Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:26:23 (4931): wrapper (7.7.26015): starting
12:26:23 (4931): wrapper: running run_atlas (--nthreads 8)
[2026-01-25 12:26:23] Arguments: --nthreads 8
[2026-01-25 12:26:23] Threads: 8
[2026-01-25 12:26:23] Checking for CVMFS
[2026-01-25 12:26:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-25 12:26:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-25 12:26:24] Running cvmfs_config stat atlas.cern.ch
[2026-01-25 12:26:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-25 12:26:24] 2.11.2.0 24514 58394 137180 155507 1 257 19603652 25165825 3608 130560 0 23963530 99.816 16359082 3322 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-25 12:26:24] CVMFS is ok
[2026-01-25 12:26:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-25 12:26:24] Checking for apptainer binary...
[2026-01-25 12:26:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-25 12:26:24] Running /usr/bin/apptainer --version
[2026-01-25 12:26:24] apptainer version 1.3.2-1.el7
[2026-01-25 12:26:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-25 12:26:26] cg-vwn473.simple-grid.lan
[2026-01-25 12:26:26] apptainer works
[2026-01-25 12:26:26] Set ATHENA_PROC_NUMBER=8
[2026-01-25 12:26:26] Set ATHENA_CORE_NUMBER=8
[2026-01-25 12:26:26] Starting ATLAS job with PandaID=6981422826
[2026-01-25 12:26:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-25 16:17:29]  *** The last 200 lines of the pilot log: ***
[2026-01-25 16:17:29] 2026-01-25 15:16:42,224 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6981422826/memory_monitor_summary.json (trf name=prmon)
[2026-01-25 16:17:29] 2026-01-25 15:16:42,225 | INFO     | extracted standard info from prmon json
[2026-01-25 16:17:29] 2026-01-25 15:16:42,225 | INFO     | extracted standard memory fields from prmon json
[2026-01-25 16:17:29] 2026-01-25 15:16:42,225 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-25 16:17:29] 2026-01-25 15:16:42,226 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-25 16:17:29] 2026-01-25 15:16:42,226 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-25 16:17:29] 2026-01-25 15:16:42,230 | INFO     | fitting pss+swap vs Time
[2026-01-25 16:17:29] 2026-01-25 15:16:42,230 | INFO     | sum of square deviations: 3579276412.5
[2026-01-25 16:17:29] 2026-01-25 15:16:42,232 | INFO     | sum of deviations: -21326006870.0
[2026-01-25 16:17:29] 2026-01-25 15:16:42,233 | INFO     | mean x: 1769347302.5
[2026-01-25 16:17:29] 2026-01-25 15:16:42,233 | INFO     | mean y: 2507132.9115044246
[2026-01-25 16:17:29] 2026-01-25 15:16:42,233 | INFO     | intersect: 10544613519.765182
[2026-01-25 16:17:29] 2026-01-25 15:16:42,233 | INFO     | chi2: 2.5459317953716494
[2026-01-25 16:17:29] 2026-01-25 15:16:42,234 | INFO     | sum of square deviations: 3346927870.0
[2026-01-25 16:17:29] 2026-01-25 15:16:42,236 | INFO     | sum of deviations: -5284098769.999996
[2026-01-25 16:17:29] 2026-01-25 15:16:42,236 | INFO     | mean x: 1769347150.0
[2026-01-25 16:17:29] 2026-01-25 15:16:42,236 | INFO     | mean y: 2517479.2081447965
[2026-01-25 16:17:29] 2026-01-25 15:16:42,236 | INFO     | intersect: 2795946397.357492
