Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:18:31 (15299): wrapper (7.7.26015): starting
12:18:31 (15299): wrapper: running run_atlas (--nthreads 8)
[2026-01-25 12:18:31] Arguments: --nthreads 8
[2026-01-25 12:18:31] Threads: 8
[2026-01-25 12:18:31] Checking for CVMFS
[2026-01-25 12:18:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-25 12:18:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-25 12:18:33] Running cvmfs_config stat atlas.cern.ch
[2026-01-25 12:18:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-25 12:18:35] 2.11.2.0 26228 58385 131972 155507 1 53 18045010 25165824 1060 130560 0 24214400 99.859 15645158 2995 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-25 12:18:35] CVMFS is ok
[2026-01-25 12:18:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-25 12:18:35] Checking for apptainer binary...
[2026-01-25 12:18:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-25 12:18:35] Running /usr/bin/apptainer --version
[2026-01-25 12:18:35] apptainer version 1.3.2-1.el7
[2026-01-25 12:18:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-25 12:18:49] cg-vwn495.simple-grid.lan
[2026-01-25 12:18:49] apptainer works
[2026-01-25 12:18:50] Set ATHENA_PROC_NUMBER=8
[2026-01-25 12:18:50] Set ATHENA_CORE_NUMBER=8
[2026-01-25 12:18:50] Starting ATLAS job with PandaID=6981242200
[2026-01-25 12:18:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-25 15:40:00]  *** The last 200 lines of the pilot log: ***
[2026-01-25 15:40:00] 2026-01-25 14:39:10,007 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6981242200/memory_monitor_summary.json (trf name=prmon)
[2026-01-25 15:40:00] 2026-01-25 14:39:10,008 | INFO     | extracted standard info from prmon json
[2026-01-25 15:40:00] 2026-01-25 14:39:10,008 | INFO     | extracted standard memory fields from prmon json
[2026-01-25 15:40:00] 2026-01-25 14:39:10,008 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-25 15:40:00] 2026-01-25 14:39:10,008 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-25 15:40:00] 2026-01-25 14:39:10,008 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-25 15:40:00] 2026-01-25 14:39:10,012 | INFO     | fitting pss+swap vs Time
[2026-01-25 15:40:00] 2026-01-25 14:39:10,012 | INFO     | sum of square deviations: 2126802667.5
[2026-01-25 15:40:00] 2026-01-25 14:39:10,014 | INFO     | sum of deviations: -20420454977.000008
[2026-01-25 15:40:00] 2026-01-25 14:39:10,014 | INFO     | mean x: 1769346133.5
[2026-01-25 15:40:00] 2026-01-25 14:39:10,014 | INFO     | mean y: 2522596.957894737
[2026-01-25 15:40:00] 2026-01-25 14:39:10,014 | INFO     | intersect: 16990865525.987907
[2026-01-25 15:40:00] 2026-01-25 14:39:10,014 | INFO     | chi2: 2.436387040921
[2026-01-25 15:40:00] 2026-01-25 14:39:10,015 | INFO     | sum of square deviations: 1963274020.0
[2026-01-25 15:40:00] 2026-01-25 14:39:10,016 | INFO     | sum of deviations: -7213728789.000006
[2026-01-25 15:40:00] 2026-01-25 14:39:10,016 | INFO     | mean x: 1769345981.0
[2026-01-25 15:40:00] 2026-01-25 14:39:10,016 | INFO     | mean y: 2534662.427027027
[2026-01-25 15:40:00] 2026-01-25 14:39:10,017 | INFO     | intersect: 6503706638.838734
