Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:56:02 (30318): wrapper (7.7.26015): starting
15:56:02 (30318): wrapper: running run_atlas (--nthreads 8)
[2026-01-25 15:56:02] Arguments: --nthreads 8
[2026-01-25 15:56:02] Threads: 8
[2026-01-25 15:56:02] Checking for CVMFS
[2026-01-25 15:56:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-25 15:56:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-25 15:56:04] Running cvmfs_config stat atlas.cern.ch
[2026-01-25 15:56:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-25 15:56:06] 2.11.2.0 23802 58604 132756 155511 0 54 21107803 25165824 1060 130560 0 20239244 99.807 15175048 3187 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-25 15:56:06] CVMFS is ok
[2026-01-25 15:56:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-25 15:56:06] Checking for apptainer binary...
[2026-01-25 15:56:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-25 15:56:06] Running /usr/bin/apptainer --version
[2026-01-25 15:56:06] apptainer version 1.3.2-1.el7
[2026-01-25 15:56:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-25 15:56:28] cg-vwn426.simple-grid.lan
[2026-01-25 15:56:28] apptainer works
[2026-01-25 15:56:28] Set ATHENA_PROC_NUMBER=8
[2026-01-25 15:56:28] Set ATHENA_CORE_NUMBER=8
[2026-01-25 15:56:28] Starting ATLAS job with PandaID=6982020251
[2026-01-25 15:56:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-25 20:06:59]  *** The last 200 lines of the pilot log: ***
[2026-01-25 20:06:59] 2026-01-25 19:06:01,492 | INFO     | job 6982020251 has finished - writing final server update
[2026-01-25 20:06:59] 2026-01-25 19:06:01,492 | INFO     | total number of processed events: 400 (read)
[2026-01-25 20:06:59] 2026-01-25 19:06:01,495 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6982020251/memory_monitor_summary.json (trf name=prmon)
[2026-01-25 20:06:59] 2026-01-25 19:06:01,495 | INFO     | extracted standard info from prmon json
[2026-01-25 20:06:59] 2026-01-25 19:06:01,495 | INFO     | extracted standard memory fields from prmon json
[2026-01-25 20:06:59] 2026-01-25 19:06:01,496 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-25 20:06:59] 2026-01-25 19:06:01,496 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-25 20:06:59] 2026-01-25 19:06:01,496 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-25 20:06:59] 2026-01-25 19:06:01,501 | INFO     | fitting pss+swap vs Time
[2026-01-25 20:06:59] 2026-01-25 19:06:01,502 | INFO     | sum of square deviations: 4024149870.0
[2026-01-25 20:06:59] 2026-01-25 19:06:01,504 | INFO     | sum of deviations: 105645422736.0
[2026-01-25 20:06:59] 2026-01-25 19:06:01,504 | INFO     | mean x: 1769360790.0
[2026-01-25 20:06:59] 2026-01-25 19:06:01,504 | INFO     | mean y: 2427380.8085106383
[2026-01-25 20:06:59] 2026-01-25 19:06:01,504 | INFO     | intersect: -46448344750.11437
[2026-01-25 20:06:59] 2026-01-25 19:06:01,505 | INFO     | chi2: 7.312643085822786
[2026-01-25 20:06:59] 2026-01-25 19:06:01,505 | INFO     | sum of square deviations: 3772712597.5
[2026-01-25 20:06:59] 2026-01-25 19:06:01,507 | INFO     | sum of deviations: 119217545878.0
[2026-01-25 20:06:59] 2026-01-25 19:06:01,507 | INFO     | mean x: 1769360637.5
[2026-01-25 20:06:59] 2026-01-25 19:06:01,508 | INFO     | mean y: 2435444.156521739