[2026-01-25 16:17:29] 2026-01-25 15:16:42,236 | INFO     | chi2: 1.7181314801207284
[2026-01-25 16:17:29] 2026-01-25 15:16:42,237 | INFO     | current chi2=1.7181314801207284 (change=32.51463046872709 %)
[2026-01-25 16:17:29] 2026-01-25 15:16:42,237 | INFO     | sum of square deviations: 3124858590.0
[2026-01-25 16:17:29] 2026-01-25 15:16:42,239 | INFO     | sum of deviations: -5026166461.499998
[2026-01-25 16:17:29] 2026-01-25 15:16:42,239 | INFO     | mean x: 1769346997.5
[2026-01-25 16:17:29] 2026-01-25 15:16:42,239 | INFO     | mean y: 2517656.337962963
[2026-01-25 16:17:29] 2026-01-25 15:16:42,239 | INFO     | intersect: 2848416848.720368
[2026-01-25 16:17:29] 2026-01-25 15:16:42,240 | INFO     | chi2: 1.7179583458345227
[2026-01-25 16:17:29] 2026-01-25 15:16:42,240 | INFO     | current chi2=1.7179583458345227 (change=0.010076893893680583 %)
[2026-01-25 16:17:29] 2026-01-25 15:16:42,243 | INFO     | right removable region: 215
[2026-01-25 16:17:29] 2026-01-25 15:16:42,244 | INFO     | sum of square deviations: 3346927870.0
[2026-01-25 16:17:29] 2026-01-25 15:16:42,245 | INFO     | sum of deviations: -56475009386.0
[2026-01-25 16:17:29] 2026-01-25 15:16:42,246 | INFO     | mean x: 1769347455.0
[2026-01-25 16:17:29] 2026-01-25 15:16:42,246 | INFO     | mean y: 2529978.619909502
[2026-01-25 16:17:29] 2026-01-25 15:16:42,246 | INFO     | intersect: 29857943064.716747
[2026-01-25 16:17:29] 2026-01-25 15:16:42,246 | INFO     | chi2: 1.0659077209607124
[2026-01-25 16:17:29] 2026-01-25 15:16:42,246 | INFO     | current chi2=1.0659077209607124 (change=58.13290352481286 %)
[2026-01-25 16:17:29] 2026-01-25 15:16:42,247 | INFO     | sum of square deviations: 3124858590.0
[2026-01-25 16:17:29] 2026-01-25 15:16:42,248 | INFO     | sum of deviations: -56503514716.49999
[2026-01-25 16:17:29] 2026-01-25 15:16:42,249 | INFO     | mean x: 1769347607.5
[2026-01-25 16:17:29] 2026-01-25 15:16:42,249 | INFO     | mean y: 2529962.1342592593
[2026-01-25 16:17:29] 2026-01-25 15:16:42,249 | INFO     | intersect: 31995772440.021973
[2026-01-25 16:17:29] 2026-01-25 15:16:42,249 | INFO     | chi2: 1.0454803259703478
[2026-01-25 16:17:29] 2026-01-25 15:16:42,249 | INFO     | current chi2=1.0454803259703478 (change=1.9164318438328987 %)
[2026-01-25 16:17:29] 2026-01-25 15:16:42,249 | INFO     | left removable region: 20
[2026-01-25 16:17:29] 2026-01-25 15:16:42,250 | INFO     | sum of square deviations: 2299168690.0
[2026-01-25 16:17:29] 2026-01-25 15:16:42,251 | INFO     | sum of deviations: -26292665178.0
[2026-01-25 16:17:29] 2026-01-25 15:16:42,251 | INFO     | mean x: 1769347577.0
[2026-01-25 16:17:29] 2026-01-25 15:16:42,251 | INFO     | mean y: 2531650.687179487
[2026-01-25 16:17:29] 2026-01-25 15:16:42,251 | INFO     | intersect: 20236307287.900898
[2026-01-25 16:17:29] 2026-01-25 15:16:42,252 | INFO     | chi2: 0.16397186308085146
[2026-01-25 16:17:29] 2026-01-25 15:16:42,252 | INFO     | current memory leak: -11.44 B/s (using 195 data points, chi2=0.16)
[2026-01-25 16:17:29] 2026-01-25 15:16:42,256 | INFO     | could have reported an average CPU frequency of 2249 MHz (11 samples)
[2026-01-25 16:17:29] 2026-01-25 15:16:42,256 | INFO     | ..............................