[2026-01-25 15:40:00] 2026-01-25 14:39:10,017 | INFO     | chi2: 1.6726036405691747
[2026-01-25 15:40:00] 2026-01-25 14:39:10,017 | INFO     | current chi2=1.6726036405691747 (change=31.349017521579853 %)
[2026-01-25 15:40:00] 2026-01-25 14:39:10,017 | INFO     | sum of square deviations: 1808350185.0
[2026-01-25 15:40:00] 2026-01-25 14:39:10,019 | INFO     | sum of deviations: -6840189066.999998
[2026-01-25 15:40:00] 2026-01-25 14:39:10,019 | INFO     | mean x: 1769345828.5
[2026-01-25 15:40:00] 2026-01-25 14:39:10,019 | INFO     | mean y: 2535030.222222222
[2026-01-25 15:40:00] 2026-01-25 14:39:10,019 | INFO     | intersect: 6695187864.9649315
[2026-01-25 15:40:00] 2026-01-25 14:39:10,019 | INFO     | chi2: 1.6720744699596706
[2026-01-25 15:40:00] 2026-01-25 14:39:10,019 | INFO     | current chi2=1.6720744699596706 (change=0.03163753782838884 %)
[2026-01-25 15:40:00] 2026-01-25 14:39:10,020 | INFO     | right removable region: 179
[2026-01-25 15:40:00] 2026-01-25 14:39:10,020 | INFO     | sum of square deviations: 1963274020.0
[2026-01-25 15:40:00] 2026-01-25 14:39:10,021 | INFO     | sum of deviations: -49514557233.000015
[2026-01-25 15:40:00] 2026-01-25 14:39:10,021 | INFO     | mean x: 1769346286.0
[2026-01-25 15:40:00] 2026-01-25 14:39:10,021 | INFO     | mean y: 2549400.2162162163
[2026-01-25 15:40:00] 2026-01-25 14:39:10,021 | INFO     | intersect: 44626171498.1356
[2026-01-25 15:40:00] 2026-01-25 14:39:10,022 | INFO     | chi2: 0.9597150093522371
[2026-01-25 15:40:00] 2026-01-25 14:39:10,022 | INFO     | current chi2=0.9597150093522371 (change=60.60909070549616 %)
[2026-01-25 15:40:00] 2026-01-25 14:39:10,022 | INFO     | sum of square deviations: 1808350185.0
[2026-01-25 15:40:00] 2026-01-25 14:39:10,023 | INFO     | sum of deviations: -45251464781.50001
[2026-01-25 15:40:00] 2026-01-25 14:39:10,024 | INFO     | mean x: 1769346438.5
[2026-01-25 15:40:00] 2026-01-25 14:39:10,024 | INFO     | mean y: 2545188.1166666667
[2026-01-25 15:40:00] 2026-01-25 14:39:10,024 | INFO     | intersect: 44277995104.94526
[2026-01-25 15:40:00] 2026-01-25 14:39:10,024 | INFO     | chi2: 0.9579402279458362
[2026-01-25 15:40:00] 2026-01-25 14:39:10,024 | INFO     | current chi2=0.9579402279458362 (change=0.18492796185387944 %)
[2026-01-25 15:40:00] 2026-01-25 14:39:10,024 | INFO     | left removable region: 20
[2026-01-25 15:40:00] 2026-01-25 14:39:10,025 | INFO     | sum of square deviations: 1246386160.0
[2026-01-25 15:40:00] 2026-01-25 14:39:10,026 | INFO     | sum of deviations: -19891801649.000008
[2026-01-25 15:40:00] 2026-01-25 14:39:10,026 | INFO     | mean x: 1769346408.0
[2026-01-25 15:40:00] 2026-01-25 14:39:10,026 | INFO     | mean y: 2546426.603773585
[2026-01-25 15:40:00] 2026-01-25 14:39:10,026 | INFO     | intersect: 28240574836.92136
[2026-01-25 15:40:00] 2026-01-25 14:39:10,026 | INFO     | chi2: 0.13879389546657905
[2026-01-25 15:40:00] 2026-01-25 14:39:10,026 | INFO     | current memory leak: -15.96 B/s (using 159 data points, chi2=0.14)
[2026-01-25 15:40:00] 2026-01-25 14:39:10,027 | INFO     | could have reported an average CPU frequency of 2249 MHz (10 samples)
[2026-01-25 15:40:00] 2026-01-25 14:39:10,027 | INFO     | ..............................
