Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:06:28 (3461906): wrapper (7.7.26015): starting
00:06:28 (3461906): wrapper: running run_atlas (--nthreads 8)
[2026-01-25 00:06:28] Arguments: --nthreads 8
[2026-01-25 00:06:28] Threads: 8
[2026-01-25 00:06:28] Checking for CVMFS
[2026-01-25 00:06:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-25 00:06:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-25 00:06:30] Running cvmfs_config stat atlas.cern.ch
[2026-01-25 00:06:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-25 00:06:33] 2.13.3.0 14259 114570 238384 155496 1 410 29952971 32935936 27177 16776704 0 540947996 99.702 394914023 32398 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-25 00:06:33] CVMFS is ok
[2026-01-25 00:06:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-25 00:06:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-25 00:06:33] Further information can be found at the LHC@home message board.
[2026-01-25 00:06:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-25 00:06:33] Checking for apptainer binary...
[2026-01-25 00:06:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-25 00:06:33] Running /usr/bin/apptainer --version
[2026-01-25 00:06:34] apptainer version 1.4.5-2.el9
[2026-01-25 00:06:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-25 00:06:37] c-4-36.aglt2.org
[2026-01-25 00:06:37] apptainer works
[2026-01-25 00:06:37] Set ATHENA_PROC_NUMBER=8
[2026-01-25 00:06:37] Set ATHENA_CORE_NUMBER=8
[2026-01-25 00:06:38] Starting ATLAS job with PandaID=6982024072
[2026-01-25 00:06:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-25 22:05:25]  *** The last 200 lines of the pilot log: ***
[2026-01-25 22:05:25] 2026-01-26 03:04:39,625 | INFO     | sum of deviations: 2712532833309.805
[2026-01-25 22:05:25] 2026-01-26 03:04:39,625 | INFO     | mean x: 1769357160.2247279
[2026-01-25 22:05:25] 2026-01-26 03:04:39,626 | INFO     | mean y: 2472686.50933126
[2026-01-25 22:05:25] 2026-01-26 03:04:39,626 | INFO     | intersect: -7276028550.10617
[2026-01-25 22:05:25] 2026-01-26 03:04:39,632 | INFO     | chi2: 12.248906462356347
[2026-01-25 22:05:25] 2026-01-26 03:04:39,632 | INFO     | current chi2=12.248906462356347 (change=15.0531950913357 %)
[2026-01-25 22:05:25] 2026-01-26 03:04:39,632 | INFO     | right removable region: 1285
[2026-01-25 22:05:25] 2026-01-26 03:04:39,634 | INFO     | sum of square deviations: 659398131509.5021
[2026-01-25 22:05:25] 2026-01-26 03:04:40,109 | INFO     | sum of deviations: 2039908850737.4978
[2026-01-25 22:05:25] 2026-01-26 03:04:40,110 | INFO     | mean x: 1769357465.2239501
[2026-01-25 22:05:25] 2026-01-26 03:04:40,110 | INFO     | mean y: 2476398.9253499224
[2026-01-25 22:05:25] 2026-01-26 03:04:40,110 | INFO     | intersect: -5471193878.493065
[2026-01-25 22:05:25] 2026-01-26 03:04:40,129 | INFO     | chi2: 10.332812608510803
[2026-01-25 22:05:25] 2026-01-26 03:04:40,129 | INFO     | current chi2=10.332812608510803 (change=28.341405862601277 %)
[2026-01-25 22:05:25] 2026-01-26 03:04:40,131 | INFO     | sum of square deviations: 651735420785.9176
[2026-01-25 22:05:25] 2026-01-26 03:04:40,341 | INFO     | monitor loop #3213: job 0:6982024072 is in state 'finished'
[2026-01-25 22:05:25] 2026-01-26 03:04:40,342 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-25 22:05:25] 2026-01-26 03:04:40,492 | INFO     | sum of deviations: 1681133734500.82
