Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:19:06 (298821): wrapper (7.7.26015): starting
00:19:06 (298821): wrapper: running run_atlas (--nthreads 8)
[2026-01-25 00:19:06] Arguments: --nthreads 8
[2026-01-25 00:19:06] Threads: 8
[2026-01-25 00:19:06] Checking for CVMFS
[2026-01-25 00:19:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-25 00:19:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-25 00:19:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-25 00:19:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-25 00:19:12] 2.13.3.0 6596 94314 331132 155498 1 189 22424920 32935936 26871 16776704 0 441917023 99.691 336158130 32900 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-25 00:19:12] CVMFS is ok
[2026-01-25 00:19:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-25 00:19:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-25 00:19:12] Further information can be found at the LHC@home message board.
[2026-01-25 00:19:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-25 00:19:12] Checking for apptainer binary...
[2026-01-25 00:19:12] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-25 00:19:12] Running /usr/bin/apptainer --version
[2026-01-25 00:19:12] apptainer version 1.4.5-2.el9
[2026-01-25 00:19:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-25 00:19:15] c-6-7.aglt2.org
[2026-01-25 00:19:15] apptainer works
[2026-01-25 00:19:15] Set ATHENA_PROC_NUMBER=8
[2026-01-25 00:19:15] Set ATHENA_CORE_NUMBER=8
[2026-01-25 00:19:15] Starting ATLAS job with PandaID=6981424098
[2026-01-25 00:19:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:10 (298821): BOINC client no longer exists - exiting
00:20:10 (298821): timer handler: client dead, exiting
00:31:18 (379093): wrapper (7.7.26015): starting
00:31:18 (379093): wrapper: running run_atlas (--nthreads 8)
[2026-01-25 00:31:18] Arguments: --nthreads 8
[2026-01-25 00:31:18] Threads: 8
[2026-01-25 00:31:18] This job has been restarted, cleaning up previous attempt
[2026-01-25 00:31:18] Checking for CVMFS
[2026-01-25 00:31:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-25 00:31:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-25 00:31:20] Running cvmfs_config stat atlas.cern.ch
[2026-01-25 20:56:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-25 20:56:53] 2.13.3.0 6596 94326 339760 155498 1 385 22462306 32935937 21960 16776704 0 441991789 99.691 336158132 32900 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-25 20:56:53] CVMFS is ok
[2026-01-25 20:56:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-25 20:56:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-25 20:56:53] Further information can be found at the LHC@home message board.
[2026-01-25 20:56:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-25 20:56:53] Checking for apptainer binary...
[2026-01-25 20:56:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-25 20:56:53] Running /usr/bin/apptainer --version
[2026-01-25 20:56:54] apptainer version 1.4.5-2.el9
[2026-01-25 20:56:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-25 20:56:55] c-6-7.aglt2.org
[2026-01-25 20:56:55] apptainer works
[2026-01-25 20:56:55] Set ATHENA_PROC_NUMBER=8
[2026-01-25 20:56:55] Set ATHENA_CORE_NUMBER=8
[2026-01-25 20:56:55] Starting ATLAS job with PandaID=6981424098
[2026-01-25 20:56:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 15:01:40]  *** The last 200 lines of the pilot log: ***
[2026-01-26 15:01:40] 2026-01-26 08:27:19,581 | INFO     | extracted standard info from prmon json
[2026-01-26 15:01:40] 2026-01-26 08:27:19,581 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 15:01:40] 2026-01-26 08:27:19,581 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 15:01:40] 2026-01-26 08:27:19,589 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 15:01:40] 2026-01-26 08:27:19,589 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 15:01:40] 2026-01-26 08:27:19,612 | INFO     | fitting pss+swap vs Time
[2026-01-26 15:01:40] 2026-01-26 08:27:19,613 | INFO     | sum of square deviations: 17287232624.198902