[2026-01-25 15:40:00] 2026-01-25 14:39:10,027 | INFO     | . Timing measurements:
[2026-01-25 15:40:00] 2026-01-25 14:39:10,027 | INFO     | . get job = 0 s
[2026-01-25 15:40:00] 2026-01-25 14:39:10,027 | INFO     | . initial setup = 129 s
[2026-01-25 15:40:00] 2026-01-25 14:39:10,028 | INFO     | . payload setup = 16 s
[2026-01-25 15:40:00] 2026-01-25 14:39:10,028 | INFO     | . stage-in = 0 s
[2026-01-25 15:40:00] 2026-01-25 14:39:10,028 | INFO     | . payload execution = 11579 s
[2026-01-25 15:40:00] 2026-01-25 14:39:10,028 | INFO     | . stage-out = 4 s
[2026-01-25 15:40:00] 2026-01-25 14:39:10,028 | INFO     | . log creation = 1 s
[2026-01-25 15:40:00] 2026-01-25 14:39:10,028 | INFO     | ..............................
[2026-01-25 15:40:00] 2026-01-25 14:39:10,053 | INFO     | time since job start (11620s) is within the limit (349056.0s)
[2026-01-25 15:40:00] 2026-01-25 14:39:10,152 | INFO     | 
[2026-01-25 15:40:00] 2026-01-25 14:39:10,153 | INFO     | job summary report
[2026-01-25 15:40:00] 2026-01-25 14:39:10,153 | INFO     | --------------------------------------------------
[2026-01-25 15:40:00] 2026-01-25 14:39:10,153 | INFO     | PanDA job id: 6981242200
[2026-01-25 15:40:00] 2026-01-25 14:39:10,153 | INFO     | task id: 48310840
[2026-01-25 15:40:00] 2026-01-25 14:39:10,153 | INFO     | errors: (none)
[2026-01-25 15:40:00] 2026-01-25 14:39:10,153 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-25 15:40:00] 2026-01-25 14:39:10,153 | INFO     | pilot state: finished 
[2026-01-25 15:40:00] 2026-01-25 14:39:10,153 | INFO     | transexitcode: 0
[2026-01-25 15:40:00] 2026-01-25 14:39:10,154 | INFO     | exeerrorcode: 0
[2026-01-25 15:40:00] 2026-01-25 14:39:10,154 | INFO     | exeerrordiag: 
[2026-01-25 15:40:00] 2026-01-25 14:39:10,154 | INFO     | exitcode: 0
[2026-01-25 15:40:00] 2026-01-25 14:39:10,154 | INFO     | exitmsg: OK
[2026-01-25 15:40:00] 2026-01-25 14:39:10,154 | INFO     | cpuconsumptiontime: 54589 s
[2026-01-25 15:40:00] 2026-01-25 14:39:10,154 | INFO     | nevents: 400
[2026-01-25 15:40:00] 2026-01-25 14:39:10,154 | INFO     | neventsw: 0
[2026-01-25 15:40:00] 2026-01-25 14:39:10,154 | INFO     | pid: 23689
[2026-01-25 15:40:00] 2026-01-25 14:39:10,154 | INFO     | pgrp: 23689
[2026-01-25 15:40:00] 2026-01-25 14:39:10,154 | INFO     | corecount: 8
[2026-01-25 15:40:00] 2026-01-25 14:39:10,155 | INFO     | event service: False
[2026-01-25 15:40:00] 2026-01-25 14:39:10,155 | INFO     | sizes: {0: 2283777, 1: 2284238, 12: 2284238, 11600: 2313559, 11601: 2313558, 11606: 2322798, 11607: 2322936}
[2026-01-25 15:40:00] 2026-01-25 14:39:10,155 | INFO     | --------------------------------------------------
[2026-01-25 15:40:00] 2026-01-25 14:39:10,155 | INFO     | 
[2026-01-25 15:40:00] 2026-01-25 14:39:10,155 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2026-01-25 15:40:00] 2026-01-25 14:39:10,705 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-25 15:40:00] 2026-01-25 14:39:10,705 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-25 15:40:00] 2026-01-25 14:39:10,711 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-25 15:40:00] 2026-01-25 14:39:10,711 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-25 15:40:00] 2026-01-25 14:39:10,711 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-25 15:40:00] 2026-01-25 14:39:10,711 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-25 15:40:00] 