Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:43:33 (12566): wrapper (7.7.26015): starting
18:43:33 (12566): wrapper: running run_atlas (--nthreads 8)
[2026-01-25 18:43:33] Arguments: --nthreads 8
[2026-01-25 18:43:33] Threads: 8
[2026-01-25 18:43:33] Checking for CVMFS
[2026-01-25 18:43:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-25 18:43:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-25 18:43:35] Running cvmfs_config stat atlas.cern.ch
[2026-01-25 18:43:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-25 18:43:36] 2.11.2.0 4234 58771 133632 155516 1 56 16423664 25165825 899 130560 0 22059610 99.833 15268213 1540 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-25 18:43:36] CVMFS is ok
[2026-01-25 18:43:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-25 18:43:36] Checking for apptainer binary...
[2026-01-25 18:43:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-25 18:43:36] Running /usr/bin/apptainer --version
[2026-01-25 18:43:36] apptainer version 1.3.2-1.el7
[2026-01-25 18:43:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-25 18:44:07] cg-vwn359.simple-grid.lan
[2026-01-25 18:44:07] apptainer works
[2026-01-25 18:44:07] Set ATHENA_PROC_NUMBER=8
[2026-01-25 18:44:07] Set ATHENA_CORE_NUMBER=8
[2026-01-25 18:44:07] Starting ATLAS job with PandaID=6981423408
[2026-01-25 18:44:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-25 23:16:52]  *** The last 200 lines of the pilot log: ***
[2026-01-25 23:16:52] 2026-01-25 22:15:45,024 | INFO     | total number of processed events: 400 (read)
[2026-01-25 23:16:52] 2026-01-25 22:15:45,026 | INFO     | using path: /var/lib/boinc/slots/14/PanDA_Pilot-6981423408/memory_monitor_summary.json (trf name=prmon)
[2026-01-25 23:16:52] 2026-01-25 22:15:45,026 | INFO     | extracted standard info from prmon json
[2026-01-25 23:16:52] 2026-01-25 22:15:45,027 | INFO     | extracted standard memory fields from prmon json
[2026-01-25 23:16:52] 2026-01-25 22:15:45,027 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-25 23:16:52] 2026-01-25 22:15:45,027 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-25 23:16:52] 2026-01-25 22:15:45,027 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-25 23:16:52] 2026-01-25 22:15:45,031 | INFO     | fitting pss+swap vs Time
[2026-01-25 23:16:52] 2026-01-25 22:15:45,032 | INFO     | sum of square deviations: 5263458688.0
[2026-01-25 23:16:52] 2026-01-25 22:15:45,034 | INFO     | sum of deviations: 147969997626.00003
[2026-01-25 23:16:52] 2026-01-25 22:15:45,034 | INFO     | mean x: 1769371518.0
[2026-01-25 23:16:52] 2026-01-25 22:15:45,034 | INFO     | mean y: 2414825.0622568093
[2026-01-25 23:16:52] 2026-01-25 22:15:45,034 | INFO     | intersect: -49739383265.77745
[2026-01-25 23:16:52] 2026-01-25 22:15:45,035 | INFO     | chi2: 8.664660545738721
[2026-01-25 23:16:52] 2026-01-25 22:15:45,035 | INFO     | sum of square deviations: 4962187923.0
[2026-01-25 23:16:52] 2026-01-25 22:15:45,037 | INFO     | sum of deviations: 161566064793.0
[2026-01-25 23:16:52] 2026-01-25 22:15:45,037 | INFO     | mean x: 1769371365.5
[2026-01-25 23:16:52] 2026-01-25 22:15:45,037 | INFO     | mean y: 2421572.0396825396