[2026-01-25 22:05:25] 2026-01-26 03:04:40,492 | INFO     | mean x: 1769357617.7275567
[2026-01-25 22:05:25] 2026-01-26 03:04:40,492 | INFO     | mean y: 2483538.7416081186
[2026-01-25 22:05:25] 2026-01-26 03:04:40,493 | INFO     | intersect: -4561526157.050077
[2026-01-25 22:05:25] 2026-01-26 03:04:40,494 | INFO     | chi2: 7.5844075366030825
[2026-01-25 22:05:25] 2026-01-26 03:04:40,495 | INFO     | current chi2=7.5844075366030825 (change=26.598808824268705 %)
[2026-01-25 22:05:25] 2026-01-26 03:04:40,496 | INFO     | sum of square deviations: 644132370346.2601
[2026-01-25 22:05:25] 2026-01-26 03:04:40,580 | INFO     | sum of deviations: 1357819822749.0261
[2026-01-25 22:05:25] 2026-01-26 03:04:40,588 | INFO     | mean x: 1769357770.2304075
[2026-01-25 22:05:25] 2026-01-26 03:04:40,588 | INFO     | mean y: 2490023.2210031347
[2026-01-25 22:05:25] 2026-01-26 03:04:40,588 | INFO     | intersect: -3727285353.0147724
[2026-01-25 22:05:25] 2026-01-26 03:04:40,590 | INFO     | chi2: 5.390108595312483
[2026-01-25 22:05:25] 2026-01-26 03:04:40,590 | INFO     | current chi2=5.390108595312483 (change=28.931711945866578 %)
[2026-01-25 22:05:25] 2026-01-26 03:04:40,614 | INFO     | sum of square deviations: 636588670592.5829
[2026-01-25 22:05:25] 2026-01-26 03:04:40,918 | INFO     | sum of deviations: 1096893715421.6378
[2026-01-25 22:05:25] 2026-01-26 03:04:40,919 | INFO     | mean x: 1769357922.733281
[2026-01-25 22:05:25] 2026-01-26 03:04:40,919 | INFO     | mean y: 2495297.5712037766
[2026-01-25 22:05:25] 2026-01-26 03:04:40,919 | INFO     | intersect: -3046251366.37898
[2026-01-25 22:05:25] 2026-01-26 03:04:40,921 | INFO     | chi2: 3.9944548369726096
[2026-01-25 22:05:25] 2026-01-26 03:04:40,921 | INFO     | current chi2=3.9944548369726096 (change=25.89286901480253 %)
[2026-01-25 22:05:25] 2026-01-26 03:04:41,163 | INFO     | sum of square deviations: 629104397004.2594
[2026-01-25 22:05:25] 2026-01-26 03:04:41,989 | INFO     | sum of deviations: 926017504189.1626
[2026-01-25 22:05:25] 2026-01-26 03:04:41,990 | INFO     | mean x: 1769358075.2330174
[2026-01-25 22:05:25] 2026-01-26 03:04:41,990 | INFO     | mean y: 2498778.240126382
[2026-01-25 22:05:25] 2026-01-26 03:04:41,990 | INFO     | intersect: -2601928335.3620152
[2026-01-25 22:05:25] 2026-01-26 03:04:42,000 | INFO     | chi2: 3.4096580273455483
[2026-01-25 22:05:25] 2026-01-26 03:04:42,000 | INFO     | current chi2=3.4096580273455483 (change=14.64021583656902 %)
[2026-01-25 22:05:25] 2026-01-26 03:04:42,000 | INFO     | left removable region: 50
[2026-01-25 22:05:25] 2026-01-26 03:04:42,002 | INFO     | sum of square deviations: 584008957087.6715
[2026-01-25 22:05:25] 2026-01-26 03:04:42,313 | INFO     | sum of deviations: 693270393058.6333
[2026-01-25 22:05:25] 2026-01-26 03:04:42,330 | INFO     | mean x: 1769358654.7295547
[2026-01-25 22:05:25] 2026-01-26 03:04:42,330 | INFO     | mean y: 2513706.67854251
[2026-01-25 22:05:25] 2026-01-26 03:04:42,330 | INFO     | intersect: -2097871835.596469
[2026-01-25 22:05:25] 2026-01-26 03:04:42,332 | INFO     | chi2: 0.24591713578151658
[2026-01-25 22:05:25] 2026-01-26 03:04:42,332 | INFO     | current memory leak: 1.19 B/s (using 1235 data points, chi2=0.25)
[2026-01-25 22:05:25] 2026-01-26 03:04:42,356 | INFO     | could have reported an average CPU frequency of 2600 MHz (47 samples)
[2026-01-25 22:05:25] 2026-01-26 03:04:42,357 | INFO     | ..............................