[2026-01-26 15:01:40] 2026-01-26 08:27:19,621 | INFO     | sum of deviations: -30330765174.926716
[2026-01-26 15:01:40] 2026-01-26 08:27:19,621 | INFO     | mean x: 1769404343.382199
[2026-01-26 15:01:40] 2026-01-26 08:27:19,621 | INFO     | mean y: 2517748.7460732986
[2026-01-26 15:01:40] 2026-01-26 08:27:19,622 | INFO     | intersect: 3106969965.319855
[2026-01-26 15:01:40] 2026-01-26 08:27:19,622 | INFO     | chi2: 3.364780209593817
[2026-01-26 15:01:40] 2026-01-26 08:27:19,623 | INFO     | sum of square deviations: 16617335705.628681
[2026-01-26 15:01:40] 2026-01-26 08:27:19,627 | INFO     | sum of deviations: 20912928899.52781
[2026-01-26 15:01:40] 2026-01-26 08:27:19,627 | INFO     | mean x: 1769404190.8806367
[2026-01-26 15:01:40] 2026-01-26 08:27:19,627 | INFO     | mean y: 2529323.6339522544
[2026-01-26 15:01:40] 2026-01-26 08:27:19,627 | INFO     | intersect: -2224267119.184457
[2026-01-26 15:01:40] 2026-01-26 08:27:19,628 | INFO     | chi2: 1.8470637791137723
[2026-01-26 15:01:40] 2026-01-26 08:27:19,628 | INFO     | current chi2=1.8470637791137723 (change=45.1059604473618 %)
[2026-01-26 15:01:40] 2026-01-26 08:27:19,628 | INFO     | sum of square deviations: 15964974741.556456
[2026-01-26 15:01:40] 2026-01-26 08:27:19,632 | INFO     | sum of deviations: 21104990854.814564
[2026-01-26 15:01:40] 2026-01-26 08:27:19,632 | INFO     | mean x: 1769404038.3790324
[2026-01-26 15:01:40] 2026-01-26 08:27:19,632 | INFO     | mean y: 2529368.540322581
[2026-01-26 15:01:40] 2026-01-26 08:27:19,632 | INFO     | intersect: -2336544551.273519
[2026-01-26 15:01:40] 2026-01-26 08:27:19,633 | INFO     | chi2: 1.8474884817725536
[2026-01-26 15:01:40] 2026-01-26 08:27:19,633 | INFO     | current chi2=1.8474884817725536 (change=-0.022993394358322355 %)
[2026-01-26 15:01:40] 2026-01-26 08:27:19,633 | INFO     | right removable region: 371
[2026-01-26 15:01:40] 2026-01-26 08:27:19,634 | INFO     | sum of square deviations: 16617247507.755972
[2026-01-26 15:01:40] 2026-01-26 08:27:19,638 | INFO     | sum of deviations: -98907320934.74007
[2026-01-26 15:01:40] 2026-01-26 08:27:19,638 | INFO     | mean x: 1769404495.8938992
[2026-01-26 15:01:40] 2026-01-26 08:27:19,638 | INFO     | mean y: 2533278.156498674
[2026-01-26 15:01:40] 2026-01-26 08:27:19,638 | INFO     | intersect: 10534184699.793364
[2026-01-26 15:01:40] 2026-01-26 08:27:19,639 | INFO     | chi2: 1.6740787042853267
[2026-01-26 15:01:40] 2026-01-26 08:27:19,639 | INFO     | current chi2=1.6740787042853267 (change=50.24701169151804 %)
[2026-01-26 15:01:40] 2026-01-26 08:27:19,639 | INFO     | sum of square deviations: 15964820357.516182
[2026-01-26 15:01:40] 2026-01-26 08:27:19,643 | INFO     | sum of deviations: -94186589847.03223
[2026-01-26 15:01:40] 2026-01-26 08:27:19,643 | INFO     | mean x: 1769404648.403226
[2026-01-26 15:01:40] 2026-01-26 08:27:19,643 | INFO     | mean y: 2532161.193548387
[2026-01-26 15:01:40] 2026-01-26 08:27:19,644 | INFO     | intersect: 10441371193.549255
[2026-01-26 15:01:40] 2026-01-26 08:27:19,644 | INFO     | chi2: 1.6572238924443314
[2026-01-26 15:01:40] 2026-01-26 08:27:19,644 | INFO     | current chi2=1.6572238924443314 (change=1.006811196979574 %)
[2026-01-26 15:01:40] 2026-01-26 08:27:19,644 | INFO     | left removable region: 20
[2026-01-26 15:01:40] 2026-01-26 08:27:19,645 | INFO     | sum of square deviations: 13411040634.92311
[2026-01-26 15:01:40] 2026-01-26 08:27:19,648 | INFO     | sum of deviations: -20274462126.923084
[2026-01-26 15:01:40] 2026-01-26 08:27:19,648 | INFO     | mean x: 1769404617.9230769
[2026-01-26 15:01:40] 2026-01-26 08:27:19,648 | INFO     | mean y: 2538981.002849003
[2026-01-26 15:01:40] 2026-01-26 08:27:19,648 | INFO     | intersect: 2677478822.7230372
[2026-01-26 15:01:40] 2026-01-26 08:27:19,649 | INFO     | chi2: 0.00881505100540283
[2026-01-26 15:01:40] 2026-01-26 08:27:19,649 | INFO     | current memory leak: -1.51 B/s (using 351 data points, chi2=0.01)
[2026-01-26 15:01:40] 2026-01-26 08:27:19,650 | INFO     | could have reported an average CPU frequency of 2600 MHz (16 samples)
[2026-01-26 15:01:40] 2026-01-26 08:27:19,650 | INFO     | ..............................
