,003 | INFO     | mean y: 2331374.304347826
[2026-01-26 14:21:20] 2026-01-26 13:18:56,003 | INFO     | intersect: -3954306836.1623826
[2026-01-26 14:21:20] 2026-01-26 13:18:56,003 | INFO     | chi2: 0.00010175538307011612
[2026-01-26 14:21:20] 2026-01-26 13:18:56,003 | INFO     | current chi2=0.00010175538307011612 (change=30.657347342082524 %)
[2026-01-26 14:21:20] 2026-01-26 13:18:56,003 | INFO     | sum of square deviations: 412686807.5
[2026-01-26 14:21:20] 2026-01-26 13:18:56,004 | INFO     | sum of deviations: 877839623.4999998
[2026-01-26 14:21:20] 2026-01-26 13:18:56,004 | INFO     | mean x: 1769430163.5
[2026-01-26 14:21:20] 2026-01-26 13:18:56,004 | INFO     | mean y: 2331830.809090909
[2026-01-26 14:21:20] 2026-01-26 13:18:56,004 | INFO     | intersect: -3761481017.83978
[2026-01-26 14:21:20] 2026-01-26 13:18:56,004 | INFO     | chi2: 9.256825557910337e-05
[2026-01-26 14:21:20] 2026-01-26 13:18:56,005 | INFO     | current chi2=9.256825557910337e-05 (change=9.028640268281645 %)
[2026-01-26 14:21:20] 2026-01-26 13:18:56,005 | INFO     | left removable region: 50
[2026-01-26 14:21:20] 2026-01-26 13:18:56,005 | INFO     | sum of square deviations: 152858680.0
[2026-01-26 14:21:20] 2026-01-26 13:18:56,005 | INFO     | sum of deviations: 322359258.0
[2026-01-26 14:21:20] 2026-01-26 13:18:56,005 | INFO     | mean x: 1769430743.0
[2026-01-26 14:21:20] 2026-01-26 13:18:56,005 | INFO     | mean y: 2333319.9367088606
[2026-01-26 14:21:20] 2026-01-26 13:18:56,005 | INFO     | intersect: -3729168099.517317
[2026-01-26 14:21:20] 2026-01-26 13:18:56,006 | INFO     | chi2: 7.425108116688591e-05
[2026-01-26 14:21:20] 2026-01-26 13:18:56,006 | INFO     | current memory leak: 2.11 B/s (using 79 data points, chi2=0.00)
[2026-01-26 14:21:20] 2026-01-26 13:18:56,006 | INFO     | could have reported an average CPU frequency of 2709 MHz (8 samples)
[2026-01-26 14:21:20] 2026-01-26 13:18:56,006 | INFO     | ..............................
[2026-01-26 14:21:20] 2026-01-26 13:18:56,006 | INFO     | . Timing measurements:
[2026-01-26 14:21:20] 2026-01-26 13:18:56,006 | INFO     | . get job = 0 s
[2026-01-26 14:21:20] 2026-01-26 13:18:56,007 | INFO     | . initial setup = 7 s
[2026-01-26 14:21:20] 2026-01-26 13:18:56,007 | INFO     | . payload setup = 8 s
[2026-01-26 14:21:20] 2026-01-26 13:18:56,007 | INFO     | . stage-in = 0 s
[2026-01-26 14:21:20] 2026-01-26 13:18:56,007 | INFO     | . payload execution = 8220 s
[2026-01-26 14:21:20] 2026-01-26 13:18:56,007 | INFO     | . stage-out = 0 s
[2026-01-26 14:21:20] 2026-01-26 13:18:56,007 | INFO     | . log creation = 0 s
[2026-01-26 14:21:20] 2026-01-26 13:18:56,007 | INFO     | ..............................