[2026-01-25 16:17:29] 2026-01-25 15:16:42,256 | INFO     | . Timing measurements:
[2026-01-25 16:17:29] 2026-01-25 15:16:42,256 | INFO     | . get job = 0 s
[2026-01-25 16:17:29] 2026-01-25 15:16:42,256 | INFO     | . initial setup = 8 s
[2026-01-25 16:17:29] 2026-01-25 15:16:42,256 | INFO     | . payload setup = 9 s
[2026-01-25 16:17:29] 2026-01-25 15:16:42,257 | INFO     | . stage-in = 0 s
[2026-01-25 16:17:29] 2026-01-25 15:16:42,257 | INFO     | . payload execution = 13764 s
[2026-01-25 16:17:29] 2026-01-25 15:16:42,257 | INFO     | . stage-out = 3 s
[2026-01-25 16:17:29] 2026-01-25 15:16:42,257 | INFO     | . log creation = 1 s
[2026-01-25 16:17:29] 2026-01-25 15:16:42,257 | INFO     | ..............................
[2026-01-25 16:17:29] 2026-01-25 15:16:42,606 | INFO     | 
[2026-01-25 16:17:29] 2026-01-25 15:16:42,606 | INFO     | job summary report
[2026-01-25 16:17:29] 2026-01-25 15:16:42,607 | INFO     | --------------------------------------------------
[2026-01-25 16:17:29] 2026-01-25 15:16:42,607 | INFO     | PanDA job id: 6981422826
[2026-01-25 16:17:29] 2026-01-25 15:16:42,607 | INFO     | task id: 48310724
[2026-01-25 16:17:29] 2026-01-25 15:16:42,607 | INFO     | errors: (none)
[2026-01-25 16:17:29] 2026-01-25 15:16:42,607 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-25 16:17:29] 2026-01-25 15:16:42,607 | INFO     | pilot state: finished 
[2026-01-25 16:17:29] 2026-01-25 15:16:42,607 | INFO     | transexitcode: 0
[2026-01-25 16:17:29] 2026-01-25 15:16:42,607 | INFO     | exeerrorcode: 0
[2026-01-25 16:17:29] 2026-01-25 15:16:42,607 | INFO     | exeerrordiag: 
[2026-01-25 16:17:29] 2026-01-25 15:16:42,608 | INFO     | exitcode: 0
[2026-01-25 16:17:29] 2026-01-25 15:16:42,608 | INFO     | exitmsg: OK
[2026-01-25 16:17:29] 2026-01-25 15:16:42,608 | INFO     | cpuconsumptiontime: 52175 s
[2026-01-25 16:17:29] 2026-01-25 15:16:42,608 | INFO     | nevents: 400
[2026-01-25 16:17:29] 2026-01-25 15:16:42,608 | INFO     | neventsw: 0
[2026-01-25 16:17:29] 2026-01-25 15:16:42,608 | INFO     | pid: 13111
[2026-01-25 16:17:29] 2026-01-25 15:16:42,608 | INFO     | pgrp: 13111
[2026-01-25 16:17:29] 2026-01-25 15:16:42,608 | INFO     | corecount: 8
[2026-01-25 16:17:29] 2026-01-25 15:16:42,608 | INFO     | event service: False
[2026-01-25 16:17:29] 2026-01-25 15:16:42,608 | INFO     | sizes: {0: 2284254, 1: 2284254, 13778: 2314446, 13782: 2323446, 13783: 2323502, 13785: 2323696}
[2026-01-25 16:17:29] 2026-01-25 15:16:42,609 | INFO     | --------------------------------------------------
[2026-01-25 16:17:29] 2026-01-25 15:16:42,609 | INFO     | 
[2026-01-25 16:17:29] 2026-01-25 15:16:42,609 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2026-01-25 16:17:29] 2026-01-25 15:16:43,036 | INFO     | time since job start (13788s) is within the limit (349056.0s)
[2026-01-25 16:17:29] 2026-01-25 15:16:43,130 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-25 16:17:29] 2026-01-25 15:16:43,131 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-25 16:17:29] 2026-01-25 15:16:43,131 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-25 16:17:29] 2026-01-25 15:16:43,131 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-25 16:17:29] 2026-01-25 15:16:43,131 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-25 16:17:29] 2026-01-25 15:16:43,131 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-25 16:17:29] 