[2026-01-25 20:06:59] 2026-01-25 19:06:01,508 | INFO     | intersect: -55909279939.53395
[2026-01-25 20:06:59] 2026-01-25 19:06:01,508 | INFO     | chi2: 6.541573139055335
[2026-01-25 20:06:59] 2026-01-25 19:06:01,508 | INFO     | current chi2=6.541573139055335 (change=10.544339956401599 %)
[2026-01-25 20:06:59] 2026-01-25 19:06:01,512 | INFO     | right removable region: 229
[2026-01-25 20:06:59] 2026-01-25 19:06:01,513 | INFO     | sum of square deviations: 3772712597.5
[2026-01-25 20:06:59] 2026-01-25 19:06:01,515 | INFO     | sum of deviations: 26666363408.500004
[2026-01-25 20:06:59] 2026-01-25 19:06:01,515 | INFO     | mean x: 1769360942.5
[2026-01-25 20:06:59] 2026-01-25 19:06:01,515 | INFO     | mean y: 2475241.9782608696
[2026-01-25 20:06:59] 2026-01-25 19:06:01,516 | INFO     | intersect: -12503757521.359362
[2026-01-25 20:06:59] 2026-01-25 19:06:01,516 | INFO     | chi2: 2.7033784901534696
[2026-01-25 20:06:59] 2026-01-25 19:06:01,516 | INFO     | current chi2=2.7033784901534696 (change=63.03144487668787 %)
[2026-01-25 20:06:59] 2026-01-25 19:06:01,517 | INFO     | sum of square deviations: 3531973200.0
[2026-01-25 20:06:59] 2026-01-25 19:06:01,518 | INFO     | sum of deviations: -22053907304.0
[2026-01-25 20:06:59] 2026-01-25 19:06:01,519 | INFO     | mean x: 1769361095.0
[2026-01-25 20:06:59] 2026-01-25 19:06:01,519 | INFO     | mean y: 2506002.1555555556
[2026-01-25 20:06:59] 2026-01-25 19:06:01,519 | INFO     | intersect: 11050530255.690079
[2026-01-25 20:06:59] 2026-01-25 19:06:01,519 | INFO     | chi2: 0.9486762160644986
[2026-01-25 20:06:59] 2026-01-25 19:06:01,520 | INFO     | current chi2=0.9486762160644986 (change=64.90775451828638 %)
[2026-01-25 20:06:59] 2026-01-25 19:06:01,520 | INFO     | sum of square deviations: 3301699115.0
[2026-01-25 20:06:59] 2026-01-25 19:06:01,522 | INFO     | sum of deviations: -28729433062.5
[2026-01-25 20:06:59] 2026-01-25 19:06:01,522 | INFO     | mean x: 1769361247.5
[2026-01-25 20:06:59] 2026-01-25 19:06:01,522 | INFO     | mean y: 2510364.477272727
[2026-01-25 20:06:59] 2026-01-25 19:06:01,522 | INFO     | intersect: 15398445533.885569
[2026-01-25 20:06:59] 2026-01-25 19:06:01,523 | INFO     | chi2: 0.8692391734246739
[2026-01-25 20:06:59] 2026-01-25 19:06:01,523 | INFO     | current chi2=0.8692391734246739 (change=8.373462019461432 %)
[2026-01-25 20:06:59] 2026-01-25 19:06:01,523 | INFO     | left removable region: 30
[2026-01-25 20:06:59] 2026-01-25 19:06:01,523 | INFO     | sum of square deviations: 2443580700.0
[2026-01-25 20:06:59] 2026-01-25 19:06:01,525 | INFO     | sum of deviations: -10992763213.000002
[2026-01-25 20:06:59] 2026-01-25 19:06:01,525 | INFO     | mean x: 1769361522.0
[2026-01-25 20:06:59] 2026-01-25 19:06:01,525 | INFO     | mean y: 2519248.6934673367
[2026-01-25 20:06:59] 2026-01-25 19:06:01,525 | INFO     | intersect: 7962220456.654101
[2026-01-25 20:06:59] 2026-01-25 19:06:01,526 | INFO     | chi2: 0.015817574460298082
[2026-01-25 20:06:59] 2026-01-25 19:06:01,526 | INFO     | current memory leak: -4.50 B/s (using 199 data points, chi2=0.02)
[2026-01-25 20:06:59] 2026-01-25 19:06:01,527 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2026-01-25 20:06:59] 2026-01-25 19:06:01,527 | INFO     | ..............................