2026-01-25 14:39:10,711 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-25 15:40:00] 2026-01-25 14:39:10,711 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-25 15:40:00] 2026-01-25 14:39:10,711 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-25 15:40:00] 2026-01-25 14:39:10,711 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-25 15:40:00] 2026-01-25 14:39:10,712 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-25 15:40:00] 2026-01-25 14:39:10,712 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-25 15:40:00] 2026-01-25 14:39:10,712 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-25 15:40:00] 2026-01-25 14:39:10,712 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-25 15:40:00] 2026-01-25 14:39:10,712 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-25 15:40:00] 2026-01-25 14:39:10,712 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-25 15:40:00] 2026-01-25 14:39:10,712 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-25 15:40:00] 2026-01-25 14:39:10,712 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-25 15:40:00] 2026-01-25 14:39:10,712 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-25 15:40:00] 2026-01-25 14:39:10,713 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-25 15:40:00] 2026-01-25 14:39:10,713 | INFO     | job 6981242200 has completed (purged errors)
[2026-01-25 15:40:00] 2026-01-25 14:39:10,713 | INFO     | overall cleanup function is called
[2026-01-25 15:40:00] 2026-01-25 14:39:11,721 | INFO     | --- collectZombieJob: --- 10, [23689]
[2026-01-25 15:40:00] 2026-01-25 14:39:11,722 | INFO     | zombie collector waiting for pid 23689
[2026-01-25 15:40:00] 2026-01-25 14:39:11,722 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-25 15:40:00] 2026-01-25 14:39:11,722 | INFO     | collected zombie processes
[2026-01-25 15:40:00] 2026-01-25 14:39:11,722 | INFO     | will attempt to kill all subprocesses of pid=23689
[2026-01-25 15:40:00] 2026-01-25 14:39:11,827 | INFO     | process IDs to be killed: [23689] (in reverse order)
[2026-01-25 15:40:00] 2026-01-25 14:39:12,980 | WARNING  | found no corresponding commands to process id(s)
[2026-01-25 15:40:00] 2026-01-25 14:39:12,980 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-25 15:40:00] 2026-01-25 14:39:12,982 | INFO     | did not find any defunct processes belonging to 23689
[2026-01-25 15:40:00] 2026-01-25 14:39:12,984 | INFO     | did not find any defunct processes belonging to 23689
[2026-01-25 15:40:00] 2026-01-25 14:39:12,984 | INFO     | ready for new job
[2026-01-25 15:40:00] 2026-01-25 14:39:12,984 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-25 15:40:00] 2026-01-25 14:39:12,986 | INFO     | **************************************
[2026-01-25 15:40:00] 2026-01-25 14:39:12,986 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-25 15:40:00] 2026-01-25 14:39:12,986 | INFO     | **************************************
[2026-01-25 15:40:00] 2026-01-25 14:39:12,986 | INFO     | 
[2026-01-25 15:40:00] 2026-01-25 14:39:12,987 | INFO     | pilot is running in a VM
[2026-01-25 15:40:00] 2026-01-25 14:39:12,987 | INFO     | architecture information:
[2026-01-25 15:40:00] 2026-01-25 14:39:12,992 | INFO     | executing command: cat /etc/os-release
[2026-01-25 15:40:00] 2026-01-25 14:39:13,288 | INFO     | cat /etc/os-release:
[2026-01-25 15:40:00] NAME="CentOS Linux"
[2026-01-25 15:40:00] VERSION="7 (Core)"