[2026-01-26 15:01:40] 2026-01-26 08:27:19,650 | INFO     | . Timing measurements:
[2026-01-26 15:01:40] 2026-01-26 08:27:19,650 | INFO     | . get job = 0 s
[2026-01-26 15:01:40] 2026-01-26 08:27:19,650 | INFO     | . initial setup = 23 s
[2026-01-26 15:01:40] 2026-01-26 08:27:19,650 | INFO     | . payload setup = 29 s
[2026-01-26 15:01:40] 2026-01-26 08:27:19,650 | INFO     | . stage-in = 0 s
[2026-01-26 15:01:40] 2026-01-26 08:27:19,651 | INFO     | . payload execution = 23287 s
[2026-01-26 15:01:40] 2026-01-26 08:27:19,651 | INFO     | . stage-out = 22 s
[2026-01-26 15:01:40] 2026-01-26 08:27:19,651 | INFO     | . log creation = 4 s
[2026-01-26 15:01:40] 2026-01-26 08:27:19,651 | INFO     | ..............................
[2026-01-26 15:01:40] 2026-01-26 08:27:19,777 | INFO     | 
[2026-01-26 15:01:40] 2026-01-26 08:27:19,777 | INFO     | job summary report
[2026-01-26 15:01:40] 2026-01-26 08:27:19,777 | INFO     | --------------------------------------------------
[2026-01-26 15:01:40] 2026-01-26 08:27:19,777 | INFO     | PanDA job id: 6981424098
[2026-01-26 15:01:40] 2026-01-26 08:27:19,777 | INFO     | task id: 48310783
[2026-01-26 15:01:40] 2026-01-26 08:27:19,777 | INFO     | errors: (none)
[2026-01-26 15:01:40] 2026-01-26 08:27:19,777 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 15:01:40] 2026-01-26 08:27:19,777 | INFO     | pilot state: finished 
[2026-01-26 15:01:40] 2026-01-26 08:27:19,777 | INFO     | transexitcode: 0
[2026-01-26 15:01:40] 2026-01-26 08:27:19,778 | INFO     | exeerrorcode: 0
[2026-01-26 15:01:40] 2026-01-26 08:27:19,778 | INFO     | exeerrordiag: 
[2026-01-26 15:01:40] 2026-01-26 08:27:19,778 | INFO     | exitcode: 0
[2026-01-26 15:01:40] 2026-01-26 08:27:19,778 | INFO     | exitmsg: OK
[2026-01-26 15:01:40] 2026-01-26 08:27:19,778 | INFO     | cpuconsumptiontime: 49824 s
[2026-01-26 15:01:40] 2026-01-26 08:27:19,778 | INFO     | nevents: 400
[2026-01-26 15:01:40] 2026-01-26 08:27:19,778 | INFO     | neventsw: 0
[2026-01-26 15:01:40] 2026-01-26 08:27:19,778 | INFO     | pid: 1504451
[2026-01-26 15:01:40] 2026-01-26 08:27:19,778 | INFO     | pgrp: 1504451
[2026-01-26 15:01:40] 2026-01-26 08:27:19,778 | INFO     | corecount: 8
[2026-01-26 15:01:40] 2026-01-26 08:27:19,778 | INFO     | event service: False
[2026-01-26 15:01:40] 2026-01-26 08:27:19,779 | INFO     | sizes: {0: 2283694, 1: 2284211, 2: 2284211, 23327: 2317865, 23331: 2317864, 23358: 2326918, 23361: 2327102, 23362: 2327296}
[2026-01-26 15:01:40] 2026-01-26 08:27:19,779 | INFO     | --------------------------------------------------
[2026-01-26 15:01:40] 2026-01-26 08:27:19,779 | INFO     | 
[2026-01-26 15:01:40] 2026-01-26 08:27:19,779 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-26 15:01:40] 2026-01-26 08:27:19,993 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 15:01:40] 2026-01-26 08:27:19,993 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 15:01:40] 2026-01-26 08:27:19,994 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 15:01:40] 2026-01-26 08:27:19,994 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 15:01:40] 2026-01-26 08:27:19,994 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 15:01:40] 2026-01-26 08:27:19,994 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 15:01:40] 2026-01-26 08:27:19,994 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 15:01:40] 2026-01-26 08:27:19,994 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 