2026-01-25 15:16:43,131 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-25 16:17:29] 2026-01-25 15:16:43,131 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-25 16:17:29] 2026-01-25 15:16:43,132 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-25 16:17:29] 2026-01-25 15:16:43,132 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-25 16:17:29] 2026-01-25 15:16:43,132 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-25 16:17:29] 2026-01-25 15:16:43,132 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-25 16:17:29] 2026-01-25 15:16:43,132 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-25 16:17:29] 2026-01-25 15:16:43,132 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-25 16:17:29] 2026-01-25 15:16:43,132 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-25 16:17:29] 2026-01-25 15:16:43,132 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-25 16:17:29] 2026-01-25 15:16:43,132 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-25 16:17:29] 2026-01-25 15:16:43,133 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-25 16:17:29] 2026-01-25 15:16:43,133 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-25 16:17:29] 2026-01-25 15:16:43,133 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-25 16:17:29] 2026-01-25 15:16:43,133 | INFO     | job 6981422826 has completed (purged errors)
[2026-01-25 16:17:29] 2026-01-25 15:16:43,133 | INFO     | overall cleanup function is called
[2026-01-25 16:17:29] 2026-01-25 15:16:44,142 | INFO     | --- collectZombieJob: --- 10, [13111]
[2026-01-25 16:17:29] 2026-01-25 15:16:44,142 | INFO     | zombie collector waiting for pid 13111
[2026-01-25 16:17:29] 2026-01-25 15:16:44,142 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-25 16:17:29] 2026-01-25 15:16:44,143 | INFO     | collected zombie processes
[2026-01-25 16:17:29] 2026-01-25 15:16:44,143 | INFO     | will attempt to kill all subprocesses of pid=13111
[2026-01-25 16:17:29] 2026-01-25 15:16:44,291 | INFO     | process IDs to be killed: [13111] (in reverse order)
[2026-01-25 16:17:29] 2026-01-25 15:16:45,106 | WARNING  | found no corresponding commands to process id(s)
[2026-01-25 16:17:29] 2026-01-25 15:16:45,106 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-25 16:17:29] 2026-01-25 15:16:45,110 | INFO     | did not find any defunct processes belonging to 13111
[2026-01-25 16:17:29] 2026-01-25 15:16:45,113 | INFO     | did not find any defunct processes belonging to 13111
[2026-01-25 16:17:29] 2026-01-25 15:16:45,113 | INFO     | ready for new job
[2026-01-25 16:17:29] 2026-01-25 15:16:45,113 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-25 16:17:29] 2026-01-25 15:16:45,115 | INFO     | **************************************
[2026-01-25 16:17:29] 2026-01-25 15:16:45,115 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-25 16:17:29] 2026-01-25 15:16:45,115 | INFO     | **************************************
[2026-01-25 16:17:29] 2026-01-25 15:16:45,115 | INFO     | 
[2026-01-25 16:17:29] 2026-01-25 15:16:45,116 | INFO     | pilot is running in a VM
[2026-01-25 16:17:29] 2026-01-25 15:16:45,116 | INFO     | architecture information:
[2026-01-25 16:17:29] 2026-01-25 15:16:45,119 | INFO     | executing command: cat /etc/os-release
[2026-01-25 16:17:29] 2026-01-25 15:16:45,410 | INFO     | cat /etc/os-release:
[2026-01-25 16:17:29] NAME="CentOS Linux"
[2026-01-25 16:17:29] VERSION="7 (Core)"