[2026-01-25 15:40:00] ID="centos"
[2026-01-25 15:40:00] ID_LIKE="rhel fedora"
[2026-01-25 15:40:00] VERSION_ID="7"
[2026-01-25 15:40:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-25 15:40:00] ANSI_COLOR="0;31"
[2026-01-25 15:40:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-25 15:40:00] HOME_URL="https://www.centos.org/"
[2026-01-25 15:40:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-25 15:40:00] 
[2026-01-25 15:40:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-25 15:40:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-25 15:40:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-25 15:40:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-25 15:40:00] 
[2026-01-25 15:40:00] 2026-01-25 14:39:13,288 | INFO     | **************************************
[2026-01-25 15:40:00] 2026-01-25 14:39:13,792 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2026-01-25 15:40:00] 2026-01-25 14:39:14,004 | INFO     | sufficient remaining disk space (496489201664 B)
[2026-01-25 15:40:00] 2026-01-25 14:39:14,004 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-25 15:40:00] 2026-01-25 14:39:14,005 | INFO     | current server update state: UPDATING_FINAL
[2026-01-25 15:40:00] 2026-01-25 14:39:14,005 | INFO     | update_server=False
[2026-01-25 15:40:00] 2026-01-25 14:39:14,005 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-25 15:40:00] 2026-01-25 14:39:14,093 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-25 15:40:00] 2026-01-25 14:39:14,452 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-25 15:40:00] 2026-01-25 14:39:14,453 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-25 15:40:00] 2026-01-25 14:39:14,453 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-25 15:40:00] 2026-01-25 14:39:14,453 | INFO     | will abort loop
[2026-01-25 15:40:00] 2026-01-25 14:39:14,775 | INFO     | all data control threads have been joined
[2026-01-25 15:40:00] 2026-01-25 14:39:14,880 | INFO     | all job control threads have been joined
[2026-01-25 15:40:00] 2026-01-25 14:39:15,011 | INFO     | [job] retrieve thread has finished
[2026-01-25 15:40:00] 2026-01-25 14:39:15,171 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-25 15:40:00] 2026-01-25 14:39:15,205 | INFO     | [data] copytool_in thread has finished
[2026-01-25 15:40:00] 2026-01-25 14:39:15,327 | INFO     | [payload] failed_post thread has finished
[2026-01-25 15:40:00] 2026-01-25 14:39:15,328 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-25 15:40:00] 2026-01-25 14:39:15,459 | INFO     | [job] job monitor thread has finished
[2026-01-25 15:40:00] 2026-01-25 14:39:15,499 | INFO     | all payload control threads have been joined
[2026-01-25 15:40:00] 2026-01-25 14:39:15,624 | INFO     | [payload] validate_pre thread has finished
[2026-01-25 15:40:00] 2026-01-25 14:39:15,782 | INFO     | [data] control thread has finished
[2026-01-25 15:40:00] 2026-01-25 14:39:15,887 | INFO     | [job] control thread has finished
[2026-01-25 15:40:00] 2026-01-25 14:39:15,926 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-25 15:40:00] 2026-01-25 14:39:16,016 | INFO     | [payload] validate_post thread has finished
[2026-01-25 15:40:00] 2026-01-25 14:39:16,069 | INFO     | [payload] execute_payloads thread has finished
[2026-01-25 15:40:00] 2026-01-25 14:39:16,101 | INFO     | [data] copytool_out thread has finished