15:01:40] 2026-01-26 08:27:19,994 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 15:01:40] 2026-01-26 08:27:19,994 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 15:01:40] 2026-01-26 08:27:19,994 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 15:01:40] 2026-01-26 08:27:19,994 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 15:01:40] 2026-01-26 08:27:19,995 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 15:01:40] 2026-01-26 08:27:19,995 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 15:01:40] 2026-01-26 08:27:19,995 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 15:01:40] 2026-01-26 08:27:19,995 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 15:01:40] 2026-01-26 08:27:19,995 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 15:01:40] 2026-01-26 08:27:19,995 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 15:01:40] 2026-01-26 08:27:19,995 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 15:01:40] 2026-01-26 08:27:19,995 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 15:01:40] 2026-01-26 08:27:19,995 | INFO     | job 6981424098 has completed (purged errors)
[2026-01-26 15:01:40] 2026-01-26 08:27:19,996 | INFO     | overall cleanup function is called
[2026-01-26 15:01:40] 2026-01-26 08:27:21,086 | INFO     | --- collectZombieJob: --- 10, [1504451]
[2026-01-26 15:01:40] 2026-01-26 08:27:21,086 | INFO     | zombie collector waiting for pid 1504451
[2026-01-26 15:01:40] 2026-01-26 08:27:21,086 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 15:01:40] 2026-01-26 08:27:21,086 | INFO     | collected zombie processes
[2026-01-26 15:01:40] 2026-01-26 08:27:21,086 | INFO     | will attempt to kill all subprocesses of pid=1504451
[2026-01-26 15:01:40] 2026-01-26 08:27:27,290 | INFO     | PID=1495696 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 15:01:40] 2026-01-26 08:27:27,291 | INFO     | .. there are 32 such processes running
[2026-01-26 15:01:40] 2026-01-26 08:27:30,326 | INFO     | process IDs to be killed: [1504451] (in reverse order)
[2026-01-26 15:01:40] 2026-01-26 08:27:31,988 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 15:01:40] 2026-01-26 08:27:31,988 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 15:01:40] 2026-01-26 08:27:32,094 | INFO     | did not find any defunct processes belonging to 1504451
[2026-01-26 15:01:40] 2026-01-26 08:27:32,197 | INFO     | did not find any defunct processes belonging to 1504451
[2026-01-26 15:01:40] 2026-01-26 08:27:32,197 | INFO     | ready for new job
[2026-01-26 15:01:40] 2026-01-26 08:27:32,222 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 15:01:40] 2026-01-26 08:27:32,224 | INFO     | **************************************
[2026-01-26 15:01:40] 2026-01-26 08:27:32,224 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 15:01:40] 2026-01-26 08:27:32,224 | INFO     | **************************************
[2026-01-26 15:01:40] 2026-01-26 08:27:32,224 | INFO     | 
[2026-01-26 15:01:40] 2026-01-26 08:27:32,251 | INFO     | architecture information:
[2026-01-26 15:01:40] 2026-01-26 08:27:32,261 | INFO     | executing command: cat /etc/os-release
[2026-01-26 15:01:40] 2026-01-26 08:27:32,462 | INFO     | cat /etc/os-release:
[2026-01-26 15:01:40] NAME="CentOS Linux"
[2026-01-26 15:01:40] VERSION="7 (Core)"
[2026-01-26 15:01:40] ID="centos"
[2026-01-26 15:01:40] ID_LIKE="rhel fedora"
[2026-01-26 15:01:40] VERSION_ID="7"