[2026-01-25 22:05:25] 2026-01-26 03:04:42,357 | INFO     | . Timing measurements:
[2026-01-25 22:05:25] 2026-01-26 03:04:42,357 | INFO     | . get job = 1 s
[2026-01-25 22:05:25] 2026-01-26 03:04:42,357 | INFO     | . initial setup = 88 s
[2026-01-25 22:05:25] 2026-01-26 03:04:42,357 | INFO     | . payload setup = 72 s
[2026-01-25 22:05:25] 2026-01-26 03:04:42,357 | INFO     | . stage-in = 1 s
[2026-01-25 22:05:25] 2026-01-26 03:04:42,357 | INFO     | . payload execution = 78764 s
[2026-01-25 22:05:25] 2026-01-26 03:04:42,357 | INFO     | . stage-out = 6 s
[2026-01-25 22:05:25] 2026-01-26 03:04:42,357 | INFO     | . log creation = 1 s
[2026-01-25 22:05:25] 2026-01-26 03:04:42,357 | INFO     | ..............................
[2026-01-25 22:05:25] 2026-01-26 03:04:42,646 | INFO     | PID=3471856 has CPU usage=11.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-25 22:05:25] 2026-01-26 03:04:42,646 | INFO     | .. there are 35 such processes running
[2026-01-25 22:05:25] 2026-01-26 03:04:42,946 | INFO     | 
[2026-01-25 22:05:25] 2026-01-26 03:04:42,947 | INFO     | job summary report
[2026-01-25 22:05:25] 2026-01-26 03:04:42,947 | INFO     | --------------------------------------------------
[2026-01-25 22:05:25] 2026-01-26 03:04:42,947 | INFO     | PanDA job id: 6982024072
[2026-01-25 22:05:25] 2026-01-26 03:04:42,947 | INFO     | task id: 48310840
[2026-01-25 22:05:25] 2026-01-26 03:04:42,947 | INFO     | errors: (none)
[2026-01-25 22:05:25] 2026-01-26 03:04:42,947 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-25 22:05:25] 2026-01-26 03:04:42,947 | INFO     | pilot state: finished 
[2026-01-25 22:05:25] 2026-01-26 03:04:42,948 | INFO     | transexitcode: 0
[2026-01-25 22:05:25] 2026-01-26 03:04:42,948 | INFO     | exeerrorcode: 0
[2026-01-25 22:05:25] 2026-01-26 03:04:42,948 | INFO     | exeerrordiag: 
[2026-01-25 22:05:25] 2026-01-26 03:04:42,948 | INFO     | exitcode: 0
[2026-01-25 22:05:25] 2026-01-26 03:04:42,948 | INFO     | exitmsg: OK
[2026-01-25 22:05:25] 2026-01-26 03:04:42,948 | INFO     | cpuconsumptiontime: 49368 s
[2026-01-25 22:05:25] 2026-01-26 03:04:42,948 | INFO     | nevents: 400
[2026-01-25 22:05:25] 2026-01-26 03:04:42,948 | INFO     | neventsw: 0
[2026-01-25 22:05:25] 2026-01-26 03:04:42,948 | INFO     | pid: 3498024
[2026-01-25 22:05:25] 2026-01-26 03:04:42,948 | INFO     | pgrp: 3498024
[2026-01-25 22:05:25] 2026-01-26 03:04:42,949 | INFO     | corecount: 8
[2026-01-25 22:05:25] 2026-01-26 03:04:42,949 | INFO     | event service: False
[2026-01-25 22:05:25] 2026-01-26 03:04:42,949 | INFO     | sizes: {0: 2283119, 1: 2283720, 2: 2283804, 3: 2283832, 4: 2283860, 5: 2283860, 7: 2284477, 20: 2284505, 78843: 2341824, 78851: 2350822, 78852: 2350878, 78857: 235
[2026-01-25 22:05:25] 2026-01-26 03:04:42,949 | INFO     | --------------------------------------------------
[2026-01-25 22:05:25] 2026-01-26 03:04:42,949 | INFO     | 
[2026-01-25 22:05:25] 2026-01-26 03:04:42,949 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-25 22:05:25] 2026-01-26 03:04:42,997 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-25 22:05:25] 2026-01-26 03:04:42,997 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-25 22:05:25] 2026-01-26 03:04:42,997 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-25 22:05:25] 2026-01-26 03:04:42,997 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-25 22:05:25] 2026-01-26 03:04:42,997 