[2026-01-25 20:06:59] 2026-01-25 19:06:01,527 | INFO     | . Timing measurements:
[2026-01-25 20:06:59] 2026-01-25 19:06:01,527 | INFO     | . get job = 0 s
[2026-01-25 20:06:59] 2026-01-25 19:06:01,527 | INFO     | . initial setup = 116 s
[2026-01-25 20:06:59] 2026-01-25 19:06:01,527 | INFO     | . payload setup = 171 s
[2026-01-25 20:06:59] 2026-01-25 19:06:01,527 | INFO     | . stage-in = 0 s
[2026-01-25 20:06:59] 2026-01-25 19:06:01,528 | INFO     | . payload execution = 14422 s
[2026-01-25 20:06:59] 2026-01-25 19:06:01,528 | INFO     | . stage-out = 4 s
[2026-01-25 20:06:59] 2026-01-25 19:06:01,528 | INFO     | . log creation = 1 s
[2026-01-25 20:06:59] 2026-01-25 19:06:01,528 | INFO     | ..............................
[2026-01-25 20:06:59] 2026-01-25 19:06:01,910 | INFO     | 
[2026-01-25 20:06:59] 2026-01-25 19:06:01,911 | INFO     | job summary report
[2026-01-25 20:06:59] 2026-01-25 19:06:01,911 | INFO     | --------------------------------------------------
[2026-01-25 20:06:59] 2026-01-25 19:06:01,911 | INFO     | PanDA job id: 6982020251
[2026-01-25 20:06:59] 2026-01-25 19:06:01,911 | INFO     | task id: 48310840
[2026-01-25 20:06:59] 2026-01-25 19:06:01,911 | INFO     | errors: (none)
[2026-01-25 20:06:59] 2026-01-25 19:06:01,911 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-25 20:06:59] 2026-01-25 19:06:01,911 | INFO     | pilot state: finished 
[2026-01-25 20:06:59] 2026-01-25 19:06:01,912 | INFO     | transexitcode: 0
[2026-01-25 20:06:59] 2026-01-25 19:06:01,912 | INFO     | exeerrorcode: 0
[2026-01-25 20:06:59] 2026-01-25 19:06:01,912 | INFO     | exeerrordiag: 
[2026-01-25 20:06:59] 2026-01-25 19:06:01,912 | INFO     | exitcode: 0
[2026-01-25 20:06:59] 2026-01-25 19:06:01,912 | INFO     | exitmsg: OK
[2026-01-25 20:06:59] 2026-01-25 19:06:01,912 | INFO     | cpuconsumptiontime: 54650 s
[2026-01-25 20:06:59] 2026-01-25 19:06:01,912 | INFO     | nevents: 400
[2026-01-25 20:06:59] 2026-01-25 19:06:01,912 | INFO     | neventsw: 0
[2026-01-25 20:06:59] 2026-01-25 19:06:01,912 | INFO     | pid: 6343
[2026-01-25 20:06:59] 2026-01-25 19:06:01,913 | INFO     | pgrp: 6343
[2026-01-25 20:06:59] 2026-01-25 19:06:01,913 | INFO     | corecount: 8
[2026-01-25 20:06:59] 2026-01-25 19:06:01,913 | INFO     | event service: False
[2026-01-25 20:06:59] 2026-01-25 19:06:01,913 | INFO     | sizes: {0: 2283714, 1: 2284171, 2: 2284259, 12: 2284259, 14598: 2314997, 14599: 2314996, 14604: 2324178, 14606: 2324234, 14608: 2324428}
[2026-01-25 20:06:59] 2026-01-25 19:06:01,913 | INFO     | --------------------------------------------------
[2026-01-25 20:06:59] 2026-01-25 19:06:01,913 | INFO     | 
[2026-01-25 20:06:59] 2026-01-25 19:06:01,913 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2026-01-25 20:06:59] 2026-01-25 19:06:02,115 | INFO     | time since job start (14621s) is within the limit (349056.0s)
[2026-01-25 20:06:59] 2026-01-25 19:06:02,492 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-25 20:06:59] 2026-01-25 19:06:02,493 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-25 20:06:59] 2026-01-25 19:06:02,493 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-25 20:06:59] 2026-01-25 19:06:02,493 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-25 20:06:59] 2026-01-25 19:06:02,493 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-25 20:06:59] 2026-01-25 19:06:02,493 