[2026-01-26 15:01:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 15:01:40] ANSI_COLOR="0;31"
[2026-01-26 15:01:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 15:01:40] HOME_URL="https://www.centos.org/"
[2026-01-26 15:01:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 15:01:40] 
[2026-01-26 15:01:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 15:01:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 15:01:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 15:01:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 15:01:40] 
[2026-01-26 15:01:40] 2026-01-26 08:27:32,463 | INFO     | **************************************
[2026-01-26 15:01:40] 2026-01-26 08:27:32,967 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-26 15:01:40] 2026-01-26 08:27:33,118 | INFO     | sufficient remaining disk space (71996276736 B)
[2026-01-26 15:01:40] 2026-01-26 08:27:33,118 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 15:01:40] 2026-01-26 08:27:33,119 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 15:01:40] 2026-01-26 08:27:33,119 | INFO     | update_server=False
[2026-01-26 15:01:40] 2026-01-26 08:27:33,119 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 15:01:40] 2026-01-26 08:27:33,130 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 15:01:40] 2026-01-26 08:27:33,130 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 15:01:40] 2026-01-26 08:27:33,525 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-26 15:01:40] 2026-01-26 08:27:33,525 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-26 15:01:40] 2026-01-26 08:27:33,525 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 15:01:40] 2026-01-26 08:27:33,525 | INFO     | will abort loop
[2026-01-26 15:01:40] 2026-01-26 08:27:34,125 | INFO     | [job] retrieve thread has finished
[2026-01-26 15:01:40] 2026-01-26 08:27:34,135 | INFO     | [job] queue monitor thread has finished
[2026-01-26 15:01:40] 2026-01-26 08:27:34,225 | INFO     | all data control threads have been joined
[2026-01-26 15:01:40] 2026-01-26 08:27:34,401 | INFO     | all job control threads have been joined
[2026-01-26 15:01:40] 2026-01-26 08:27:34,558 | INFO     | [job] job monitor thread has finished
[2026-01-26 15:01:40] 2026-01-26 08:27:34,614 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 15:01:40] 2026-01-26 08:27:34,635 | INFO     | all payload control threads have been joined
[2026-01-26 15:01:40] 2026-01-26 08:27:34,829 | INFO     | [data] copytool_in thread has finished
[2026-01-26 15:01:40] 2026-01-26 08:27:34,993 [wrapper] supervise_pilot (15 min periods counter: 27)
[2026-01-26 15:01:40] 2026-01-26 08:27:35,069 | INFO     | [payload] failed_post thread has finished
[2026-01-26 15:01:40] 2026-01-26 08:27:35,069 | INFO     | [payload] validate_post thread has finished
[2026-01-26 15:01:40] 2026-01-26 08:27:35,141 | INFO     | [data] copytool_out thread has finished
[2026-01-26 15:01:40] 2026-01-26 08:27:35,233 | INFO     | [data] control thread has finished
[2026-01-26 15:01:40] 2026-01-26 08:27:35,329 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 15:01:40] 2026-01-26 08:27:35,385 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 15:01:40] 2026-01-26 08:27:35,407 | INFO     | [job] control thread has finished
[2026-01-26 15:01:40] 2026-01-26 08:27:35,580 | INFO     | [job] validate thread has finished
[2026-01-26 15:01:40] 2026-01-26 08:27:35,652 | INFO     | [payload] control thread has finished