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-25 22:05:25] 2026-01-26 03:04:42,997 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-25 22:05:25] 2026-01-26 03:04:42,998 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-25 22:05:25] 2026-01-26 03:04:42,998 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-25 22:05:25] 2026-01-26 03:04:42,998 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-25 22:05:25] 2026-01-26 03:04:42,998 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-25 22:05:25] 2026-01-26 03:04:42,998 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-25 22:05:25] 2026-01-26 03:04:42,998 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-25 22:05:25] 2026-01-26 03:04:42,998 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-25 22:05:25] 2026-01-26 03:04:42,998 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-25 22:05:25] 2026-01-26 03:04:42,998 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-25 22:05:25] 2026-01-26 03:04:42,998 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-25 22:05:25] 2026-01-26 03:04:42,998 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-25 22:05:25] 2026-01-26 03:04:42,999 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-25 22:05:25] 2026-01-26 03:04:42,999 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-25 22:05:25] 2026-01-26 03:04:42,999 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-25 22:05:25] 2026-01-26 03:04:42,999 | INFO     | job 6982024072 has completed (purged errors)
[2026-01-25 22:05:25] 2026-01-26 03:04:42,999 | INFO     | overall cleanup function is called
[2026-01-25 22:05:25] 2026-01-26 03:04:44,012 | INFO     | --- collectZombieJob: --- 10, [3498024]
[2026-01-25 22:05:25] 2026-01-26 03:04:44,013 | INFO     | zombie collector waiting for pid 3498024
[2026-01-25 22:05:25] 2026-01-26 03:04:44,013 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-25 22:05:25] 2026-01-26 03:04:44,013 | INFO     | collected zombie processes
[2026-01-25 22:05:25] 2026-01-26 03:04:44,013 | INFO     | will attempt to kill all subprocesses of pid=3498024
[2026-01-25 22:05:25] 2026-01-26 03:04:48,527 | INFO     | process IDs to be killed: [3498024] (in reverse order)
[2026-01-25 22:05:25] 2026-01-26 03:04:48,840 | WARNING  | found no corresponding commands to process id(s)
[2026-01-25 22:05:25] 2026-01-26 03:04:48,840 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-25 22:05:25] 2026-01-26 03:04:48,979 | INFO     | did not find any defunct processes belonging to 3498024
[2026-01-25 22:05:25] 2026-01-26 03:04:49,124 | INFO     | did not find any defunct processes belonging to 3498024
[2026-01-25 22:05:25] 2026-01-26 03:04:49,125 | INFO     | ready for new job
[2026-01-25 22:05:25] 2026-01-26 03:04:49,125 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-25 22:05:25] 2026-01-26 03:04:49,132 | INFO     | **************************************
[2026-01-25 22:05:25] 2026-01-26 03:04:49,133 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-25 22:05:25] 2026-01-26 03:04:49,133 | INFO     | **************************************
[2026-01-25 22:05:25] 2026-01-26 03:04:49,133 | INFO     | 
[2026-01-25 22:05:25] 2026-01-26 03:04:49,135 | INFO     | architecture information:
[2026-01-25 22:05:25] 2026-01-26 03:04:49,138 | INFO     | executing command: cat /etc/os-release
[2026-01-25 22:05:25] 2026-01-26 03:04:49,180 | INFO     | cat /etc/os-release:
[2026-01-25 22:05:25] NAME="CentOS Linux"