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-25 20:06:59] 2026-01-25 19:06:02,493 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-25 20:06:59] 2026-01-25 19:06:02,493 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-25 20:06:59] 2026-01-25 19:06:02,493 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-25 20:06:59] 2026-01-25 19:06:02,493 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-25 20:06:59] 2026-01-25 19:06:02,494 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-25 20:06:59] 2026-01-25 19:06:02,494 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-25 20:06:59] 2026-01-25 19:06:02,494 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-25 20:06:59] 2026-01-25 19:06:02,494 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-25 20:06:59] 2026-01-25 19:06:02,494 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-25 20:06:59] 2026-01-25 19:06:02,494 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-25 20:06:59] 2026-01-25 19:06:02,494 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-25 20:06:59] 2026-01-25 19:06:02,494 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-25 20:06:59] 2026-01-25 19:06:02,494 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-25 20:06:59] 2026-01-25 19:06:02,494 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-25 20:06:59] 2026-01-25 19:06:02,495 | INFO     | job 6982020251 has completed (purged errors)
[2026-01-25 20:06:59] 2026-01-25 19:06:02,495 | INFO     | overall cleanup function is called
[2026-01-25 20:06:59] 2026-01-25 19:06:03,503 | INFO     | --- collectZombieJob: --- 10, [6343]
[2026-01-25 20:06:59] 2026-01-25 19:06:03,504 | INFO     | zombie collector waiting for pid 6343
[2026-01-25 20:06:59] 2026-01-25 19:06:03,504 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-25 20:06:59] 2026-01-25 19:06:03,504 | INFO     | collected zombie processes
[2026-01-25 20:06:59] 2026-01-25 19:06:03,504 | INFO     | will attempt to kill all subprocesses of pid=6343
[2026-01-25 20:06:59] 2026-01-25 19:06:03,588 | INFO     | process IDs to be killed: [6343] (in reverse order)
[2026-01-25 20:06:59] 2026-01-25 19:06:04,340 | WARNING  | found no corresponding commands to process id(s)
[2026-01-25 20:06:59] 2026-01-25 19:06:04,340 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-25 20:06:59] 2026-01-25 19:06:04,342 | INFO     | did not find any defunct processes belonging to 6343
[2026-01-25 20:06:59] 2026-01-25 19:06:04,344 | INFO     | did not find any defunct processes belonging to 6343
[2026-01-25 20:06:59] 2026-01-25 19:06:04,345 | INFO     | ready for new job
[2026-01-25 20:06:59] 2026-01-25 19:06:04,345 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-25 20:06:59] 2026-01-25 19:06:04,347 | INFO     | **************************************
[2026-01-25 20:06:59] 2026-01-25 19:06:04,347 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-25 20:06:59] 2026-01-25 19:06:04,347 | INFO     | **************************************
[2026-01-25 20:06:59] 2026-01-25 19:06:04,347 | INFO     | 
[2026-01-25 20:06:59] 2026-01-25 19:06:04,348 | INFO     | pilot is running in a VM
[2026-01-25 20:06:59] 2026-01-25 19:06:04,348 | INFO     | architecture information:
[2026-01-25 20:06:59] 2026-01-25 19:06:04,353 | INFO     | executing command: cat /etc/os-release
[2026-01-25 20:06:59] 2026-01-25 19:06:04,632 | INFO     | cat /etc/os-release:
[2026-01-25 20:06:59] NAME="CentOS Linux"
[2026-01-25 20:06:59] VERSION="7 (Core)"
[2026-01-25 20:06:59] ID="centos"
[2026-01-25 20:06:59] ID_LIKE="rhel fedora"
[2026-01-25 20:06:59] VERSION_ID="7"
[2026-01-25 20:06:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-25 20:06:59] ANSI_COLOR="0;31"
[2026-01-25 20:06:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-25 20:06:59] HOME_URL="https://www.centos.org/"
[2026-01-25 20:06:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-25 20:06:59] 
[2026-01-25 20:06:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-25 20:06:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-25 20:06:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-25 20:06:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-25 20:06:59] 
[2026-01-25 20:06:59] 2026-01-25 19:06:04,632 | INFO     | **************************************
[2026-01-25 20:06:59] 2026-01-25 19:06:05,136 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2026-01-25 20:06:59] 2026-01-25 19:06:05,396 | INFO     | sufficient remaining disk space (493823721472 B)
[2026-01-25 20:06:59] 2026-01-25 19:06:05,397 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-25 20:06:59] 2026-01-25 19:06:05,397 | INFO     | current server update state: UPDATING_FINAL
[2026-01-25 20:06:59] 2026-01-25 19:06:05,397 | INFO     | update_server=False
[2026-01-25 20:06:59] 2026-01-25 19:06:05,397 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-25 20:06:59] 2026-01-25 19:06:05,796 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-25 20:06:59] 2026-01-25 19:06:05,796 | INFO     | aborting loop
[2026-01-25 20:06:59] 2026-01-25 19:06:05,982 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-25 20:06:59] 2026-01-25 19:06:06,230 | INFO     | all data control threads have been joined
[2026-01-25 20:06:59] 2026-01-25 19:06:06,281 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-25 20:06:59] 2026-01-25 19:06:06,404 | INFO     | [job] retrieve thread has finished
[2026-01-25 20:06:59] 2026-01-25 19:06:06,469 | INFO     | [data] copytool_in thread has finished
[2026-01-25 20:06:59] 2026-01-25 19:06:06,497 | INFO     | all job control threads have been joined
[2026-01-25 20:06:59] 2026-01-25 19:06:06,636 | INFO     | [job] create_data_payload thread has finished
[2026-01-25 20:06:59] 2026-01-25 19:06:06,665 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-25 20:06:59] 2026-01-25 19:06:06,697 | INFO     | [payload] validate_post thread has finished
[2026-01-25 20:06:59] 2026-01-25 19:06:06,701 | INFO     | all payload control threads have been joined
[2026-01-25 20:06:59] 2026-01-25 19:06:06,782 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-25 20:06:59] 2026-01-25 19:06:06,802 | INFO     | [job] job monitor thread has finished
[2026-01-25 20:06:59] 2026-01-25 19:06:06,808 | INFO     | [payload] execute_payloads thread has finished
[2026-01-25 20:06:59] 2026-01-25 19:06:07,237 | INFO     | [data] control thread has finished
[2026-01-25 20:06:59] 2026-01-25 19:06:07,342 | INFO     | [payload] validate_pre thread has finished
[2026-01-25 20:06:59] 2026-01-25 19:06:07,504 | INFO     | [job] control thread has finished
[2026-01-25 20:06:59] 2026-01-25 19:06:07,505 | INFO     | [job] validate thread has finished
[2026-01-25 20:06:59] 2026-01-25 19:06:07,671 | INFO     | [job] queue monitor thread has finished