[2026-01-25 23:16:52] 2026-01-25 22:15:45,037 | INFO     | intersect: -57607320968.388466
[2026-01-25 23:16:52] 2026-01-25 22:15:45,038 | INFO     | chi2: 7.965441163994673
[2026-01-25 23:16:52] 2026-01-25 22:15:45,038 | INFO     | current chi2=7.965441163994673 (change=8.0697839003967 %)
[2026-01-25 23:16:52] 2026-01-25 22:15:45,038 | INFO     | right removable region: 251
[2026-01-25 23:16:52] 2026-01-25 22:15:45,039 | INFO     | sum of square deviations: 4962187923.0
[2026-01-25 23:16:52] 2026-01-25 22:15:45,041 | INFO     | sum of deviations: 58717401990.50002
[2026-01-25 23:16:52] 2026-01-25 22:15:45,044 | INFO     | mean x: 1769371670.5
[2026-01-25 23:16:52] 2026-01-25 22:15:45,044 | INFO     | mean y: 2459978.527777778
[2026-01-25 23:16:52] 2026-01-25 22:15:45,044 | INFO     | intersect: -20934455200.72249
[2026-01-25 23:16:52] 2026-01-25 22:15:45,045 | INFO     | chi2: 3.6082401750169755
[2026-01-25 23:16:52] 2026-01-25 22:15:45,045 | INFO     | current chi2=3.6082401750169755 (change=58.356820143502254 %)
[2026-01-25 23:16:52] 2026-01-25 22:15:45,045 | INFO     | sum of square deviations: 4672638308.0
[2026-01-25 23:16:52] 2026-01-25 22:15:45,048 | INFO     | sum of deviations: -8632281409.999996
[2026-01-25 23:16:52] 2026-01-25 22:15:45,048 | INFO     | mean x: 1769371823.0
[2026-01-25 23:16:52] 2026-01-25 22:15:45,048 | INFO     | mean y: 2495400.4372469634
[2026-01-25 23:16:52] 2026-01-25 22:15:45,048 | INFO     | intersect: 3271251612.2995377
[2026-01-25 23:16:52] 2026-01-25 22:15:45,048 | INFO     | chi2: 0.9315648230117621
[2026-01-25 23:16:52] 2026-01-25 22:15:45,048 | INFO     | current chi2=0.9315648230117621 (change=74.1822944752457 %)
[2026-01-25 23:16:52] 2026-01-25 22:15:45,049 | INFO     | sum of square deviations: 4394577280.5
[2026-01-25 23:16:52] 2026-01-25 22:15:45,051 | INFO     | sum of deviations: -15781195533.5
[2026-01-25 23:16:52] 2026-01-25 22:15:45,051 | INFO     | mean x: 1769371975.5
[2026-01-25 23:16:52] 2026-01-25 22:15:45,051 | INFO     | mean y: 2499264.285123967
[2026-01-25 23:16:52] 2026-01-25 22:15:45,051 | INFO     | intersect: 6356422141.182105
[2026-01-25 23:16:52] 2026-01-25 22:15:45,051 | INFO     | chi2: 0.8535568565101984
[2026-01-25 23:16:52] 2026-01-25 22:15:45,051 | INFO     | current chi2=0.8535568565101984 (change=8.373863479447719 %)
[2026-01-25 23:16:52] 2026-01-25 22:15:45,051 | INFO     | left removable region: 30
[2026-01-25 23:16:52] 2026-01-25 22:15:45,052 | INFO     | sum of square deviations: 3346927870.0
[2026-01-25 23:16:52] 2026-01-25 22:15:45,053 | INFO     | sum of deviations: 8900777850.999998
[2026-01-25 23:16:52] 2026-01-25 22:15:45,054 | INFO     | mean x: 1769372250.0
[2026-01-25 23:16:52] 2026-01-25 22:15:45,054 | INFO     | mean y: 2502974.1900452487
[2026-01-25 23:16:52] 2026-01-25 22:15:45,054 | INFO     | intersect: -4702943317.060334
[2026-01-25 23:16:52] 2026-01-25 22:15:45,054 | INFO     | chi2: 0.0007425804774693916
[2026-01-25 23:16:52] 2026-01-25 22:15:45,054 | INFO     | current memory leak: 2.66 B/s (using 221 data points, chi2=0.00)
[2026-01-25 23:16:52] 2026-01-25 22:15:45,055 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2026-01-25 23:16:52] 2026-01-25 22:15:45,055 | INFO     | ..............................