[2026-01-25 22:05:25] VERSION="7 (Core)"
[2026-01-25 22:05:25] ID="centos"
[2026-01-25 22:05:25] ID_LIKE="rhel fedora"
[2026-01-25 22:05:25] VERSION_ID="7"
[2026-01-25 22:05:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-25 22:05:25] ANSI_COLOR="0;31"
[2026-01-25 22:05:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-25 22:05:25] HOME_URL="https://www.centos.org/"
[2026-01-25 22:05:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-25 22:05:25] 
[2026-01-25 22:05:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-25 22:05:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-25 22:05:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-25 22:05:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-25 22:05:25] 
[2026-01-25 22:05:25] 2026-01-26 03:04:49,180 | INFO     | **************************************
[2026-01-25 22:05:25] 2026-01-26 03:04:49,684 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-25 22:05:25] 2026-01-26 03:04:49,926 | INFO     | sufficient remaining disk space (73384591360 B)
[2026-01-25 22:05:25] 2026-01-26 03:04:49,926 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-25 22:05:25] 2026-01-26 03:04:49,927 | INFO     | current server update state: UPDATING_FINAL
[2026-01-25 22:05:25] 2026-01-26 03:04:49,927 | INFO     | update_server=False
[2026-01-25 22:05:25] 2026-01-26 03:04:49,927 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-25 22:05:25] 2026-01-26 03:04:49,927 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-25 22:05:25] 2026-01-26 03:04:49,928 | INFO     | aborting loop
[2026-01-25 22:05:25] 2026-01-26 03:04:49,945 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-25 22:05:25] 2026-01-26 03:04:50,383 | INFO     | all payload control threads have been joined
[2026-01-25 22:05:25] 2026-01-26 03:04:50,555 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-25 22:05:25] 2026-01-26 03:04:50,937 | INFO     | [job] retrieve thread has finished
[2026-01-25 22:05:25] 2026-01-26 03:04:50,944 | INFO     | all job control threads have been joined
[2026-01-25 22:05:25] 2026-01-26 03:04:50,951 | INFO     | [job] job monitor thread has finished
[2026-01-25 22:05:25] 2026-01-26 03:04:50,970 | INFO     | all data control threads have been joined
[2026-01-25 22:05:25] 2026-01-26 03:04:51,161 | INFO     | [job] validate thread has finished
[2026-01-25 22:05:25] 2026-01-26 03:04:51,168 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-25 22:05:25] 2026-01-26 03:04:51,430 | INFO     | [payload] control thread has finished
[2026-01-25 22:05:25] 2026-01-26 03:04:51,659 | INFO     | [payload] validate_pre thread has finished
[2026-01-25 22:05:25] 2026-01-26 03:04:51,661 | INFO     | [payload] failed_post thread has finished
[2026-01-25 22:05:25] 2026-01-26 03:04:51,665 | INFO     | [payload] execute_payloads thread has finished
[2026-01-25 22:05:25] 2026-01-26 03:04:51,758 | INFO     | [job] create_data_payload thread has finished
[2026-01-25 22:05:25] 2026-01-26 03:04:51,950 | INFO     | [job] control thread has finished
[2026-01-25 22:05:25] 2026-01-26 03:04:51,990 | INFO     | [data] control thread has finished
[2026-01-25 22:05:25] 2026-01-26 03:04:52,123 | INFO     | [data] copytool_in thread has finished
[2026-01-25 22:05:25] 2026-01-26 03:04:52,159 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-25 22:05:25] 2026-01-26 03:04:52,499 | INFO     | [payload] validate_post thread has finished