[2026-01-25 15:40:00] 2026-01-25 14:39:16,177 | INFO     | [job] queue monitor thread has finished
[2026-01-25 15:40:00] 2026-01-25 14:39:16,253 | INFO     | [job] create_data_payload thread has finished
[2026-01-25 15:40:00] 2026-01-25 14:39:16,505 | INFO     | [payload] control thread has finished
[2026-01-25 15:40:00] 2026-01-25 14:39:16,510 | INFO     | [job] validate thread has finished
[2026-01-25 15:40:00] 2026-01-25 14:39:19,337 | INFO     | [data] queue_monitor thread has finished
[2026-01-25 15:40:00] 2026-01-25 14:39:43,184 | INFO     | PID=19267 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-25 15:40:00] 2026-01-25 14:39:43,184 | INFO     | .. there are 2 such processes running
[2026-01-25 15:40:00] 2026-01-25 14:39:43,185 | INFO     | found 0 job(s) in 20 queues
[2026-01-25 15:40:00] 2026-01-25 14:39:43,185 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-25 15:40:00] 2026-01-25 14:39:43,185 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-25 15:40:00] 2026-01-25 14:39:49,264 | INFO     | [monitor] cgroup control has ended
[2026-01-25 15:40:00] 2026-01-25 14:39:50,845 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139679605454656)>', '<ExcThread(monitor, started 139679047350016)>']
[2026-01-25 15:40:00] 2026-01-25 14:39:51,232 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-25 15:40:00] 2026-01-25 14:39:51,233 | INFO     | [monitor] control thread has ended
[2026-01-25 15:40:00] 2026-01-25 14:39:55,871 | INFO     | all workflow threads have been joined
[2026-01-25 15:40:00] 2026-01-25 14:39:55,872 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-25 15:40:00] 2026-01-25 14:39:55,872 | INFO     | traces error code: 0
[2026-01-25 15:40:00] 2026-01-25 14:39:55,872 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-25 15:40:00] 2026-01-25 14:39:56,201 [wrapper] ==== pilot stdout END ====
[2026-01-25 15:40:00] 2026-01-25 14:39:56,314 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-25 15:40:00] 2026-01-25 14:39:56,423 [wrapper] pilotpid: 19267
[2026-01-25 15:40:00] 2026-01-25 14:39:56,522 [wrapper] Pilot exit status: 0
[2026-01-25 15:40:00] 2026-01-25 14:39:56,964 [wrapper] pandaids: 6981242200
[2026-01-25 15:40:00] 2026-01-25 14:39:57,955 [wrapper] cleanup supervisor_pilot 12383 19268
[2026-01-25 15:40:00] 2026-01-25 14:39:58,020 [wrapper] Test setup, not cleaning
[2026-01-25 15:40:00] 2026-01-25 14:39:58,110 [wrapper] apfmon messages muted
[2026-01-25 15:40:00] 2026-01-25 14:39:58,221 [wrapper] ==== wrapper stdout END ====
[2026-01-25 15:40:00] 2026-01-25 14:39:58,308 [wrapper] ==== wrapper stderr END ====
[2026-01-25 15:40:00]  *** Error codes and diagnostics ***
[2026-01-25 15:40:00]     "exeErrorCode": 0,
[2026-01-25 15:40:00]     "exeErrorDiag": "",
[2026-01-25 15:40:00]     "pilotErrorCode": 0,
[2026-01-25 15:40:00]     "pilotErrorDiag": "",
[2026-01-25 15:40:00]  *** Listing of results directory ***
[2026-01-25 15:40:00] total 717380
[2026-01-25 15:40:00] -rw-r--r--. 1 boinc boinc    584422 Jan 24 17:59 pilot3.tar.gz
[2026-01-25 15:40:00] -rwx------. 1 boinc boinc     36322 Jan 24 18:03 runpilot2-wrapper.sh
[2026-01-25 15:40:00] -rw-r--r--. 1 boinc boinc      5111 Jan 24 18:05 queuedata.json
[2026-01-25 15:40:00] -rw-r--r--. 1 boinc boinc       100 Jan 25 12:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-25 15:40:00] -rwxr-xr-x. 1 boinc boinc      7986 Jan 25 12:18 run_atlas