[2026-01-25 23:16:52] 2026-01-25 22:15:45,059 | INFO     | . Timing measurements:
[2026-01-25 23:16:52] 2026-01-25 22:15:45,059 | INFO     | . get job = 0 s
[2026-01-25 23:16:52] 2026-01-25 22:15:45,059 | INFO     | . initial setup = 122 s
[2026-01-25 23:16:52] 2026-01-25 22:15:45,059 | INFO     | . payload setup = 152 s
[2026-01-25 23:16:52] 2026-01-25 22:15:45,060 | INFO     | . stage-in = 0 s
[2026-01-25 23:16:52] 2026-01-25 22:15:45,060 | INFO     | . payload execution = 15754 s
[2026-01-25 23:16:52] 2026-01-25 22:15:45,060 | INFO     | . stage-out = 3 s
[2026-01-25 23:16:52] 2026-01-25 22:15:45,060 | INFO     | . log creation = 1 s
[2026-01-25 23:16:52] 2026-01-25 22:15:45,060 | INFO     | ..............................
[2026-01-25 23:16:52] 2026-01-25 22:15:45,186 | INFO     | 
[2026-01-25 23:16:52] 2026-01-25 22:15:45,186 | INFO     | job summary report
[2026-01-25 23:16:52] 2026-01-25 22:15:45,186 | INFO     | --------------------------------------------------
[2026-01-25 23:16:52] 2026-01-25 22:15:45,186 | INFO     | PanDA job id: 6981423408
[2026-01-25 23:16:52] 2026-01-25 22:15:45,186 | INFO     | task id: 48318018
[2026-01-25 23:16:52] 2026-01-25 22:15:45,187 | INFO     | errors: (none)
[2026-01-25 23:16:52] 2026-01-25 22:15:45,187 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-25 23:16:52] 2026-01-25 22:15:45,187 | INFO     | pilot state: finished 
[2026-01-25 23:16:52] 2026-01-25 22:15:45,187 | INFO     | transexitcode: 0
[2026-01-25 23:16:52] 2026-01-25 22:15:45,187 | INFO     | exeerrorcode: 0
[2026-01-25 23:16:52] 2026-01-25 22:15:45,187 | INFO     | exeerrordiag: 
[2026-01-25 23:16:52] 2026-01-25 22:15:45,187 | INFO     | exitcode: 0
[2026-01-25 23:16:52] 2026-01-25 22:15:45,187 | INFO     | exitmsg: OK
[2026-01-25 23:16:52] 2026-01-25 22:15:45,187 | INFO     | cpuconsumptiontime: 59432 s
[2026-01-25 23:16:52] 2026-01-25 22:15:45,187 | INFO     | nevents: 400
[2026-01-25 23:16:52] 2026-01-25 22:15:45,188 | INFO     | neventsw: 0
[2026-01-25 23:16:52] 2026-01-25 22:15:45,188 | INFO     | pid: 21259
[2026-01-25 23:16:52] 2026-01-25 22:15:45,188 | INFO     | pgrp: 21259
[2026-01-25 23:16:52] 2026-01-25 22:15:45,188 | INFO     | corecount: 8
[2026-01-25 23:16:52] 2026-01-25 22:15:45,188 | INFO     | event service: False
[2026-01-25 23:16:52] 2026-01-25 22:15:45,188 | INFO     | sizes: {0: 2283140, 1: 2284199, 2: 2284287, 13: 2284287, 15910: 2315611, 15914: 2324611, 15915: 2324989}
[2026-01-25 23:16:52] 2026-01-25 22:15:45,188 | INFO     | --------------------------------------------------
[2026-01-25 23:16:52] 2026-01-25 22:15:45,188 | INFO     | 
[2026-01-25 23:16:52] 2026-01-25 22:15:45,188 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2026-01-25 23:16:52] 2026-01-25 22:15:45,676 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-25 23:16:52] 2026-01-25 22:15:45,676 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-25 23:16:52] 2026-01-25 22:15:45,677 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-25 23:16:52] 2026-01-25 22:15:45,677 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-25 23:16:52] 2026-01-25 22:15:45,677 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-25 23:16:52] 2026-01-25 22:15:45,677 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-25 23:16:52] 2026-01-25 22:15:45,677 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-25 23:16:52] 