[2026-01-26 14:21:20] 2026-01-26 13:18:56,094 | INFO     | 
[2026-01-26 14:21:20] 2026-01-26 13:18:56,094 | INFO     | job summary report
[2026-01-26 14:21:20] 2026-01-26 13:18:56,094 | INFO     | --------------------------------------------------
[2026-01-26 14:21:20] 2026-01-26 13:18:56,094 | INFO     | PanDA job id: 6982692722
[2026-01-26 14:21:20] 2026-01-26 13:18:56,094 | INFO     | task id: 48310826
[2026-01-26 14:21:20] 2026-01-26 13:18:56,094 | INFO     | errors: (none)
[2026-01-26 14:21:20] 2026-01-26 13:18:56,094 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 14:21:20] 2026-01-26 13:18:56,094 | INFO     | pilot state: finished 
[2026-01-26 14:21:20] 2026-01-26 13:18:56,094 | INFO     | transexitcode: 0
[2026-01-26 14:21:20] 2026-01-26 13:18:56,094 | INFO     | exeerrorcode: 0
[2026-01-26 14:21:20] 2026-01-26 13:18:56,095 | INFO     | exeerrordiag: 
[2026-01-26 14:21:20] 2026-01-26 13:18:56,095 | INFO     | exitcode: 0
[2026-01-26 14:21:20] 2026-01-26 13:18:56,095 | INFO     | exitmsg: OK
[2026-01-26 14:21:20] 2026-01-26 13:18:56,095 | INFO     | cpuconsumptiontime: 31205 s
[2026-01-26 14:21:20] 2026-01-26 13:18:56,095 | INFO     | nevents: 400
[2026-01-26 14:21:20] 2026-01-26 13:18:56,095 | INFO     | neventsw: 0
[2026-01-26 14:21:20] 2026-01-26 13:18:56,095 | INFO     | pid: 487250
[2026-01-26 14:21:20] 2026-01-26 13:18:56,095 | INFO     | pgrp: 487250
[2026-01-26 14:21:20] 2026-01-26 13:18:56,095 | INFO     | corecount: 4
[2026-01-26 14:21:20] 2026-01-26 13:18:56,095 | INFO     | event service: False
[2026-01-26 14:21:20] 2026-01-26 13:18:56,095 | INFO     | sizes: {0: 2283995, 1: 2284257, 11: 2284285, 8233: 2312530, 8234: 2321608, 8237: 2321746}
[2026-01-26 14:21:20] 2026-01-26 13:18:56,095 | INFO     | --------------------------------------------------
[2026-01-26 14:21:20] 2026-01-26 13:18:56,095 | INFO     | 
[2026-01-26 14:21:20] 2026-01-26 13:18:56,096 | INFO     | executing command: ls -lF /scratch/boinc/var/slot116/slots/0
[2026-01-26 14:21:20] 2026-01-26 13:18:56,122 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 14:21:20] 2026-01-26 13:18:56,122 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 14:21:20] 2026-01-26 13:18:56,122 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 14:21:20] 2026-01-26 13:18:56,123 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 14:21:20] 2026-01-26 13:18:56,123 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 14:21:20] 2026-01-26 13:18:56,123 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 14:21:20] 2026-01-26 13:18:56,123 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 14:21:20] 2026-01-26 13:18:56,123 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 14:21:20] 2026-01-26 13:18:56,123 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 14:21:20] 2026-01-26 13:18:56,123 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 14:21:20] 2026-01-26 13:18:56,123 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 14:21:20] 2026-01-26 13:18:56,124 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 14:21:20] 2026-01-26 13:18:56,124 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 14:21:20] 2026-01-26 13:18:56,124 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 14:21:20] 2026-01-26 13:18:56,124 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 14:21:20] 2026-01-26 13:18:56,124 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 14:21:20] 2026-01-26 13:18:56,124 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 14:21:20] 2026-01-26 13:18:56,124 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 14:21:20] 2026-01-26 13:18:56,124 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 14:21:20] 2026-01-26 13:18:56,125 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 14:21:20] 2026-01-26 13:18:56,125 | INFO     | job 6982692722 has completed (purged errors)
[2026-01-26 14:21:20] 2026-01-26 13:18:56,125 | INFO     | overall cleanup function is called
[2026-01-26 14:21:20] 2026-01-26 13:18:57,039 | WARNING  | process 487250 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 14:21:20] 2026-01-26 13:18:57,135 | INFO     | --- collectZombieJob: --- 10, [487250]
