Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:06:22 (1517190): wrapper (7.7.26015): starting
12:06:22 (1517190): wrapper: running run_atlas (--nthreads 2)
[2026-01-25 12:06:22] Arguments: --nthreads 2
[2026-01-25 12:06:22] Threads: 2
[2026-01-25 12:06:22] Checking for CVMFS
[2026-01-25 12:06:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-25 12:06:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-25 12:06:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-25 12:06:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-25 12:06:23] 2.9.2.0 770802 6641 67340 155505 2 50 20950117 36864001 0 130560 0 2219698 99.983 197802 5754 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-25 12:06:23] CVMFS is ok
[2026-01-25 12:06:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-25 12:06:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-25 12:06:23] Further information can be found at the LHC@home message board.
[2026-01-25 12:06:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-25 12:06:23] Checking for apptainer binary...
[2026-01-25 12:06:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-25 12:06:23] Running /usr/bin/apptainer --version
[2026-01-25 12:06:23] apptainer version 1.4.1-1.1
[2026-01-25 12:06:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-25 12:06:23] thA337
[2026-01-25 12:06:23] apptainer works
[2026-01-25 12:06:23] Set ATHENA_PROC_NUMBER=2
[2026-01-25 12:06:23] Set ATHENA_CORE_NUMBER=2
[2026-01-25 12:06:23] Starting ATLAS job with PandaID=6981240933
[2026-01-25 12:06:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-25 13:59:00]  *** The last 200 lines of the pilot log: ***
[2026-01-25 13:59:00] 2026-01-25 12:58:11,891 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-25 13:59:00] 2026-01-25 12:58:11,891 | INFO     | job 6981240933 has completed (purged errors)
[2026-01-25 13:59:00] 2026-01-25 12:58:11,891 | INFO     | overall cleanup function is called
[2026-01-25 13:59:00] 2026-01-25 12:58:12,484 | WARNING  | process 1525622 can no longer be monitored (due to stat problems) - aborting
[2026-01-25 13:59:00] 2026-01-25 12:58:12,506 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-25 13:59:00] 2026-01-25 12:58:12,506 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-25 13:59:00] 2026-01-25 12:58:12,506 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-25 13:59:00] 2026-01-25 12:58:12,506 | WARNING  | maxPSS not found in memory monitor output
[2026-01-25 13:59:00] 2026-01-25 12:58:12,506 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-6981240933/payload.stdout) since it has not been created yet
[2026-01-25 13:59:00] 2026-01-25 12:58:12,506 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-25 13:59:00] 2026-01-25 12:58:12,515 | INFO     | sufficient remaining disk space (488343863296 B)
[2026-01-25 13:59:00] 2026-01-25 12:58:12,515 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-01-25 13:59:00] 2026-01-25 12:58:12,515 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6981240933/HITS.48310826._005408.pool.root.1 since it does not exist
[2026-01-25 13:59:00] 2026-01-25 12:58:12,543 | INFO     | number of running child processes to parent process 1525622: 1
[2026-01-25 13:59:00] 2026-01-25 12:58:12,543 | INFO     | maximum number of monitored processes: 6
[2026-01-25 13:59:00] 2026-01-25 12:58:12,543 | INFO     | aborting job monitoring since job object (job id=6981240933) has expired
[2026-01-25 13:59:00] 2026-01-25 12:58:12,898 | INFO     | --- collectZombieJob: --- 10, [1525622]
[2026-01-25 13:59:00] 2026-01-25 12:58:12,898 | INFO     | zombie collector waiting for pid 1525622
[2026-01-25 13:59:00] 2026-01-25 12:58:12,898 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-25 13:59:00] 2026-01-25 12:58:12,898 | INFO     | collected zombie processes
[2026-01-25 13:59:00] 2026-01-25 12:58:12,899 | INFO     | will attempt to kill all subprocesses of pid=1525622
[2026-01-25 13:59:00] 2026-01-25 12:58:12,972 | INFO     | process IDs to be killed: [1525622] (in reverse order)
[2026-01-25 13:59:00] 2026-01-25 12:58:12,992 | WARNING  | found no corresponding commands to process id(s)
[2026-01-25 13:59:00] 2026-01-25 12:58:12,992 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-25 13:59:00] 2026-01-25 12:58:12,993 | INFO     | did not find any defunct processes belonging to 1525622
[2026-01-25 13:59:00] 2026-01-25 12:58:12,993 | INFO     | did not find any defunct processes belonging to 1525622
[2026-01-25 13:59:00] 2026-01-25 12:58:12,993 | INFO     | ready for new job
[2026-01-25 13:59:00] 2026-01-25 12:58:12,994 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-25 13:59:00] 2026-01-25 12:58:12,994 | INFO     | **************************************
[2026-01-25 13:59:00] 2026-01-25 12:58:12,994 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-25 13:59:00] 2026-01-25 12:58:12,994 | INFO     | **************************************
[2026-01-25 13:59:00] 2026-01-25 12:58:12,994 | INFO     | 
[2026-01-25 13:59:00] 2026-01-25 12:58:12,994 | INFO     | architecture information:
[2026-01-25 13:59:00] 2026-01-25 12:58:12,994 | INFO     | executing command: cat /etc/os-release
[2026-01-25 13:59:00] 2026-01-25 12:58:13,002 | INFO     | cat /etc/os-release:
[2026-01-25 13:59:00] NAME="CentOS Linux"
[2026-01-25 13:59:00] VERSION="7 (Core)"
[2026-01-25 13:59:00] ID="centos"
[2026-01-25 13:59:00] ID_LIKE="rhel fedora"
[2026-01-25 13:59:00] VERSION_ID="7"
[2026-01-25 13:59:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-25 13:59:00] ANSI_COLOR="0;31"
[2026-01-25 13:59:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-25 13:59:00] HOME_URL="https://www.centos.org/"
[2026-01-25 13:59:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-25 13:59:00] 
[2026-01-25 13:59:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-25 13:59:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-25 13:59:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-25 13:59:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-25 13:59:00] 
[2026-01-25 13:59:00] 2026-01-25 12:58:13,002 | INFO     | **************************************
[2026-01-25 13:59:00] 2026-01-25 12:58:13,506 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-25 13:59:00] 2026-01-25 12:58:13,517 | INFO     | sufficient remaining disk space (488344911872 B)
[2026-01-25 13:59:00] 2026-01-25 12:58:13,518 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-25 13:59:00] 2026-01-25 12:58:13,518 | INFO     | current server update state: UPDATING_FINAL
[2026-01-25 13:59:00] 2026-01-25 12:58:13,518 | INFO     | update_server=False
[2026-01-25 13:59:00] 2026-01-25 12:58:13,518 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-25 13:59:00] 2026-01-25 12:58:13,518 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-25 13:59:00] 2026-01-25 12:58:13,518 | INFO     | will abort loop
[2026-01-25 13:59:00] 2026-01-25 12:58:13,518 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-25 13:59:00] 2026-01-25 12:58:13,670 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-25 13:59:00] 2026-01-25 12:58:13,847 | INFO     | all payload control threads have been joined
[2026-01-25 13:59:00] 2026-01-25 12:58:14,524 | INFO     | [job] job monitor thread has finished
[2026-01-25 13:59:00] 2026-01-25 12:58:14,524 | INFO     | [job] retrieve thread has finished
[2026-01-25 13:59:00] 2026-01-25 12:58:14,525 | INFO     | [job] queue monitor thread has finished
[2026-01-25 13:59:00] 2026-01-25 12:58:14,564 | INFO     | all data control threads have been joined
[2026-01-25 13:59:00] 2026-01-25 12:58:14,853 | INFO     | [payload] control thread has finished
[2026-01-25 13:59:00] 2026-01-25 12:58:14,866 | INFO     | all job control threads have been joined
[2026-01-25 13:59:00] 2026-01-25 12:58:14,940 | INFO     | [job] validate thread has finished
[2026-01-25 13:59:00] 2026-01-25 12:58:15,129 | INFO     | [payload] failed_post thread has finished
[2026-01-25 13:59:00] 2026-01-25 12:58:15,141 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-25 13:59:00] 2026-01-25 12:58:15,302 | INFO     | [payload] execute_payloads thread has finished
[2026-01-25 13:59:00] 2026-01-25 12:58:15,334 | INFO     | [job] create_data_payload thread has finished
[2026-01-25 13:59:00] 2026-01-25 12:58:15,353 | INFO     | [data] copytool_in thread has finished
[2026-01-25 13:59:00] 2026-01-25 12:58:15,443 | INFO     | [payload] validate_pre thread has finished
[2026-01-25 13:59:00] 2026-01-25 12:58:15,570 | INFO     | [data] control thread has finished
[2026-01-25 13:59:00] 2026-01-25 12:58:15,676 | INFO     | [data] copytool_out thread has finished
[2026-01-25 13:59:00] 2026-01-25 12:58:15,830 | INFO     | [payload] validate_post thread has finished
[2026-01-25 13:59:00] 2026-01-25 12:58:15,871 | INFO     | [job] control thread has finished
[2026-01-25 13:59:00] 2026-01-25 12:58:19,148 | INFO     | [data] queue_monitor thread has finished
[2026-01-25 13:59:00] 2026-01-25 12:58:24,183 | INFO     | job.realtimelogging is not enabled
[2026-01-25 13:59:00] 2026-01-25 12:58:25,189 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-25 13:59:00] 2026-01-25 12:58:44,596 | INFO     | PID=1521215 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-25 13:59:00] 2026-01-25 12:58:44,596 | INFO     | found 0 job(s) in 20 queues
[2026-01-25 13:59:00] 2026-01-25 12:58:44,596 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-25 13:59:00] 2026-01-25 12:58:44,596 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-25 13:59:00] 2026-01-25 12:58:53,947 | INFO     | [monitor] cgroup control has ended
[2026-01-25 13:59:00] 2026-01-25 12:58:55,460 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140287336388416)>', '<ExcThread(monitor, started 140286676150016)>']
[2026-01-25 13:59:00] 2026-01-25 12:58:55,654 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-25 13:59:00] 2026-01-25 12:58:55,655 | INFO     | [monitor] control thread has ended
[2026-01-25 13:59:00] 2026-01-25 12:59:00,486 | INFO     | all workflow threads have been joined
[2026-01-25 13:59:00] 2026-01-25 12:59:00,486 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-25 13:59:00] 2026-01-25 12:59:00,486 | INFO     | traces error code: 0
[2026-01-25 13:59:00] 2026-01-25 12:59:00,487 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-25 13:59:00] 2026-01-25 12:59:00,528 [wrapper] ==== pilot stdout END ====
[2026-01-25 13:59:00] 2026-01-25 12:59:00,531 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-25 13:59:00] 2026-01-25 12:59:00,533 [wrapper] pilotpid: 1521215
[2026-01-25 13:59:00] 2026-01-25 12:59:00,535 [wrapper] Pilot exit status: 0
[2026-01-25 13:59:00] 2026-01-25 12:59:00,541 [wrapper] pandaids: 6981240933
[2026-01-25 13:59:00] 2026-01-25 12:59:00,553 [wrapper] cleanup supervisor_pilot 1530486 1521216
[2026-01-25 13:59:00] 2026-01-25 12:59:00,556 [wrapper] Test setup, not cleaning
[2026-01-25 13:59:00] 2026-01-25 12:59:00,558 [wrapper] apfmon messages muted
[2026-01-25 13:59:00] 2026-01-25 12:59:00,560 [wrapper] ==== wrapper stdout END ====
[2026-01-25 13:59:00] 2026-01-25 12:59:00,562 [wrapper] ==== wrapper stderr END ====
[2026-01-25 13:59:00]  *** Error codes and diagnostics ***
[2026-01-25 13:59:00]     "exeErrorCode": 0,
[2026-01-25 13:59:00]     "exeErrorDiag": "",
[2026-01-25 13:59:00]     "pilotErrorCode": 0,
[2026-01-25 13:59:00]     "pilotErrorDiag": "",
[2026-01-25 13:59:00]  *** Listing of results directory ***
[2026-01-25 13:59:00] total 666624
[2026-01-25 13:59:00] -rw-r--r-- 1 boinc boinc    584422 Jan 24 15:28 pilot3.tar.gz
[2026-01-25 13:59:00] -rwx------ 1 boinc boinc     36322 Jan 24 15:29 runpilot2-wrapper.sh
[2026-01-25 13:59:00] -rw-r--r-- 1 boinc boinc      5111 Jan 24 15:30 queuedata.json
[2026-01-25 13:59:00] -rw-r--r-- 1 boinc boinc       100 Jan 25 12:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-25 13:59:00] -rwxr-xr-x 1 boinc boinc      7986 Jan 25 12:06 run_atlas
[2026-01-25 13:59:00] -rw-r--r-- 1 boinc boinc       105 Jan 25 12:06 job.xml
[2026-01-25 13:59:00] -rw-r--r-- 2 boinc boinc 495604974 Jan 25 12:06 EVNT.48310824._000187.pool.root.1
[2026-01-25 13:59:00] -rw-r--r-- 2 boinc boinc    597756 Jan 25 12:06 input.tar.gz
[2026-01-25 13:59:00] -rw-r--r-- 2 boinc boinc     15845 Jan 25 12:06 start_atlas.sh
[2026-01-25 13:59:00] drwxrwx--x 2 boinc boinc      4096 Jan 25 12:06 shared
[2026-01-25 13:59:00] -rw-r--r-- 1 boinc boinc         0 Jan 25 12:06 boinc_setup_complete
[2026-01-25 13:59:00] -rw-r--r-- 1 boinc boinc      6206 Jan 25 12:06 init_data.xml
[2026-01-25 13:59:00] -rw-r--r-- 1 boinc boinc         0 Jan 25 12:06 boinc_lockfile
[2026-01-25 13:59:00] -rw-r--r-- 1 boinc boinc      2523 Jan 25 12:06 pandaJob.out
[2026-01-25 13:59:00] -rw------- 1 boinc boinc   1004254 Jan 25 12:06 agis_schedconf.cvmfs.json
[2026-01-25 13:59:00] -rw------- 1 boinc boinc   1516246 Jan 25 12:06 agis_ddmendpoints.agis.ALL.json
[2026-01-25 13:59:00] -rw------- 1 boinc boinc       419 Jan 25 12:06 workernode_map.json
[2026-01-25 13:59:00] drwx------ 5 boinc boinc      4096 Jan 25 12:06 pilot3
[2026-01-25 13:59:00] -rw------- 1 boinc boinc 180641333 Jan 25 13:57 HITS.48310826._005408.pool.root.1
[2026-01-25 13:59:00] -rw-r--r-- 1 boinc boinc       530 Jan 25 13:58 boinc_task_state.xml
[2026-01-25 13:59:00] -rw------- 1 boinc boinc      1020 Jan 25 13:58 memory_monitor_summary.json
[2026-01-25 13:59:00] -rw------- 1 boinc boinc    254569 Jan 25 13:58 log.48310826._005408.job.log.tgz.1
[2026-01-25 13:59:00] -rw------- 1 boinc boinc        95 Jan 25 13:58 pilot_heartbeat.json
[2026-01-25 13:59:00] -rw------- 1 boinc boinc      6288 Jan 25 13:58 heartbeat.json
[2026-01-25 13:59:00] -rw-r--r-- 1 boinc boinc      8192 Jan 25 13:58 boinc_mmap_file
[2026-01-25 13:59:00] -rw-r--r-- 1 boinc boinc        27 Jan 25 13:58 wrapper_checkpoint.txt
[2026-01-25 13:59:00] -rw------- 1 boinc boinc      4822 Jan 25 13:59 pilotlog.txt
[2026-01-25 13:59:00] -rw------- 1 boinc boinc    965504 Jan 25 13:59 log.48310826._005408.job.log.1
[2026-01-25 13:59:00] -rw------- 1 boinc boinc       357 Jan 25 13:59 output.list
[2026-01-25 13:59:00] -rw-r--r-- 1 boinc boinc       620 Jan 25 13:59 runtime_log
[2026-01-25 13:59:00] -rw------- 1 boinc boinc   1239040 Jan 25 13:59 result.tar.gz
[2026-01-25 13:59:00] -rw-r--r-- 1 boinc boinc      8896 Jan 25 13:59 runtime_log.err
[2026-01-25 13:59:00] -rw------- 1 boinc boinc       657 Jan 25 13:59 94tLDmDpt38n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyhyKDm92jWgn.diag
[2026-01-25 13:59:00] -rw-r--r-- 1 boinc boinc     12784 Jan 25 13:59 stderr.txt
[2026-01-25 13:59:00] HITS file was successfully produced:
[2026-01-25 13:59:00] -rw------- 1 boinc boinc 180641333 Jan 25 13:57 shared/HITS.pool.root.1
[2026-01-25 13:59:00]  *** Contents of shared directory: ***
[2026-01-25 13:59:00] total 662220
[2026-01-25 13:59:00] -rw-r--r-- 2 boinc boinc 495604974 Jan 25 12:06 ATLAS.root_0
[2026-01-25 13:59:00] -rw-r--r-- 2 boinc boinc    597756 Jan 25 12:06 input.tar.gz
[2026-01-25 13:59:00] -rw-r--r-- 2 boinc boinc     15845 Jan 25 12:06 start_atlas.sh
[2026-01-25 13:59:00] -rw------- 1 boinc boinc 180641333 Jan 25 13:57 HITS.pool.root.1
[2026-01-25 13:59:00] -rw------- 1 boinc boinc   1239040 Jan 25 13:59 result.tar.gz
13:59:02 (1517190): run_atlas exited; CPU time 12956.510393
13:59:02 (1517190): called boinc_finish(0)

</stderr_txt>
]]>

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