[2026-01-25 16:17:29] ID="centos"
[2026-01-25 16:17:29] ID_LIKE="rhel fedora"
[2026-01-25 16:17:29] VERSION_ID="7"
[2026-01-25 16:17:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-25 16:17:29] ANSI_COLOR="0;31"
[2026-01-25 16:17:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-25 16:17:29] HOME_URL="https://www.centos.org/"
[2026-01-25 16:17:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-25 16:17:29] 
[2026-01-25 16:17:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-25 16:17:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-25 16:17:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-25 16:17:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-25 16:17:29] 
[2026-01-25 16:17:29] 2026-01-25 15:16:45,410 | INFO     | **************************************
[2026-01-25 16:17:29] 2026-01-25 15:16:45,913 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2026-01-25 16:17:29] 2026-01-25 15:16:46,136 | INFO     | sufficient remaining disk space (496783851520 B)
[2026-01-25 16:17:29] 2026-01-25 15:16:46,136 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-25 16:17:29] 2026-01-25 15:16:46,136 | INFO     | current server update state: UPDATING_FINAL
[2026-01-25 16:17:29] 2026-01-25 15:16:46,136 | INFO     | update_server=False
[2026-01-25 16:17:29] 2026-01-25 15:16:46,136 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-25 16:17:29] 2026-01-25 15:16:46,205 | INFO     | all data control threads have been joined
[2026-01-25 16:17:29] 2026-01-25 15:16:46,585 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-25 16:17:29] 2026-01-25 15:16:46,585 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-25 16:17:29] 2026-01-25 15:16:46,586 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-25 16:17:29] 2026-01-25 15:16:46,586 | INFO     | will abort loop
[2026-01-25 16:17:29] 2026-01-25 15:16:46,674 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-25 16:17:29] 2026-01-25 15:16:46,858 | INFO     | all job control threads have been joined
[2026-01-25 16:17:29] 2026-01-25 15:16:46,948 | INFO     | all payload control threads have been joined
[2026-01-25 16:17:29] 2026-01-25 15:16:47,068 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-25 16:17:29] 2026-01-25 15:16:47,142 | INFO     | [job] retrieve thread has finished
[2026-01-25 16:17:29] 2026-01-25 15:16:47,211 | INFO     | [data] control thread has finished
[2026-01-25 16:17:29] 2026-01-25 15:16:47,312 | INFO     | [payload] validate_post thread has finished
[2026-01-25 16:17:29] 2026-01-25 15:16:47,404 | INFO     | [job] validate thread has finished
[2026-01-25 16:17:29] 2026-01-25 15:16:47,412 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-25 16:17:29] 2026-01-25 15:16:47,577 | INFO     | [payload] validate_pre thread has finished
[2026-01-25 16:17:29] 2026-01-25 15:16:47,593 | INFO     | [job] job monitor thread has finished
[2026-01-25 16:17:29] 2026-01-25 15:16:47,633 | INFO     | [job] create_data_payload thread has finished
[2026-01-25 16:17:29] 2026-01-25 15:16:47,863 | INFO     | [job] control thread has finished
[2026-01-25 16:17:29] 2026-01-25 15:16:47,954 | INFO     | [payload] control thread has finished
[2026-01-25 16:17:29] 2026-01-25 15:16:48,013 | INFO     | [payload] execute_payloads thread has finished
[2026-01-25 16:17:29] 2026-01-25 15:16:48,029 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-25 16:17:29] 2026-01-25 15:16:48,090 | INFO     | [data] copytool_in thread has finished