2026-01-25 22:15:45,677 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-25 23:16:52] 2026-01-25 22:15:45,677 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-25 23:16:52] 2026-01-25 22:15:45,677 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-25 23:16:52] 2026-01-25 22:15:45,677 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-25 23:16:52] 2026-01-25 22:15:45,678 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-25 23:16:52] 2026-01-25 22:15:45,678 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-25 23:16:52] 2026-01-25 22:15:45,678 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-25 23:16:52] 2026-01-25 22:15:45,678 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-25 23:16:52] 2026-01-25 22:15:45,678 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-25 23:16:52] 2026-01-25 22:15:45,678 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-25 23:16:52] 2026-01-25 22:15:45,678 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-25 23:16:52] 2026-01-25 22:15:45,678 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-25 23:16:52] 2026-01-25 22:15:45,679 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-25 23:16:52] 2026-01-25 22:15:45,679 | INFO     | job 6981423408 has completed (purged errors)
[2026-01-25 23:16:52] 2026-01-25 22:15:45,679 | INFO     | overall cleanup function is called
[2026-01-25 23:16:52] 2026-01-25 22:15:46,688 | INFO     | --- collectZombieJob: --- 10, [21259]
[2026-01-25 23:16:52] 2026-01-25 22:15:46,688 | INFO     | zombie collector waiting for pid 21259
[2026-01-25 23:16:52] 2026-01-25 22:15:46,689 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-25 23:16:52] 2026-01-25 22:15:46,689 | INFO     | collected zombie processes
[2026-01-25 23:16:52] 2026-01-25 22:15:46,689 | INFO     | will attempt to kill all subprocesses of pid=21259
[2026-01-25 23:16:52] 2026-01-25 22:15:46,776 | INFO     | process IDs to be killed: [21259] (in reverse order)
[2026-01-25 23:16:52] 2026-01-25 22:15:47,497 | WARNING  | found no corresponding commands to process id(s)
[2026-01-25 23:16:52] 2026-01-25 22:15:47,497 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-25 23:16:52] 2026-01-25 22:15:47,499 | INFO     | did not find any defunct processes belonging to 21259
[2026-01-25 23:16:52] 2026-01-25 22:15:47,501 | INFO     | did not find any defunct processes belonging to 21259
[2026-01-25 23:16:52] 2026-01-25 22:15:47,501 | INFO     | ready for new job
[2026-01-25 23:16:52] 2026-01-25 22:15:47,502 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-25 23:16:52] 2026-01-25 22:15:47,504 | INFO     | **************************************
[2026-01-25 23:16:52] 2026-01-25 22:15:47,504 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-25 23:16:52] 2026-01-25 22:15:47,505 | INFO     | **************************************
[2026-01-25 23:16:52] 2026-01-25 22:15:47,505 | INFO     | 
[2026-01-25 23:16:52] 2026-01-25 22:15:47,506 | INFO     | pilot is running in a VM
[2026-01-25 23:16:52] 2026-01-25 22:15:47,506 | INFO     | architecture information:
[2026-01-25 23:16:52] 2026-01-25 22:15:47,506 | INFO     | executing command: cat /etc/os-release
[2026-01-25 23:16:52] 2026-01-25 22:15:47,860 | INFO     | cat /etc/os-release:
[2026-01-25 23:16:52] NAME="CentOS Linux"
[2026-01-25 23:16:52] VERSION="7 (Core)"
[2026-01-25 23:16:52] ID="centos"