[2026-01-25 15:40:00] -rw-r--r--. 1 boinc boinc       105 Jan 25 12:18 job.xml
[2026-01-25 15:40:00] -rw-r--r--. 1 boinc boinc      6391 Jan 25 12:18 init_data.xml
[2026-01-25 15:40:00] -rw-r--r--. 2 boinc boinc 527429841 Jan 25 12:18 EVNT.48310836._000032.pool.root.1
[2026-01-25 15:40:00] -rw-r--r--. 2 boinc boinc     15845 Jan 25 12:18 start_atlas.sh
[2026-01-25 15:40:00] drwxrwx--x. 2 boinc boinc        68 Jan 25 12:18 shared
[2026-01-25 15:40:00] -rw-r--r--. 2 boinc boinc    597758 Jan 25 12:18 input.tar.gz
[2026-01-25 15:40:00] -rw-r--r--. 1 boinc boinc         0 Jan 25 12:18 boinc_lockfile
[2026-01-25 15:40:00] -rw-r--r--. 1 boinc boinc      2500 Jan 25 12:18 pandaJob.out
[2026-01-25 15:40:00] -rw-------. 1 boinc boinc       415 Jan 25 12:25 workernode_map.json
[2026-01-25 15:40:00] -rw-------. 1 boinc boinc   1004254 Jan 25 12:25 agis_schedconf.cvmfs.json
[2026-01-25 15:40:00] drwx------. 5 boinc boinc      4096 Jan 25 12:25 pilot3
[2026-01-25 15:40:00] -rw-------. 1 boinc boinc 199103642 Jan 25 15:37 HITS.48310840._001464.pool.root.1
[2026-01-25 15:40:00] -rw-r--r--. 1 boinc boinc       531 Jan 25 15:37 boinc_task_state.xml
[2026-01-25 15:40:00] -rw-------. 1 boinc boinc      1022 Jan 25 15:38 memory_monitor_summary.json
[2026-01-25 15:40:00] -rw-------. 1 boinc boinc        95 Jan 25 15:39 pilot_heartbeat.json
[2026-01-25 15:40:00] -rw-------. 1 boinc boinc   1516246 Jan 25 15:39 agis_ddmendpoints.agis.ALL.json
[2026-01-25 15:40:00] -rw-------. 1 boinc boinc    425469 Jan 25 15:39 log.48310840._001464.job.log.tgz.1
[2026-01-25 15:40:00] -rw-------. 1 boinc boinc      6321 Jan 25 15:39 heartbeat.json
[2026-01-25 15:40:00] -rw-------. 1 boinc boinc      5067 Jan 25 15:39 pilotlog.txt
[2026-01-25 15:40:00] -rw-------. 1 boinc boinc   1642444 Jan 25 15:39 log.48310840._001464.job.log.1
[2026-01-25 15:40:00] -rw-------. 1 boinc boinc       357 Jan 25 15:39 output.list
[2026-01-25 15:40:00] -rw-r--r--. 1 boinc boinc       620 Jan 25 15:39 runtime_log
[2026-01-25 15:40:00] -rw-------. 1 boinc boinc   2088960 Jan 25 15:39 result.tar.gz
[2026-01-25 15:40:00] -rw-r--r--. 1 boinc boinc        28 Jan 25 15:39 wrapper_checkpoint.txt
[2026-01-25 15:40:00] -rw-r--r--. 1 boinc boinc      8832 Jan 25 15:39 runtime_log.err
[2026-01-25 15:40:00] -rw-------. 1 boinc boinc       654 Jan 25 15:39 pfjKDm4Dw38nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmoe5KDmHwSf2m.diag
[2026-01-25 15:40:00] -rw-r--r--. 1 boinc boinc      8192 Jan 25 15:40 boinc_mmap_file
[2026-01-25 15:40:00] -rw-r--r--. 1 boinc boinc     20743 Jan 25 15:40 stderr.txt
[2026-01-25 15:40:00] HITS file was successfully produced:
[2026-01-25 15:40:00] -rw-------. 1 boinc boinc 199103642 Jan 25 15:37 shared/HITS.pool.root.1
[2026-01-25 15:40:00]  *** Contents of shared directory: ***
[2026-01-25 15:40:00] total 712152
[2026-01-25 15:40:00] -rw-r--r--. 2 boinc boinc 527429841 Jan 25 12:18 ATLAS.root_0
[2026-01-25 15:40:00] -rw-r--r--. 2 boinc boinc     15845 Jan 25 12:18 start_atlas.sh
[2026-01-25 15:40:00] -rw-r--r--. 2 boinc boinc    597758 Jan 25 12:18 input.tar.gz
[2026-01-25 15:40:00] -rw-------. 1 boinc boinc 199103642 Jan 25 15:37 HITS.pool.root.1
[2026-01-25 15:40:00] -rw-------. 1 boinc boinc   2088960 Jan 25 15:39 result.tar.gz
15:40:01 (15299): run_atlas exited; CPU time 54693.920518
15:40:01 (15299): called boinc_finish(0)

</stderr_txt>
]]>

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