[2026-01-25 16:17:29] 2026-01-25 15:16:48,418 | INFO     | [job] queue monitor thread has finished
[2026-01-25 16:17:29] 2026-01-25 15:16:48,638 | INFO     | [payload] failed_post thread has finished
[2026-01-25 16:17:29] 2026-01-25 15:16:49,076 | INFO     | [data] copytool_out thread has finished
[2026-01-25 16:17:29] 2026-01-25 15:16:50,687 | INFO     | [data] queue_monitor thread has finished
[2026-01-25 16:17:29] 2026-01-25 15:17:16,206 | INFO     | PID=8689 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-25 16:17:29] 2026-01-25 15:17:16,207 | INFO     | .. there are 9 such processes running
[2026-01-25 16:17:29] 2026-01-25 15:17:16,207 | INFO     | found 0 job(s) in 20 queues
[2026-01-25 16:17:29] 2026-01-25 15:17:16,207 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-25 16:17:29] 2026-01-25 15:17:16,207 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-25 16:17:29] 2026-01-25 15:17:19,392 | INFO     | [monitor] cgroup control has ended
[2026-01-25 16:17:29] 2026-01-25 15:17:20,470 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140400697870144)>', '<ExcThread(monitor, started 140400115308288)>']
[2026-01-25 16:17:29] 2026-01-25 15:17:21,236 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-25 16:17:29] 2026-01-25 15:17:21,236 | INFO     | [monitor] control thread has ended
[2026-01-25 16:17:29] 2026-01-25 15:17:25,496 | INFO     | all workflow threads have been joined
[2026-01-25 16:17:29] 2026-01-25 15:17:25,496 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-25 16:17:29] 2026-01-25 15:17:25,497 | INFO     | traces error code: 0
[2026-01-25 16:17:29] 2026-01-25 15:17:25,497 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-25 16:17:29] 2026-01-25 15:17:25,899 [wrapper] ==== pilot stdout END ====
[2026-01-25 16:17:29] 2026-01-25 15:17:25,998 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-25 16:17:29] 2026-01-25 15:17:26,052 [wrapper] pilotpid: 8689
[2026-01-25 16:17:29] 2026-01-25 15:17:26,139 [wrapper] Pilot exit status: 0
[2026-01-25 16:17:29] 2026-01-25 15:17:26,582 [wrapper] pandaids: 6981422826
[2026-01-25 16:17:29] 2026-01-25 15:17:27,192 [wrapper] cleanup supervisor_pilot 17308 8690
[2026-01-25 16:17:29] 2026-01-25 15:17:27,310 [wrapper] Test setup, not cleaning
[2026-01-25 16:17:29] 2026-01-25 15:17:27,414 [wrapper] apfmon messages muted
[2026-01-25 16:17:29] 2026-01-25 15:17:27,520 [wrapper] ==== wrapper stdout END ====
[2026-01-25 16:17:29] 2026-01-25 15:17:27,614 [wrapper] ==== wrapper stderr END ====
[2026-01-25 16:17:29]  *** Error codes and diagnostics ***
[2026-01-25 16:17:29]     "exeErrorCode": 0,
[2026-01-25 16:17:29]     "exeErrorDiag": "",
[2026-01-25 16:17:29]     "pilotErrorCode": 0,
[2026-01-25 16:17:29]     "pilotErrorDiag": "",
[2026-01-25 16:17:29]  *** Listing of results directory ***
[2026-01-25 16:17:29] total 667636
[2026-01-25 16:17:29] -rw-r--r--. 1 boinc boinc    584422 Jan 24 17:59 pilot3.tar.gz
[2026-01-25 16:17:29] -rwx------. 1 boinc boinc     36322 Jan 24 18:04 runpilot2-wrapper.sh
[2026-01-25 16:17:29] -rw-r--r--. 1 boinc boinc      5111 Jan 24 18:07 queuedata.json
[2026-01-25 16:17:29] -rw-r--r--. 1 boinc boinc       100 Jan 25 12:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-25 16:17:29] -rwxr-xr-x. 1 boinc boinc      7986 Jan 25 12:26 run_atlas