[2026-01-26 14:21:20] 2026-01-26 13:18:57,136 | INFO     | zombie collector waiting for pid 487250
[2026-01-26 14:21:20] 2026-01-26 13:18:57,136 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 14:21:20] 2026-01-26 13:18:57,136 | INFO     | collected zombie processes
[2026-01-26 14:21:20] 2026-01-26 13:18:57,136 | INFO     | will attempt to kill all subprocesses of pid=487250
[2026-01-26 14:21:20] 2026-01-26 13:18:58,640 | INFO     | using path: /scratch/boinc/var/slot116/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 14:21:20] 2026-01-26 13:18:59,289 | INFO     | process IDs to be killed: [487250] (in reverse order)
[2026-01-26 14:21:20] 2026-01-26 13:18:59,562 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 14:21:20] 2026-01-26 13:18:59,563 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 14:21:20] 2026-01-26 13:18:59,631 | INFO     | did not find any defunct processes belonging to 487250
[2026-01-26 14:21:20] 2026-01-26 13:18:59,700 | INFO     | did not find any defunct processes belonging to 487250
[2026-01-26 14:21:20] 2026-01-26 13:18:59,701 | INFO     | ready for new job
[2026-01-26 14:21:20] 2026-01-26 13:18:59,701 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 14:21:20] 2026-01-26 13:18:59,703 | INFO     | **************************************
[2026-01-26 14:21:20] 2026-01-26 13:18:59,703 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 14:21:20] 2026-01-26 13:18:59,703 | INFO     | **************************************
[2026-01-26 14:21:20] 2026-01-26 13:18:59,703 | INFO     | 
[2026-01-26 14:21:20] 2026-01-26 13:18:59,713 | INFO     | architecture information:
[2026-01-26 14:21:20] 2026-01-26 13:18:59,714 | INFO     | executing command: cat /etc/os-release
[2026-01-26 14:21:20] 2026-01-26 13:18:59,739 | INFO     | cat /etc/os-release:
[2026-01-26 14:21:20] NAME="CentOS Linux"
[2026-01-26 14:21:20] VERSION="7 (Core)"
[2026-01-26 14:21:20] ID="centos"
[2026-01-26 14:21:20] ID_LIKE="rhel fedora"
[2026-01-26 14:21:20] VERSION_ID="7"
[2026-01-26 14:21:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 14:21:20] ANSI_COLOR="0;31"
[2026-01-26 14:21:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 14:21:20] HOME_URL="https://www.centos.org/"
[2026-01-26 14:21:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 14:21:20] 
[2026-01-26 14:21:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 14:21:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 14:21:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 14:21:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 14:21:20] 
[2026-01-26 14:21:20] 2026-01-26 13:18:59,740 | INFO     | **************************************
[2026-01-26 14:21:20] 2026-01-26 13:18:59,919 | INFO     | number of running child processes to parent process 487250: 1
[2026-01-26 14:21:20] 2026-01-26 13:18:59,919 | INFO     | maximum number of monitored processes: 6
[2026-01-26 14:21:20] 2026-01-26 13:18:59,919 | INFO     | aborting job monitoring since job object (job id=6982692722) has expired
[2026-01-26 14:21:20] 2026-01-26 13:19:00,243 | INFO     | executing command: df -mP /scratch/boinc/var/slot116/slots/0
[2026-01-26 14:21:20] 2026-01-26 13:19:00,268 | INFO     | sufficient remaining disk space (3188554989568 B)
[2026-01-26 14:21:20] 2026-01-26 13:19:00,268 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 14:21:20] 2026-01-26 13:19:00,268 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 14:21:20] 2026-01-26 13:19:00,269 | INFO     | update_server=False
[2026-01-26 14:21:20] 2026-01-26 13:19:00,269 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 14:21:20] 2026-01-26 13:19:00,269 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 14:21:20] 2026-01-26 13:19:00,269 | INFO     | will abort loop
[2026-01-26 14:21:20] 2026-01-26 13:19:00,590 | INFO     | all job control threads have been joined
[2026-01-26 14:21:20] 2026-01-26 13:19:00,643 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 14:21:20] 2026-01-26 13:19:00,978 | INFO     | all data control threads have been joined