[2026-01-25 20:06:59] 2026-01-25 19:06:07,708 | INFO     | [payload] control thread has finished
[2026-01-25 20:06:59] 2026-01-25 19:06:07,914 | INFO     | [payload] failed_post thread has finished
[2026-01-25 20:06:59] 2026-01-25 19:06:08,289 | INFO     | [data] copytool_out thread has finished
[2026-01-25 20:06:59] 2026-01-25 19:06:09,990 | INFO     | [data] queue_monitor thread has finished
[2026-01-25 20:06:59] 2026-01-25 19:06:35,240 | INFO     | PID=1879 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-25 20:06:59] 2026-01-25 19:06:35,241 | INFO     | .. there are 2 such processes running
[2026-01-25 20:06:59] 2026-01-25 19:06:35,242 | INFO     | found 0 job(s) in 20 queues
[2026-01-25 20:06:59] 2026-01-25 19:06:35,242 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-25 20:06:59] 2026-01-25 19:06:35,242 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-25 20:06:59] 2026-01-25 19:06:46,328 | INFO     | [monitor] cgroup control has ended
[2026-01-25 20:06:59] 2026-01-25 19:06:48,091 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139659401672512)>', '<ExcThread(monitor, started 139658839189248)>']
[2026-01-25 20:06:59] 2026-01-25 19:06:48,320 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-25 20:06:59] 2026-01-25 19:06:48,321 | INFO     | [monitor] control thread has ended
[2026-01-25 20:06:59] 2026-01-25 19:06:53,116 | INFO     | all workflow threads have been joined
[2026-01-25 20:06:59] 2026-01-25 19:06:53,117 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-25 20:06:59] 2026-01-25 19:06:53,117 | INFO     | traces error code: 0
[2026-01-25 20:06:59] 2026-01-25 19:06:53,117 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-25 20:06:59] 2026-01-25 19:06:53,603 [wrapper] ==== pilot stdout END ====
[2026-01-25 20:06:59] 2026-01-25 19:06:53,764 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-25 20:06:59] 2026-01-25 19:06:53,899 [wrapper] pilotpid: 1879
[2026-01-25 20:06:59] 2026-01-25 19:06:54,003 [wrapper] Pilot exit status: 0
[2026-01-25 20:06:59] 2026-01-25 19:06:54,582 [wrapper] pandaids: 6982020251
[2026-01-25 20:06:59] 2026-01-25 19:06:55,704 [wrapper] cleanup supervisor_pilot 12428 1880
[2026-01-25 20:06:59] 2026-01-25 19:06:55,761 [wrapper] Test setup, not cleaning
[2026-01-25 20:06:59] 2026-01-25 19:06:55,846 [wrapper] apfmon messages muted
[2026-01-25 20:06:59] 2026-01-25 19:06:55,896 [wrapper] ==== wrapper stdout END ====
[2026-01-25 20:06:59] 2026-01-25 19:06:56,041 [wrapper] ==== wrapper stderr END ====
[2026-01-25 20:06:59]  *** Error codes and diagnostics ***
[2026-01-25 20:06:59]     "exeErrorCode": 0,
[2026-01-25 20:06:59]     "exeErrorDiag": "",
[2026-01-25 20:06:59]     "pilotErrorCode": 0,
[2026-01-25 20:06:59]     "pilotErrorDiag": "",
[2026-01-25 20:06:59]  *** Listing of results directory ***
[2026-01-25 20:06:59] total 726024
[2026-01-25 20:06:59] -rw-r--r--. 1 boinc boinc    584422 Jan 24 22:51 pilot3.tar.gz
[2026-01-25 20:06:59] -rw-r--r--. 1 boinc boinc      5111 Jan 24 22:52 queuedata.json
[2026-01-25 20:06:59] -rwx------. 1 boinc boinc     36322 Jan 24 22:53 runpilot2-wrapper.sh
[2026-01-25 20:06:59] -rw-r--r--. 1 boinc boinc       100 Jan 25 15:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-25 20:06:59] -rwxr-xr-x. 1 boinc boinc      7986 Jan 25 15:56 run_atlas
[2026-01-25 20:06:59] -rw-r--r--. 1 boinc boinc       105 Jan 25 15:56 job.xml