[2026-01-25 22:05:25] 2026-01-26 03:04:52,569 | INFO     | [data] copytool_out thread has finished
[2026-01-25 22:05:25] 2026-01-26 03:04:53,165 | INFO     | [job] queue monitor thread has finished
[2026-01-25 22:05:25] 2026-01-26 03:04:54,070 | INFO     | [data] queue_monitor thread has finished
[2026-01-25 22:05:25] 2026-01-26 03:04:59,522 | INFO     | [monitor] cgroup control has ended
[2026-01-25 22:05:25] 2026-01-26 03:05:00,652 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139643906500416)>', '<ExcThread(monitor, started 139643269932800)>']
[2026-01-25 22:05:25] 2026-01-26 03:05:05,678 | INFO     | all workflow threads have been joined
[2026-01-25 22:05:25] 2026-01-26 03:05:05,679 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-25 22:05:25] 2026-01-26 03:05:05,679 | INFO     | traces error code: 0
[2026-01-25 22:05:25] 2026-01-26 03:05:05,679 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-25 22:05:25] 2026-01-26 03:05:22,173 | INFO     | PID=3471856 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-25 22:05:25] 2026-01-26 03:05:22,174 | INFO     | .. there are 35 such processes running
[2026-01-25 22:05:25] 2026-01-26 03:05:22,175 | INFO     | found 0 job(s) in 20 queues
[2026-01-25 22:05:25] 2026-01-26 03:05:22,175 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-25 22:05:25] 2026-01-26 03:05:22,175 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-25 22:05:25] 2026-01-26 03:05:22,175 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-25 22:05:25] 2026-01-26 03:05:22,175 | INFO     | [monitor] control thread has ended
[2026-01-25 22:05:25] 2026-01-26 03:05:24,145 [wrapper] ==== pilot stdout END ====
[2026-01-25 22:05:25] 2026-01-26 03:05:24,213 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-25 22:05:25] 2026-01-26 03:05:24,278 [wrapper] pilotpid: 3471856
[2026-01-25 22:05:25] 2026-01-26 03:05:24,297 [wrapper] Pilot exit status: 0
[2026-01-25 22:05:25] 2026-01-26 03:05:24,411 [wrapper] pandaids: 6982024072
[2026-01-25 22:05:25] 2026-01-26 03:05:24,590 [wrapper] cleanup supervisor_pilot 4150000 3471857
[2026-01-25 22:05:25] 2026-01-26 03:05:24,594 [wrapper] Test setup, not cleaning
[2026-01-25 22:05:25] 2026-01-26 03:05:24,598 [wrapper] apfmon messages muted
[2026-01-25 22:05:25] 2026-01-26 03:05:24,601 [wrapper] ==== wrapper stdout END ====
[2026-01-25 22:05:25] 2026-01-26 03:05:24,604 [wrapper] ==== wrapper stderr END ====
[2026-01-25 22:05:25]  *** Error codes and diagnostics ***
[2026-01-25 22:05:25]     "exeErrorCode": 0,
[2026-01-25 22:05:25]     "exeErrorDiag": "",
[2026-01-25 22:05:25]     "pilotErrorCode": 0,
[2026-01-25 22:05:25]     "pilotErrorDiag": "",
[2026-01-25 22:05:25]  *** Listing of results directory ***
[2026-01-25 22:05:25] total 739148
[2026-01-25 22:05:25] -rw-r--r--. 1 boincer umatlas    584422 Jan 24 19:25 pilot3.tar.gz
[2026-01-25 22:05:25] -rwx------. 1 boincer umatlas     36322 Jan 24 19:28 runpilot2-wrapper.sh
[2026-01-25 22:05:25] -rw-r--r--. 1 boincer umatlas      5111 Jan 24 19:32 queuedata.json
[2026-01-25 22:05:25] -rw-r--r--. 1 boincer umatlas       100 Jan 25 00:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-25 22:05:25] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 25 00:06 run_atlas
[2026-01-25 22:05:25] -rw-r--r--. 1 boincer umatlas       105 Jan 25 00:06 job.xml
[2026-01-25 22:05:25] -rw-r--r--. 2 boincer umatlas 534491739 Jan 25 00:06 EVNT.48310836._000044.pool.root.1