[2026-01-26 14:21:20] 2026-01-26 13:19:01,104 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 14:21:20] 2026-01-26 13:19:01,270 | INFO     | [job] job monitor thread has finished
[2026-01-26 14:21:20] 2026-01-26 13:19:01,274 | INFO     | [job] retrieve thread has finished
[2026-01-26 14:21:20] 2026-01-26 13:19:01,569 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 14:21:20] 2026-01-26 13:19:01,596 | INFO     | [job] control thread has finished
[2026-01-26 14:21:20] 2026-01-26 13:19:01,617 | INFO     | all payload control threads have been joined
[2026-01-26 14:21:20] 2026-01-26 13:19:01,658 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 14:21:20] 2026-01-26 13:19:01,700 | INFO     | [data] copytool_in thread has finished
[2026-01-26 14:21:20] 2026-01-26 13:19:01,983 | INFO     | [data] control thread has finished
[2026-01-26 14:21:20] 2026-01-26 13:19:02,109 | INFO     | [job] queue monitor thread has finished
[2026-01-26 14:21:20] 2026-01-26 13:19:02,274 | INFO     | [job] validate thread has finished
[2026-01-26 14:21:20] 2026-01-26 13:19:02,353 | INFO     | [payload] validate_post thread has finished
[2026-01-26 14:21:20] 2026-01-26 13:19:02,619 | INFO     | [payload] control thread has finished
[2026-01-26 14:21:20] 2026-01-26 13:19:02,649 | INFO     | [data] copytool_out thread has finished
[2026-01-26 14:21:20] 2026-01-26 13:19:02,650 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 14:21:20] 2026-01-26 13:19:02,746 | INFO     | [payload] failed_post thread has finished
[2026-01-26 14:21:20] 2026-01-26 13:19:03,237 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 14:21:20] 2026-01-26 13:19:07,243 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 14:21:20] 2026-01-26 13:19:10,817 | INFO     | job.realtimelogging is not enabled
[2026-01-26 14:21:20] 2026-01-26 13:19:11,822 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 14:21:20] 2026-01-26 13:19:28,570 | INFO     | PID=482265 has CPU usage=17.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 14:21:20] 2026-01-26 13:19:28,570 | INFO     | .. there are 8 such processes running
[2026-01-26 14:21:20] 2026-01-26 13:19:28,571 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 14:21:20] 2026-01-26 13:19:28,571 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 14:21:20] 2026-01-26 13:19:28,571 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 14:21:20] 2026-01-26 13:19:39,783 | INFO     | [monitor] cgroup control has ended
[2026-01-26 14:21:20] 2026-01-26 13:19:41,154 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22449408902976)>', '<ExcThread(monitor, started 22449164125952)>']
[2026-01-26 14:21:20] 2026-01-26 13:19:41,632 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 14:21:20] 2026-01-26 13:19:41,635 | INFO     | [monitor] control thread has ended
[2026-01-26 14:21:20] 2026-01-26 13:19:46,179 | INFO     | all workflow threads have been joined
[2026-01-26 14:21:20] 2026-01-26 13:19:46,179 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 14:21:20] 2026-01-26 13:19:46,179 | INFO     | traces error code: 0
[2026-01-26 14:21:20] 2026-01-26 13:19:46,180 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 14:21:20] 2026-01-26 13:19:46,328 [wrapper] ==== pilot stdout END ====
[2026-01-26 14:21:20] 2026-01-26 13:19:46,332 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 14:21:20] 2026-01-26 13:19:46,336 [wrapper] pilotpid: 482265
[2026-01-26 14:21:20] 2026-01-26 13:19:46,340 [wrapper] Pilot exit status: 0
[2026-01-26 14:21:20] 2026-01-26 13:19:46,355 [wrapper] pandaids: 6982692722
[2026-01-26 14:21:20] 2026-01-26 13:19:46,530 [wrapper] cleanup supervisor_pilot  650109 482266
[2026-01-26 14:21:20] 2026-01-26 13:19:46,534 [wrapper] Test setup, not cleaning
[2026-01-26 14:21:20] 2026-01-26 13:19:46,538 [wrapper] apfmon messages muted
[2026-01-26 14:21:20] 2026-01-26 13:19:46,542 [wrapper] ==== wrapper stdout END ====
[2026-01-26 14:21:20] 2026-01-26 13:19:46,545 [wrapper] ==== wrapper stderr END ====
[2026-01-26 14:21:20]  *** Error codes and diagnostics ***
[2026-01-26 14:21:20]     "exeErrorCode": 0,