[2026-01-25 23:16:52] ID_LIKE="rhel fedora"
[2026-01-25 23:16:52] VERSION_ID="7"
[2026-01-25 23:16:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-25 23:16:52] ANSI_COLOR="0;31"
[2026-01-25 23:16:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-25 23:16:52] HOME_URL="https://www.centos.org/"
[2026-01-25 23:16:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-25 23:16:52] 
[2026-01-25 23:16:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-25 23:16:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-25 23:16:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-25 23:16:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-25 23:16:52] 
[2026-01-25 23:16:52] 2026-01-25 22:15:47,860 | INFO     | **************************************
[2026-01-25 23:16:52] 2026-01-25 22:15:48,363 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2026-01-25 23:16:52] 2026-01-25 22:15:48,622 | INFO     | sufficient remaining disk space (495673409536 B)
[2026-01-25 23:16:52] 2026-01-25 22:15:48,622 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-25 23:16:52] 2026-01-25 22:15:48,622 | INFO     | current server update state: UPDATING_FINAL
[2026-01-25 23:16:52] 2026-01-25 22:15:48,622 | INFO     | update_server=False
[2026-01-25 23:16:52] 2026-01-25 22:15:48,622 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-25 23:16:52] 2026-01-25 22:15:49,023 | INFO     | all data control threads have been joined
[2026-01-25 23:16:52] 2026-01-25 22:15:49,072 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-25 23:16:52] 2026-01-25 22:15:49,072 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-25 23:16:52] 2026-01-25 22:15:49,073 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-25 23:16:52] 2026-01-25 22:15:49,073 | INFO     | will abort loop
[2026-01-25 23:16:52] 2026-01-25 22:15:49,628 | INFO     | [job] retrieve thread has finished
[2026-01-25 23:16:52] 2026-01-25 22:15:49,713 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-25 23:16:52] 2026-01-25 22:15:49,847 | INFO     | all job control threads have been joined
[2026-01-25 23:16:52] 2026-01-25 22:15:49,848 | INFO     | all payload control threads have been joined
[2026-01-25 23:16:52] 2026-01-25 22:15:50,024 | INFO     | [job] validate thread has finished
[2026-01-25 23:16:52] 2026-01-25 22:15:50,029 | INFO     | [data] control thread has finished
[2026-01-25 23:16:52] 2026-01-25 22:15:50,039 | INFO     | [payload] execute_payloads thread has finished
[2026-01-25 23:16:52] 2026-01-25 22:15:50,078 | INFO     | [job] job monitor thread has finished
[2026-01-25 23:16:52] 2026-01-25 22:15:50,205 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-25 23:16:52] 2026-01-25 22:15:50,291 | INFO     | [payload] failed_post thread has finished
[2026-01-25 23:16:52] 2026-01-25 22:15:50,526 | INFO     | [data] copytool_in thread has finished
[2026-01-25 23:16:52] 2026-01-25 22:15:50,536 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-25 23:16:52] 2026-01-25 22:15:50,681 | INFO     | [job] create_data_payload thread has finished
[2026-01-25 23:16:52] 2026-01-25 22:15:50,701 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-25 23:16:52] 2026-01-25 22:15:50,757 | INFO     | [payload] validate_post thread has finished
[2026-01-25 23:16:52] 2026-01-25 22:15:50,833 | INFO     | [payload] validate_pre thread has finished
[2026-01-25 23:16:52] 2026-01-25 22:15:50,853 | INFO     | [job] control thread has finished