[2026-01-25 20:06:59] -rw-r--r--. 1 boinc boinc      6390 Jan 25 15:56 init_data.xml
[2026-01-25 20:06:59] -rw-r--r--. 2 boinc boinc 536170557 Jan 25 15:56 EVNT.48310836._000033.pool.root.1
[2026-01-25 20:06:59] -rw-r--r--. 2 boinc boinc     15845 Jan 25 15:56 start_atlas.sh
[2026-01-25 20:06:59] drwxrwx--x. 2 boinc boinc        68 Jan 25 15:56 shared
[2026-01-25 20:06:59] -rw-r--r--. 2 boinc boinc    597757 Jan 25 15:56 input.tar.gz
[2026-01-25 20:06:59] -rw-r--r--. 1 boinc boinc         0 Jan 25 15:56 boinc_lockfile
[2026-01-25 20:06:59] -rw-r--r--. 1 boinc boinc      2497 Jan 25 15:56 pandaJob.out
[2026-01-25 20:06:59] -rw-------. 1 boinc boinc       415 Jan 25 16:02 workernode_map.json
[2026-01-25 20:06:59] -rw-------. 1 boinc boinc   1004246 Jan 25 16:02 agis_schedconf.cvmfs.json
[2026-01-25 20:06:59] drwx------. 5 boinc boinc      4096 Jan 25 16:02 pilot3
[2026-01-25 20:06:59] -rw-------. 1 boinc boinc 198347135 Jan 25 20:04 HITS.48310840._001501.pool.root.1
[2026-01-25 20:06:59] -rw-r--r--. 1 boinc boinc       531 Jan 25 20:04 boinc_task_state.xml
[2026-01-25 20:06:59] -rw-------. 1 boinc boinc      1011 Jan 25 20:05 memory_monitor_summary.json
[2026-01-25 20:06:59] -rw-------. 1 boinc boinc   1516246 Jan 25 20:05 agis_ddmendpoints.agis.ALL.json
[2026-01-25 20:06:59] -rw-------. 1 boinc boinc    449932 Jan 25 20:05 log.48310840._001501.job.log.tgz.1
[2026-01-25 20:06:59] -rw-------. 1 boinc boinc      6313 Jan 25 20:06 heartbeat.json
[2026-01-25 20:06:59] -rw-r--r--. 1 boinc boinc        28 Jan 25 20:06 wrapper_checkpoint.txt
[2026-01-25 20:06:59] -rw-r--r--. 1 boinc boinc      8192 Jan 25 20:06 boinc_mmap_file
[2026-01-25 20:06:59] -rw-------. 1 boinc boinc        95 Jan 25 20:06 pilot_heartbeat.json
[2026-01-25 20:06:59] -rw-------. 1 boinc boinc      4879 Jan 25 20:06 pilotlog.txt
[2026-01-25 20:06:59] -rw-------. 1 boinc boinc   2052857 Jan 25 20:06 log.48310840._001501.job.log.1
[2026-01-25 20:06:59] -rw-------. 1 boinc boinc       357 Jan 25 20:06 output.list
[2026-01-25 20:06:59] -rw-r--r--. 1 boinc boinc       620 Jan 25 20:06 runtime_log
[2026-01-25 20:06:59] -rw-------. 1 boinc boinc   2519040 Jan 25 20:06 result.tar.gz
[2026-01-25 20:06:59] -rw-r--r--. 1 boinc boinc      8816 Jan 25 20:06 runtime_log.err
[2026-01-25 20:06:59] -rw-------. 1 boinc boinc       656 Jan 25 20:06 qeNODmBk038n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMPzKDm8r7SVm.diag
[2026-01-25 20:06:59] -rw-r--r--. 1 boinc boinc     20735 Jan 25 20:06 stderr.txt
[2026-01-25 20:06:59] HITS file was successfully produced:
[2026-01-25 20:06:59] -rw-------. 1 boinc boinc 198347135 Jan 25 20:04 shared/HITS.pool.root.1
[2026-01-25 20:06:59]  *** Contents of shared directory: ***
[2026-01-25 20:06:59] total 720368
[2026-01-25 20:06:59] -rw-r--r--. 2 boinc boinc 536170557 Jan 25 15:56 ATLAS.root_0
[2026-01-25 20:06:59] -rw-r--r--. 2 boinc boinc     15845 Jan 25 15:56 start_atlas.sh
[2026-01-25 20:06:59] -rw-r--r--. 2 boinc boinc    597757 Jan 25 15:56 input.tar.gz
[2026-01-25 20:06:59] -rw-------. 1 boinc boinc 198347135 Jan 25 20:04 HITS.pool.root.1
[2026-01-25 20:06:59] -rw-------. 1 boinc boinc   2519040 Jan 25 20:06 result.tar.gz
20:07:00 (30318): run_atlas exited; CPU time 54806.707311
20:07:00 (30318): called boinc_finish(0)

</stderr_txt>
]]>

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