[2026-01-26 14:21:20]     "exeErrorDiag": "",
[2026-01-26 14:21:20]     "pilotErrorCode": 0,
[2026-01-26 14:21:20]     "pilotErrorDiag": "",
[2026-01-26 14:21:20]  *** Listing of results directory ***
[2026-01-26 14:21:20] total 660440
[2026-01-26 14:21:20] -rwx------ 1 boinc boinc     36322 Jan 25 07:28 runpilot2-wrapper.sh
[2026-01-26 14:21:20] -rw-r--r-- 1 boinc boinc    584422 Jan 25 07:28 pilot3.tar.gz
[2026-01-26 14:21:20] -rw-r--r-- 1 boinc boinc      5111 Jan 25 07:29 queuedata.json
[2026-01-26 14:21:20] -rw-r--r-- 1 boinc boinc       100 Jan 26 12:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 14:21:20] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 12:01 run_atlas
[2026-01-26 14:21:20] -rw-r--r-- 1 boinc boinc       105 Jan 26 12:01 job.xml
[2026-01-26 14:21:20] -rw-r--r-- 1 boinc boinc      6692 Jan 26 12:01 init_data.xml
[2026-01-26 14:21:20] -rw-r--r-- 2 boinc boinc 491291769 Jan 26 12:01 EVNT.48310824._000033.pool.root.1
[2026-01-26 14:21:20] -rw-r--r-- 2 boinc boinc     15845 Jan 26 12:01 start_atlas.sh
[2026-01-26 14:21:20] drwxrwx--x 2 boinc boinc      4096 Jan 26 12:01 shared
[2026-01-26 14:21:20] -rw-r--r-- 2 boinc boinc    597759 Jan 26 12:01 input.tar.gz
[2026-01-26 14:21:20] -rw-r--r-- 1 boinc boinc         0 Jan 26 12:01 boinc_lockfile
[2026-01-26 14:21:20] -rw-r--r-- 1 boinc boinc      2525 Jan 26 12:01 pandaJob.out
[2026-01-26 14:21:20] -rw------- 1 boinc boinc   1004246 Jan 26 12:01 agis_schedconf.cvmfs.json
[2026-01-26 14:21:20] -rw------- 1 boinc boinc   1516246 Jan 26 12:01 agis_ddmendpoints.agis.ALL.json
[2026-01-26 14:21:20] -rw------- 1 boinc boinc       440 Jan 26 12:01 workernode_map.json
[2026-01-26 14:21:20] drwx------ 5 boinc boinc      4096 Jan 26 12:01 pilot3
[2026-01-26 14:21:20] -rw------- 1 boinc boinc 178024610 Jan 26 14:18 HITS.48310826._010400.pool.root.1
[2026-01-26 14:21:20] -rw------- 1 boinc boinc        95 Jan 26 14:18 pilot_heartbeat.json
[2026-01-26 14:21:20] -rw-r--r-- 1 boinc boinc       528 Jan 26 14:18 boinc_task_state.xml
[2026-01-26 14:21:20] -rw------- 1 boinc boinc      1029 Jan 26 14:18 memory_monitor_summary.json
[2026-01-26 14:21:20] -rw------- 1 boinc boinc    347815 Jan 26 14:18 log.48310826._010400.job.log.tgz.1
[2026-01-26 14:21:20] -rw------- 1 boinc boinc      6347 Jan 26 14:18 heartbeat.json
[2026-01-26 14:21:20] -rw------- 1 boinc boinc      5192 Jan 26 14:19 pilotlog.txt
[2026-01-26 14:21:20] -rw------- 1 boinc boinc   1166082 Jan 26 14:19 log.48310826._010400.job.log.1
[2026-01-26 14:21:20] -rw------- 1 boinc boinc       357 Jan 26 14:19 output.list
[2026-01-26 14:21:20] -rw-r--r-- 1 boinc boinc       620 Jan 26 14:19 runtime_log
[2026-01-26 14:21:20] -rw------- 1 boinc boinc   1536000 Jan 26 14:19 result.tar.gz
[2026-01-26 14:21:20] -rw------- 1 boinc boinc       662 Jan 26 14:19 yysMDmdm838nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmY16KDmbelMLm.diag
[2026-01-26 14:21:20] -rw-r--r-- 1 boinc boinc      9221 Jan 26 14:19 runtime_log.err
[2026-01-26 14:21:20] -rw-r--r-- 1 boinc boinc        26 Jan 26 14:21 wrapper_checkpoint.txt
[2026-01-26 14:21:20] -rw-r--r-- 1 boinc boinc      8192 Jan 26 14:21 boinc_mmap_file
[2026-01-26 14:21:20] -rw-r--r-- 1 boinc boinc     20849 Jan 26 14:21 stderr.txt
[2026-01-26 14:21:20] HITS file was successfully produced:
[2026-01-26 14:21:20] -rw------- 1 boinc boinc 178024610 Jan 26 14:18 shared/HITS.pool.root.1
[2026-01-26 14:21:20]  *** Contents of shared directory: ***
[2026-01-26 14:21:20] total 655744
[2026-01-26 14:21:20] -rw-r--r-- 2 boinc boinc 491291769 Jan 26 12:01 ATLAS.root_0
[2026-01-26 14:21:20] -rw-r--r-- 2 boinc boinc     15845 Jan 26 12:01 start_atlas.sh
[2026-01-26 14:21:20] -rw-r--r-- 2 boinc boinc    597759 Jan 26 12:01 input.tar.gz
[2026-01-26 14:21:20] -rw------- 1 boinc boinc 178024610 Jan 26 14:18 HITS.pool.root.1
[2026-01-26 14:21:20] -rw------- 1 boinc boinc   1536000 Jan 26 14:19 result.tar.gz
14:21:21 (478275): run_atlas exited; CPU time 31695.490295
14:21:21 (478275): called boinc_finish(0)

</stderr_txt>
]]>

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