[2026-01-25 22:05:25] -rw-r--r--. 2 boincer umatlas     15845 Jan 25 00:06 start_atlas.sh
[2026-01-25 22:05:25] drwxrwx--x. 2 boincer umatlas      4096 Jan 25 00:06 shared
[2026-01-25 22:05:25] -rw-r--r--. 2 boincer umatlas    597757 Jan 25 00:06 input.tar.gz
[2026-01-25 22:05:25] -rw-r--r--. 1 boincer umatlas         0 Jan 25 00:06 boinc_lockfile
[2026-01-25 22:05:25] -rw-r--r--. 1 boincer umatlas      2500 Jan 25 00:06 pandaJob.out
[2026-01-25 22:05:25] -rw-------. 1 boincer umatlas        57 Jan 25 00:06 setup.sh.local
[2026-01-25 22:05:25] -rw-------. 1 boincer umatlas       440 Jan 25 00:09 workernode_map.json
[2026-01-25 22:05:25] -rw-------. 1 boincer umatlas   1004254 Jan 25 00:10 agis_schedconf.cvmfs.json
[2026-01-25 22:05:25] drwx------. 5 boincer umatlas      4096 Jan 25 00:10 pilot3
[2026-01-25 22:05:25] -rw-r--r--. 1 boincer umatlas      6660 Jan 25 22:01 init_data.xml
[2026-01-25 22:05:25] -rw-------. 1 boincer umatlas 200875282 Jan 25 22:01 HITS.48310840._002060.pool.root.1
[2026-01-25 22:05:25] -rw-r--r--. 1 boincer umatlas       532 Jan 25 22:02 boinc_task_state.xml
[2026-01-25 22:05:25] -rw-------. 1 boincer umatlas      1052 Jan 25 22:04 memory_monitor_summary.json
[2026-01-25 22:05:25] -rw-------. 1 boincer umatlas   1516246 Jan 25 22:04 agis_ddmendpoints.agis.ALL.json
[2026-01-25 22:05:25] -rw-------. 1 boincer umatlas   1119675 Jan 25 22:04 log.48310840._002060.job.log.tgz.1
[2026-01-25 22:05:25] -rw-------. 1 boincer umatlas      6409 Jan 25 22:04 heartbeat.json
[2026-01-25 22:05:25] -rw-r--r--. 1 boincer umatlas      8192 Jan 25 22:04 boinc_mmap_file
[2026-01-25 22:05:25] -rw-r--r--. 1 boincer umatlas        28 Jan 25 22:04 wrapper_checkpoint.txt
[2026-01-25 22:05:25] -rw-------. 1 boincer umatlas        95 Jan 25 22:05 pilot_heartbeat.json
[2026-01-25 22:05:25] -rw-------. 1 boincer umatlas       823 Jan 25 22:05 pilotlog.txt
[2026-01-25 22:05:25] -rw-------. 1 boincer umatlas   7671420 Jan 25 22:05 log.48310840._002060.job.log.1
[2026-01-25 22:05:25] -rw-------. 1 boincer umatlas       357 Jan 25 22:05 output.list
[2026-01-25 22:05:25] -rw-r--r--. 1 boincer umatlas       620 Jan 25 22:05 runtime_log
[2026-01-25 22:05:25] -rw-------. 1 boincer umatlas   8806400 Jan 25 22:05 result.tar.gz
[2026-01-25 22:05:25] -rw-r--r--. 1 boincer umatlas      9332 Jan 25 22:05 runtime_log.err
[2026-01-25 22:05:25] -rw-------. 1 boincer umatlas       657 Jan 25 22:05 9USMDmZA338nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8J6KDmE4ne0m.diag
[2026-01-25 22:05:25] -rw-r--r--. 1 boincer umatlas     21252 Jan 25 22:05 stderr.txt
[2026-01-25 22:05:25] HITS file was successfully produced:
[2026-01-25 22:05:25] -rw-------. 1 boincer umatlas 200875282 Jan 25 22:01 shared/HITS.pool.root.1
[2026-01-25 22:05:25]  *** Contents of shared directory: ***
[2026-01-25 22:05:25] total 727344
[2026-01-25 22:05:25] -rw-r--r--. 2 boincer umatlas 534491739 Jan 25 00:06 ATLAS.root_0
[2026-01-25 22:05:25] -rw-r--r--. 2 boincer umatlas     15845 Jan 25 00:06 start_atlas.sh
[2026-01-25 22:05:25] -rw-r--r--. 2 boincer umatlas    597757 Jan 25 00:06 input.tar.gz
[2026-01-25 22:05:25] -rw-------. 1 boincer umatlas 200875282 Jan 25 22:01 HITS.pool.root.1
[2026-01-25 22:05:25] -rw-------. 1 boincer umatlas   8806400 Jan 25 22:05 result.tar.gz
22:05:26 (3461906): run_atlas exited; CPU time 52739.798972
22:05:26 (3461906): called boinc_finish(0)

</stderr_txt>
]]>

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