[2026-01-26 15:01:40] 2026-01-26 08:27:35,704 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 15:01:40] 2026-01-26 08:27:35,832 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 15:01:40] 2026-01-26 08:27:39,925 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 15:01:40] 2026-01-26 08:27:45,115 | INFO     | [monitor] cgroup control has ended
[2026-01-26 15:01:40] 2026-01-26 08:27:46,174 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140579290318656)>', '<ExcThread(monitor, started 140578406774528)>']
[2026-01-26 15:01:40] 2026-01-26 08:27:51,224 | INFO     | all workflow threads have been joined
[2026-01-26 15:01:40] 2026-01-26 08:27:51,224 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 15:01:40] 2026-01-26 08:27:51,224 | INFO     | traces error code: 0
[2026-01-26 15:01:40] 2026-01-26 08:27:51,224 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 15:01:40] 2026-01-26 08:28:16,805 | INFO     | PID=1495696 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 15:01:40] 2026-01-26 08:28:16,805 | INFO     | .. there are 32 such processes running
[2026-01-26 15:01:40] 2026-01-26 08:28:16,977 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 15:01:40] 2026-01-26 08:28:16,977 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 15:01:40] 2026-01-26 08:28:16,977 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 15:01:40] 2026-01-26 08:28:16,977 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 15:01:40] 2026-01-26 08:28:16,977 | INFO     | [monitor] control thread has ended
[2026-01-26 15:01:40] 2026-01-26 08:28:20,047 [wrapper] ==== pilot stdout END ====
[2026-01-26 15:01:40] 2026-01-26 08:28:20,089 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 15:01:40] 2026-01-26 08:28:20,231 [wrapper] pilotpid: 1495696
[2026-01-26 15:01:40] 2026-01-26 08:28:20,302 [wrapper] Pilot exit status: 0
[2026-01-26 15:01:40] 2026-01-26 08:28:20,501 [wrapper] pandaids: 6981424098
[2026-01-26 15:01:40] 2026-01-26 08:28:20,767 [wrapper] cleanup supervisor_pilot 2920055 1495697
[2026-01-26 15:01:40] 2026-01-26 08:28:20,826 [wrapper] Test setup, not cleaning
[2026-01-26 15:01:40] 2026-01-26 08:28:20,871 [wrapper] apfmon messages muted
[2026-01-26 15:01:40] 2026-01-26 08:28:20,921 [wrapper] ==== wrapper stdout END ====
[2026-01-26 15:01:40] 2026-01-26 08:28:20,971 [wrapper] ==== wrapper stderr END ====
[2026-01-26 15:01:40]  *** Error codes and diagnostics ***
[2026-01-26 15:01:40]     "exeErrorCode": 0,
[2026-01-26 15:01:40]     "exeErrorDiag": "",
[2026-01-26 15:01:40]     "pilotErrorCode": 0,
[2026-01-26 15:01:40]     "pilotErrorDiag": "",
[2026-01-26 15:01:40]  *** Listing of results directory ***
[2026-01-26 15:01:40] total 1252548
[2026-01-26 15:01:40] -rwx------. 1 boincer umatlas     36322 Jan 24 14:32 runpilot2-wrapper.sh
[2026-01-26 15:01:40] -rw-r--r--. 1 boincer umatlas      5111 Jan 24 14:34 queuedata.json
[2026-01-26 15:01:40] -rw-r--r--. 1 boincer umatlas    584422 Jan 24 14:36 pilot3.tar.gz
[2026-01-26 15:01:40] -rw-r--r--. 1 boincer umatlas       100 Jan 25 00:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 15:01:40] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 25 00:19 run_atlas
[2026-01-26 15:01:40] -rw-r--r--. 1 boincer umatlas       105 Jan 25 00:19 job.xml
[2026-01-26 15:01:40] -rw-r--r--. 3 boincer umatlas 537333380 Jan 25 00:19 EVNT.48310779._000025.pool.root.1
[2026-01-26 15:01:40] -rw-r--r--. 3 boincer umatlas 537333380 Jan 25 00:19 ATLAS.root_0