[2026-01-25 23:16:52] 2026-01-25 22:15:50,854 | INFO     | [payload] control thread has finished
[2026-01-25 23:16:52] 2026-01-25 22:15:51,211 | INFO     | [job] queue monitor thread has finished
[2026-01-25 23:16:52] 2026-01-25 22:15:51,720 | INFO     | [data] copytool_out thread has finished
[2026-01-25 23:16:52] 2026-01-25 22:15:54,710 | INFO     | [data] queue_monitor thread has finished
[2026-01-25 23:16:52] 2026-01-25 22:16:17,444 | INFO     | PID=16726 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-25 23:16:52] 2026-01-25 22:16:17,444 | INFO     | .. there are 2 such processes running
[2026-01-25 23:16:52] 2026-01-25 22:16:17,445 | INFO     | found 0 job(s) in 20 queues
[2026-01-25 23:16:52] 2026-01-25 22:16:17,445 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-25 23:16:52] 2026-01-25 22:16:17,445 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-25 23:16:52] 2026-01-25 22:16:43,383 | INFO     | [monitor] cgroup control has ended
[2026-01-25 23:16:52] 2026-01-25 22:16:44,373 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140388280313664)>', '<ExcThread(monitor, started 140387674990336)>']
[2026-01-25 23:16:52] 2026-01-25 22:16:44,608 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-25 23:16:52] 2026-01-25 22:16:44,608 | INFO     | [monitor] control thread has ended
[2026-01-25 23:16:52] 2026-01-25 22:16:49,399 | INFO     | all workflow threads have been joined
[2026-01-25 23:16:52] 2026-01-25 22:16:49,399 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-25 23:16:52] 2026-01-25 22:16:49,400 | INFO     | traces error code: 0
[2026-01-25 23:16:52] 2026-01-25 22:16:49,400 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-25 23:16:52] 2026-01-25 22:16:49,915 [wrapper] ==== pilot stdout END ====
[2026-01-25 23:16:52] 2026-01-25 22:16:50,028 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-25 23:16:52] 2026-01-25 22:16:50,131 [wrapper] pilotpid: 16726
[2026-01-25 23:16:52] 2026-01-25 22:16:50,223 [wrapper] Pilot exit status: 0
[2026-01-25 23:16:52] 2026-01-25 22:16:50,296 [wrapper] pandaids: 6981423408
[2026-01-25 23:16:52] 2026-01-25 22:16:50,440 [wrapper] cleanup supervisor_pilot 27336 16727
[2026-01-25 23:16:52] 2026-01-25 22:16:50,500 [wrapper] Test setup, not cleaning
[2026-01-25 23:16:52] 2026-01-25 22:16:50,505 [wrapper] apfmon messages muted
[2026-01-25 23:16:52] 2026-01-25 22:16:50,508 [wrapper] ==== wrapper stdout END ====
[2026-01-25 23:16:52] 2026-01-25 22:16:50,511 [wrapper] ==== wrapper stderr END ====
[2026-01-25 23:16:52]  *** Error codes and diagnostics ***
[2026-01-25 23:16:52]     "exeErrorCode": 0,
[2026-01-25 23:16:52]     "exeErrorDiag": "",
[2026-01-25 23:16:52]     "pilotErrorCode": 0,
[2026-01-25 23:16:52]     "pilotErrorDiag": "",
[2026-01-25 23:16:52]  *** Listing of results directory ***
[2026-01-25 23:16:52] total 673176
[2026-01-25 23:16:52] -rw-r--r--. 1 boinc boinc    584422 Jan 24 20:29 pilot3.tar.gz
[2026-01-25 23:16:52] -rwx------. 1 boinc boinc     36322 Jan 24 20:29 runpilot2-wrapper.sh
[2026-01-25 23:16:52] -rw-r--r--. 1 boinc boinc      5111 Jan 24 20:30 queuedata.json
[2026-01-25 23:16:52] -rw-r--r--. 1 boinc boinc       100 Jan 25 18:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-25 23:16:52] -rwxr-xr-x. 1 boinc boinc      7986 Jan 25 18:43 run_atlas
[2026-01-25 23:16:52] -rw-r--r--. 1 boinc boinc       105 Jan 25 18:43 job.xml
[2026-01-25 23:16:52] -rw-r--r--. 1 boinc boinc      6393 Jan 25 18:43 init_data.xml
[2026-01-25 23:16:52] -rw-r--r--. 2 boinc boinc 496547080 Jan 25 18:43 EVNT.48318016._000006.pool.root.1
[2026-01-25 23:16:52] -rw-r--r--. 2 boinc boinc     15845 Jan 25 18:43 start_atlas.sh
[2026-01-25 23:16:52] drwxrwx--x. 2 boinc boinc        68 Jan 25 18:43 shared
[2026-01-25 23:16:52] -rw-r--r--. 2 boinc boinc    597753 Jan 25 18:43 input.tar.gz
[2026-01-25 23:16:52] -rw-r--r--. 1 boinc boinc         0 Jan 25 18:43 boinc_lockfile
[2026-01-25 23:16:52] -rw-r--r--. 1 boinc boinc      2515 Jan 25 18:44 pandaJob.out
[2026-01-25 23:16:52] -rw-------. 1 boinc boinc       415 Jan 25 18:50 workernode_map.json
[2026-01-25 23:16:52] -rw-------. 1 boinc boinc   1004246 Jan 25 18:50 agis_schedconf.cvmfs.json
[2026-01-25 23:16:52] drwx------. 5 boinc boinc      4096 Jan 25 18:50 pilot3
[2026-01-25 23:16:52] -rw-------. 1 boinc boinc 183378831 Jan 25 23:14 HITS.48318018._000467.pool.root.1
[2026-01-25 23:16:52] -rw-r--r--. 1 boinc boinc       531 Jan 25 23:14 boinc_task_state.xml
[2026-01-25 23:16:52] -rw-------. 1 boinc boinc      1014 Jan 25 23:15 memory_monitor_summary.json
[2026-01-25 23:16:52] -rw-------. 1 boinc boinc        95 Jan 25 23:15 pilot_heartbeat.json
[2026-01-25 23:16:52] -rw-------. 1 boinc boinc   1516246 Jan 25 23:15 agis_ddmendpoints.agis.ALL.json
[2026-01-25 23:16:52] -rw-------. 1 boinc boinc    491915 Jan 25 23:15 log.48318018._000467.job.log.tgz.1
[2026-01-25 23:16:52] -rw-------. 1 boinc boinc      6312 Jan 25 23:15 heartbeat.json
[2026-01-25 23:16:52] -rw-r--r--. 1 boinc boinc      8192 Jan 25 23:16 boinc_mmap_file
[2026-01-25 23:16:52] -rw-r--r--. 1 boinc boinc        28 Jan 25 23:16 wrapper_checkpoint.txt
[2026-01-25 23:16:52] -rw-------. 1 boinc boinc      5067 Jan 25 23:16 pilotlog.txt
[2026-01-25 23:16:52] -rw-------. 1 boinc boinc   2246465 Jan 25 23:16 log.48318018._000467.job.log.1
[2026-01-25 23:16:52] -rw-------. 1 boinc boinc       357 Jan 25 23:16 output.list
[2026-01-25 23:16:52] -rw-r--r--. 1 boinc boinc       620 Jan 25 23:16 runtime_log
[2026-01-25 23:16:52] -rw-------. 1 boinc boinc   2754560 Jan 25 23:16 result.tar.gz
[2026-01-25 23:16:52] -rw-r--r--. 1 boinc boinc      8832 Jan 25 23:16 runtime_log.err
[2026-01-25 23:16:52] -rw-------. 1 boinc boinc       655 Jan 25 23:16 5cAODmbVy38n9Rq4apOajLDm4fhM0noT9bVo0NGKDms7yKDmQfWuqm.diag
[2026-01-25 23:16:52] -rw-r--r--. 1 boinc boinc     20709 Jan 25 23:16 stderr.txt
[2026-01-25 23:16:53] HITS file was successfully produced:
[2026-01-25 23:16:53] -rw-------. 1 boinc boinc 183378831 Jan 25 23:14 shared/HITS.pool.root.1
[2026-01-25 23:16:53]  *** Contents of shared directory: ***
[2026-01-25 23:16:53] total 667288
[2026-01-25 23:16:53] -rw-r--r--. 2 boinc boinc 496547080 Jan 25 18:43 ATLAS.root_0
[2026-01-25 23:16:53] -rw-r--r--. 2 boinc boinc     15845 Jan 25 18:43 start_atlas.sh
[2026-01-25 23:16:53] -rw-r--r--. 2 boinc boinc    597753 Jan 25 18:43 input.tar.gz
[2026-01-25 23:16:53] -rw-------. 1 boinc boinc 183378831 Jan 25 23:14 HITS.pool.root.1
[2026-01-25 23:16:53] -rw-------. 1 boinc boinc   2754560 Jan 25 23:16 result.tar.gz
23:16:54 (12566): run_atlas exited; CPU time 59601.887435
23:16:54 (12566): called boinc_finish(0)

</stderr_txt>
]]>

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