[2026-01-25 16:17:29] -rw-r--r--. 1 boinc boinc       105 Jan 25 12:26 job.xml
[2026-01-25 16:17:29] -rw-r--r--. 2 boinc boinc 492967480 Jan 25 12:26 EVNT.48310721._000064.pool.root.1
[2026-01-25 16:17:29] -rw-r--r--. 2 boinc boinc     15845 Jan 25 12:26 start_atlas.sh
[2026-01-25 16:17:29] drwxrwx--x. 2 boinc boinc        68 Jan 25 12:26 shared
[2026-01-25 16:17:29] -rw-r--r--. 2 boinc boinc    597760 Jan 25 12:26 input.tar.gz
[2026-01-25 16:17:29] -rw-r--r--. 1 boinc boinc      6392 Jan 25 12:26 init_data.xml
[2026-01-25 16:17:29] -rw-r--r--. 1 boinc boinc         0 Jan 25 12:26 boinc_lockfile
[2026-01-25 16:17:29] -rw-r--r--. 1 boinc boinc      2534 Jan 25 12:26 pandaJob.out
[2026-01-25 16:17:29] -rw-------. 1 boinc boinc   1004254 Jan 25 12:26 agis_schedconf.cvmfs.json
[2026-01-25 16:17:29] -rw-------. 1 boinc boinc       415 Jan 25 12:26 workernode_map.json
[2026-01-25 16:17:29] drwx------. 5 boinc boinc      4096 Jan 25 12:26 pilot3
[2026-01-25 16:17:29] -rw-------. 1 boinc boinc 181965021 Jan 25 16:15 HITS.48310724._003181.pool.root.1
[2026-01-25 16:17:29] -rw-r--r--. 1 boinc boinc       531 Jan 25 16:15 boinc_task_state.xml
[2026-01-25 16:17:29] -rw-------. 1 boinc boinc        95 Jan 25 16:16 pilot_heartbeat.json
[2026-01-25 16:17:29] -rw-------. 1 boinc boinc      1021 Jan 25 16:16 memory_monitor_summary.json
[2026-01-25 16:17:29] -rw-------. 1 boinc boinc   1516246 Jan 25 16:16 agis_ddmendpoints.agis.ALL.json
[2026-01-25 16:17:29] -rw-------. 1 boinc boinc    476827 Jan 25 16:16 log.48310724._003181.job.log.tgz.1
[2026-01-25 16:17:29] -rw-------. 1 boinc boinc      6321 Jan 25 16:16 heartbeat.json
[2026-01-25 16:17:29] -rw-r--r--. 1 boinc boinc      8192 Jan 25 16:17 boinc_mmap_file
[2026-01-25 16:17:29] -rw-r--r--. 1 boinc boinc        28 Jan 25 16:17 wrapper_checkpoint.txt
[2026-01-25 16:17:29] -rw-------. 1 boinc boinc      5066 Jan 25 16:17 pilotlog.txt
[2026-01-25 16:17:29] -rw-------. 1 boinc boinc   1922802 Jan 25 16:17 log.48310724._003181.job.log.1
[2026-01-25 16:17:29] -rw-------. 1 boinc boinc       357 Jan 25 16:17 output.list
[2026-01-25 16:17:29] -rw-r--r--. 1 boinc boinc       620 Jan 25 16:17 runtime_log
[2026-01-25 16:17:29] -rw-------. 1 boinc boinc   2416640 Jan 25 16:17 result.tar.gz
[2026-01-25 16:17:29] -rw-r--r--. 1 boinc boinc      8832 Jan 25 16:17 runtime_log.err
[2026-01-25 16:17:29] -rw-------. 1 boinc boinc       655 Jan 25 16:17 exSNDmeEw38n9Rq4apOajLDm4fhM0noT9bVo0NGKDmw4yKDmGPaJ6n.diag
[2026-01-25 16:17:29] -rw-r--r--. 1 boinc boinc     20716 Jan 25 16:17 stderr.txt
[2026-01-25 16:17:30] HITS file was successfully produced:
[2026-01-25 16:17:30] -rw-------. 1 boinc boinc 181965021 Jan 25 16:15 shared/HITS.pool.root.1
[2026-01-25 16:17:30]  *** Contents of shared directory: ***
[2026-01-25 16:17:30] total 662080
[2026-01-25 16:17:30] -rw-r--r--. 2 boinc boinc 492967480 Jan 25 12:26 ATLAS.root_0
[2026-01-25 16:17:30] -rw-r--r--. 2 boinc boinc     15845 Jan 25 12:26 start_atlas.sh
[2026-01-25 16:17:30] -rw-r--r--. 2 boinc boinc    597760 Jan 25 12:26 input.tar.gz
[2026-01-25 16:17:30] -rw-------. 1 boinc boinc 181965021 Jan 25 16:15 HITS.pool.root.1
[2026-01-25 16:17:30] -rw-------. 1 boinc boinc   2416640 Jan 25 16:17 result.tar.gz
16:17:31 (4931): run_atlas exited; CPU time 52370.726218
16:17:31 (4931): called boinc_finish(0)

</stderr_txt>
]]>

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