[2026-01-26 15:01:40] -rw-r--r--. 2 boincer umatlas    597759 Jan 25 00:19 input.tar.gz
[2026-01-26 15:01:40] -rw-r--r--. 2 boincer umatlas     15845 Jan 25 00:19 start_atlas.sh
[2026-01-26 15:01:40] drwxrwx--x. 2 boincer umatlas      4096 Jan 25 00:19 shared
[2026-01-26 15:01:40] -rw-r--r--. 1 boincer umatlas         0 Jan 25 00:19 boinc_lockfile
[2026-01-26 15:01:40] -rw-r--r--. 1 boincer umatlas      2523 Jan 25 20:56 pandaJob.out
[2026-01-26 15:01:40] -rw-------. 1 boincer umatlas        57 Jan 25 20:56 setup.sh.local
[2026-01-26 15:01:40] -rw-------. 1 boincer umatlas   1004246 Jan 25 20:57 agis_schedconf.cvmfs.json
[2026-01-26 15:01:40] -rw-------. 1 boincer umatlas       430 Jan 25 20:57 workernode_map.json
[2026-01-26 15:01:40] drwx------. 5 boincer umatlas      4096 Jan 25 20:57 pilot3
[2026-01-26 15:01:40] -rw-------. 1 boincer umatlas 198262527 Jan 26 03:24 HITS.48310783._002231.pool.root.1
[2026-01-26 15:01:40] -rw-r--r--. 1 boincer umatlas       532 Jan 26 03:24 boinc_task_state.xml
[2026-01-26 15:01:40] -rw-------. 1 boincer umatlas      1055 Jan 26 03:26 memory_monitor_summary.json
[2026-01-26 15:01:40] -rw-------. 1 boincer umatlas   1516246 Jan 26 03:26 agis_ddmendpoints.agis.ALL.json
[2026-01-26 15:01:40] -rw-------. 1 boincer umatlas    544169 Jan 26 03:27 log.48310783._002231.job.log.tgz.1
[2026-01-26 15:01:40] -rw-------. 1 boincer umatlas      6404 Jan 26 03:27 heartbeat.json
[2026-01-26 15:01:40] -rw-------. 1 boincer umatlas        95 Jan 26 03:27 pilot_heartbeat.json
[2026-01-26 15:01:40] -rw-------. 1 boincer umatlas       823 Jan 26 03:28 pilotlog.txt
[2026-01-26 15:01:40] -rw-------. 1 boincer umatlas   2325233 Jan 26 03:28 log.48310783._002231.job.log.1
[2026-01-26 15:01:40] -rw-------. 1 boincer umatlas       357 Jan 26 03:28 output.list
[2026-01-26 15:01:40] -rw-r--r--. 1 boincer umatlas       620 Jan 26 03:28 runtime_log
[2026-01-26 15:01:40] -rw-------. 1 boincer umatlas   2887680 Jan 26 03:28 result.tar.gz
[2026-01-26 15:01:40] -rw-r--r--. 1 boincer umatlas      9412 Jan 26 03:28 runtime_log.err
[2026-01-26 15:01:40] -rw-------. 1 boincer umatlas       784 Jan 26 03:28 NFCLDmbYy38nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcr5KDmHP2Tjn.diag
[2026-01-26 15:01:40] -rw-r--r--. 1 boincer umatlas      6657 Jan 26 15:01 init_data.xml
[2026-01-26 15:01:40] -rw-r--r--. 1 boincer umatlas      8192 Jan 26 15:01 boinc_mmap_file
[2026-01-26 15:01:40] -rw-r--r--. 1 boincer umatlas        28 Jan 26 15:01 wrapper_checkpoint.txt
[2026-01-26 15:01:40] -rw-r--r--. 1 boincer umatlas     23466 Jan 26 15:01 stderr.txt
[2026-01-26 15:01:40] HITS file was successfully produced:
[2026-01-26 15:01:40] -rw-------. 1 boincer umatlas 198262527 Jan 26 03:24 shared/HITS.pool.root.1
[2026-01-26 15:01:40]  *** Contents of shared directory: ***
[2026-01-26 15:01:40] total 721784
[2026-01-26 15:01:40] -rw-r--r--. 3 boincer umatlas 537333380 Jan 25 00:19 ATLAS.root_0
[2026-01-26 15:01:40] -rw-r--r--. 2 boincer umatlas    597759 Jan 25 00:19 input.tar.gz
[2026-01-26 15:01:40] -rw-r--r--. 2 boincer umatlas     15845 Jan 25 00:19 start_atlas.sh
[2026-01-26 15:01:40] -rw-------. 1 boincer umatlas 198262527 Jan 26 03:24 HITS.pool.root.1
[2026-01-26 15:01:40] -rw-------. 1 boincer umatlas   2887680 Jan 26 03:28 result.tar.gz
15:01:42 (379093): run_atlas exited; CPU time 50468.408870
15:01:42 (379093): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN