Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:21:19 (2955079): wrapper (7.7.26015): starting
13:21:19 (2955079): wrapper: running run_atlas (--nthreads 4)
[2026-01-25 13:21:19] Arguments: --nthreads 4
[2026-01-25 13:21:19] Threads: 4
[2026-01-25 13:21:19] Checking for CVMFS
[2026-01-25 13:21:19] No cvmfs_config command found, will try listing directly
[2026-01-25 13:21:19] CVMFS is ok
[2026-01-25 13:21:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-25 13:21:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-25 13:21:19] Further information can be found at the LHC@home message board.
[2026-01-25 13:21:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-25 13:21:19] Checking for apptainer binary...
[2026-01-25 13:21:19] which: no apptainer in ((null))
[2026-01-25 13:21:19] apptainer is not installed, using version from CVMFS
[2026-01-25 13:21:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-25 13:21:19] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut32.grid.cesnet.cz
[2026-01-25 13:21:19] apptainer works
[2026-01-25 13:21:19] Set ATHENA_PROC_NUMBER=4
[2026-01-25 13:21:19] Set ATHENA_CORE_NUMBER=4
[2026-01-25 13:21:20] Starting ATLAS job with PandaID=6981239467
[2026-01-25 13:21:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-25 16:48:09]  *** The last 200 lines of the pilot log: ***
[2026-01-25 16:48:09] 2026-01-25 15:36:56,377 | INFO     | preparing for final server update for job 6981239467 in state='finished'
[2026-01-25 16:48:09] 2026-01-25 15:36:57,069 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-25 16:48:09] 2026-01-25 15:36:57,069 | INFO     | reading metadata from: /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6981239467/jobReport.json
[2026-01-25 16:48:09] 2026-01-25 15:36:57,072 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot36/slots/0/workernode_map.json
[2026-01-25 16:48:09] 2026-01-25 15:36:57,072 | INFO     | this job has now completed (state=finished)
[2026-01-25 16:48:09] 2026-01-25 15:36:57,073 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-25 16:48:09] 2026-01-25 15:36:57,073 | INFO     | log transfer has been attempted: DONE
[2026-01-25 16:48:09] 2026-01-25 15:36:57,073 | INFO     | job 6981239467 has finished - writing final server update
[2026-01-25 16:48:09] 2026-01-25 15:36:57,073 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2247618/.job.ad'
[2026-01-25 16:48:09] 2026-01-25 15:36:57,073 | INFO     | total number of processed events: 400 (read)
[2026-01-25 16:48:09] 2026-01-25 15:36:57,082 | INFO     | using path: /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6981239467/memory_monitor_summary.json (trf name=prmon)
[2026-01-25 16:48:09] 2026-01-25 15:36:57,082 | INFO     | extracted standard info from prmon json
[2026-01-25 16:48:09] 2026-01-25 15:36:57,082 | INFO     | extracted standard memory fields from prmon json
[2026-01-25 16:48:09] 2026-01-25 15:36:57,082 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-25 16:48:09] 2026-01-25 15:36:57,083 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-25 16:48:09] 2026-01-25 15:36:57,083 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-25 16:48:09] 2026-01-25 15:36:57,087 | INFO     | fitting pss+swap vs Time
[2026-01-25 16:48:09] 2026-01-25 15:36:57,088 | INFO     | sum of square deviations: 2194675568.0
[2026-01-25 16:48:09] 2026-01-25 15:36:57,089 | INFO     | sum of deviations: -53771021088.99997
[2026-01-25 16:48:09] 2026-01-25 15:36:57,089 | INFO     | mean x: 1769349543.5
[2026-01-25 16:48:09] 2026-01-25 15:36:57,089 | INFO     | mean y: 2424183.1145833335
[2026-01-25 16:48:09] 2026-01-25 15:36:57,089 | INFO     | intersect: 43352672850.64382
[2026-01-25 16:48:09] 2026-01-25 15:36:57,090 | INFO     | chi2: 1.7492003077306157
[2026-01-25 16:48:09] 2026-01-25 15:36:57,090 | INFO     | sum of square deviations: 2027639878.0
[2026-01-25 16:48:09] 2026-01-25 15:36:57,091 | INFO     | sum of deviations: -51729757166.00009
[2026-01-25 16:48:09] 2026-01-25 15:36:57,091 | INFO     | mean x: 1769349391.0
[2026-01-25 16:48:09] 2026-01-25 15:36:57,092 | INFO     | mean y: 2426047.1497326205
[2026-01-25 16:48:09] 2026-01-25 15:36:57,092 | INFO     | intersect: 45142598782.616196
[2026-01-25 16:48:09] 2026-01-25 15:36:57,092 | INFO     | chi2: 1.7401067464120448
[2026-01-25 16:48:09] 2026-01-25 15:36:57,092 | INFO     | current chi2=1.7401067464120448 (change=0.5198696386218234 %)
[2026-01-25 16:48:09] 2026-01-25 15:36:57,092 | INFO     | right removable region: 186
[2026-01-25 16:48:09] 2026-01-25 15:36:57,093 | INFO     | sum of square deviations: 2027639878.0
[2026-01-25 16:48:09] 2026-01-25 15:36:57,094 | INFO     | sum of deviations: -76156148023.0
[2026-01-25 16:48:09] 2026-01-25 15:36:57,094 | INFO     | mean x: 1769349696.0
[2026-01-25 16:48:09] 2026-01-25 15:36:57,094 | INFO     | mean y: 2444280.139037433
[2026-01-25 16:48:09] 2026-01-25 15:36:57,095 | INFO     | intersect: 66457468574.65829
[2026-01-25 16:48:09] 2026-01-25 15:36:57,095 | INFO     | chi2: 0.39956266346746233
[2026-01-25 16:48:09] 2026-01-25 15:36:57,095 | INFO     | current chi2=0.39956266346746233 (change=77.1574094915494 %)
[2026-01-25 16:48:09] 2026-01-25 15:36:57,095 | INFO     | sum of square deviations: 1869302025.5
[2026-01-25 16:48:09] 2026-01-25 15:36:57,097 | INFO     | sum of deviations: -68672757174.5
[2026-01-25 16:48:09] 2026-01-25 15:36:57,097 | INFO     | mean x: 1769349848.5
[2026-01-25 16:48:09] 2026-01-25 15:36:57,097 | INFO     | mean y: 2437065.3791208793
[2026-01-25 16:48:09] 2026-01-25 15:36:57,097 | INFO     | intersect: 65003239956.11501
[2026-01-25 16:48:09] 2026-01-25 15:36:57,097 | INFO     | chi2: 0.3967079109532712
[2026-01-25 16:48:09] 2026-01-25 15:36:57,098 | INFO     | current chi2=0.3967079109532712 (change=0.7144692873496229 %)
[2026-01-25 16:48:09] 2026-01-25 15:36:57,098 | INFO     | left removable region: 20
[2026-01-25 16:48:09] 2026-01-25 15:36:57,098 | INFO     | sum of square deviations: 1418361477.5
[2026-01-25 16:48:09] 2026-01-25 15:36:57,099 | INFO     | sum of deviations: -50220094426.50001
[2026-01-25 16:48:09] 2026-01-25 15:36:57,099 | INFO     | mean x: 1769349970.5
[2026-01-25 16:48:09] 2026-01-25 15:36:57,099 | INFO     | mean y: 2422249.813253012
[2026-01-25 16:48:09] 2026-01-25 15:36:57,100 | INFO     | intersect: 62650008215.45438
[2026-01-25 16:48:09] 2026-01-25 15:36:57,100 | INFO     | chi2: 0.3647805455845943
[2026-01-25 16:48:09] 2026-01-25 15:36:57,100 | INFO     | current memory leak: -35.41 B/s (using 166 data points, chi2=0.36)
[2026-01-25 16:48:09] 2026-01-25 15:36:57,101 | INFO     | could have reported an average CPU frequency of 2556 MHz (10 samples)
[2026-01-25 16:48:09] 2026-01-25 15:36:57,101 | INFO     | ..............................
[2026-01-25 16:48:09] 2026-01-25 15:36:57,101 | INFO     | . Timing measurements:
[2026-01-25 16:48:09] 2026-01-25 15:36:57,101 | INFO     | . get job = 0 s
[2026-01-25 16:48:09] 2026-01-25 15:36:57,101 | INFO     | . initial setup = 6 s
[2026-01-25 16:48:09] 2026-01-25 15:36:57,101 | INFO     | . payload setup = 5 s
[2026-01-25 16:48:09] 2026-01-25 15:36:57,101 | INFO     | . stage-in = 0 s
[2026-01-25 16:48:09] 2026-01-25 15:36:57,102 | INFO     | . payload execution = 11695 s
[2026-01-25 16:48:09] 2026-01-25 15:36:57,102 | INFO     | . stage-out = 1 s
[2026-01-25 16:48:09] 2026-01-25 15:36:57,102 | INFO     | . log creation = 0 s
[2026-01-25 16:48:09] 2026-01-25 15:36:57,102 | INFO     | ..............................
[2026-01-25 16:48:09] 2026-01-25 15:36:57,205 | INFO     | 
[2026-01-25 16:48:09] 2026-01-25 15:36:57,205 | INFO     | job summary report
[2026-01-25 16:48:09] 2026-01-25 15:36:57,205 | INFO     | --------------------------------------------------
[2026-01-25 16:48:09] 2026-01-25 15:36:57,205 | INFO     | PanDA job id: 6981239467
[2026-01-25 16:48:09] 2026-01-25 15:36:57,205 | INFO     | task id: 48310826
[2026-01-25 16:48:09] 2026-01-25 15:36:57,206 | INFO     | errors: (none)
[2026-01-25 16:48:09] 2026-01-25 15:36:57,206 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-25 16:48:09] 2026-01-25 15:36:57,206 | INFO     | pilot state: finished 
[2026-01-25 16:48:09] 2026-01-25 15:36:57,206 | INFO     | transexitcode: 0
[2026-01-25 16:48:09] 2026-01-25 15:36:57,206 | INFO     | exeerrorcode: 0
[2026-01-25 16:48:09] 2026-01-25 15:36:57,206 | INFO     | exeerrordiag: 
[2026-01-25 16:48:09] 2026-01-25 15:36:57,206 | INFO     | exitcode: 0
[2026-01-25 16:48:09] 2026-01-25 15:36:57,206 | INFO     | exitmsg: OK
[2026-01-25 16:48:09] 2026-01-25 15:36:57,207 | INFO     | cpuconsumptiontime: 45194 s
[2026-01-25 16:48:09] 2026-01-25 15:36:57,207 | INFO     | nevents: 400
[2026-01-25 16:48:09] 2026-01-25 15:36:57,207 | INFO     | neventsw: 0
[2026-01-25 16:48:09] 2026-01-25 15:36:57,207 | INFO     | pid: 2963708
[2026-01-25 16:48:09] 2026-01-25 15:36:57,207 | INFO     | pgrp: 2963708
[2026-01-25 16:48:09] 2026-01-25 15:36:57,207 | INFO     | corecount: 4
[2026-01-25 16:48:09] 2026-01-25 15:36:57,207 | INFO     | event service: False
[2026-01-25 16:48:09] 2026-01-25 15:36:57,208 | INFO     | sizes: {0: 2284251, 11: 2284251, 11705: 2313690, 11706: 2322710, 11708: 2322766, 11709: 2322960}
[2026-01-25 16:48:09] 2026-01-25 15:36:57,208 | INFO     | --------------------------------------------------
[2026-01-25 16:48:09] 2026-01-25 15:36:57,208 | INFO     | 
[2026-01-25 16:48:09] 2026-01-25 15:36:57,208 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/0
[2026-01-25 16:48:09] 2026-01-25 15:36:57,227 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-25 16:48:09] 2026-01-25 15:36:57,228 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-25 16:48:09] 2026-01-25 15:36:57,228 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-25 16:48:09] 2026-01-25 15:36:57,228 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-25 16:48:09] 2026-01-25 15:36:57,228 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-25 16:48:09] 2026-01-25 15:36:57,228 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-25 16:48:09] 2026-01-25 15:36:57,228 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-25 16:48:09] 2026-01-25 15:36:57,228 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-25 16:48:09] 2026-01-25 15:36:57,228 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-25 16:48:09] 2026-01-25 15:36:57,229 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-25 16:48:09] 2026-01-25 15:36:57,229 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-25 16:48:09] 2026-01-25 15:36:57,229 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-25 16:48:09] 2026-01-25 15:36:57,229 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-25 16:48:09] 2026-01-25 15:36:57,229 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-25 16:48:09] 2026-01-25 15:36:57,229 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-25 16:48:09] 2026-01-25 15:36:57,229 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-25 16:48:09] 2026-01-25 15:36:57,229 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-25 16:48:09] 2026-01-25 15:36:57,230 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-25 16:48:09] 2026-01-25 15:36:57,230 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-25 16:48:09] 2026-01-25 15:36:57,230 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-25 16:48:09] 2026-01-25 15:36:57,230 | INFO     | job 6981239467 has completed (purged errors)
[2026-01-25 16:48:09] 2026-01-25 15:36:57,230 | INFO     | overall cleanup function is called
[2026-01-25 16:48:09] 2026-01-25 15:36:58,236 | INFO     | --- collectZombieJob: --- 10, [2963708]
[2026-01-25 16:48:09] 2026-01-25 15:36:58,237 | INFO     | zombie collector waiting for pid 2963708
[2026-01-25 16:48:09] 2026-01-25 15:36:58,237 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-25 16:48:09] 2026-01-25 15:36:58,237 | INFO     | collected zombie processes
[2026-01-25 16:48:09] 2026-01-25 15:36:58,237 | INFO     | will attempt to kill all subprocesses of pid=2963708
[2026-01-25 16:48:09] 2026-01-25 15:36:58,566 | INFO     | process IDs to be killed: [2963708] (in reverse order)
[2026-01-25 16:48:09] 2026-01-25 15:36:58,654 | WARNING  | found no corresponding commands to process id(s)
[2026-01-25 16:48:09] 2026-01-25 15:36:58,654 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-25 16:48:09] 2026-01-25 15:36:58,663 | INFO     | did not find any defunct processes belonging to 2963708
[2026-01-25 16:48:09] 2026-01-25 15:36:58,670 | INFO     | did not find any defunct processes belonging to 2963708
[2026-01-25 16:48:09] 2026-01-25 15:36:58,671 | INFO     | ready for new job
[2026-01-25 16:48:09] 2026-01-25 15:36:58,671 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-25 16:48:09] 2026-01-25 15:36:58,673 | INFO     | **************************************
[2026-01-25 16:48:09] 2026-01-25 15:36:58,673 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-25 16:48:09] 2026-01-25 15:36:58,673 | INFO     | **************************************
[2026-01-25 16:48:09] 2026-01-25 15:36:58,673 | INFO     | 
[2026-01-25 16:48:09] 2026-01-25 15:36:58,676 | INFO     | architecture information:
[2026-01-25 16:48:09] 2026-01-25 15:36:58,676 | INFO     | executing command: cat /etc/os-release
[2026-01-25 16:48:09] 2026-01-25 15:36:58,690 | INFO     | cat /etc/os-release:
[2026-01-25 16:48:09] NAME="CentOS Linux"
[2026-01-25 16:48:09] VERSION="7 (Core)"
[2026-01-25 16:48:09] ID="centos"
[2026-01-25 16:48:09] ID_LIKE="rhel fedora"
[2026-01-25 16:48:09] VERSION_ID="7"
[2026-01-25 16:48:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-25 16:48:09] ANSI_COLOR="0;31"
[2026-01-25 16:48:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-25 16:48:09] HOME_URL="https://www.centos.org/"
[2026-01-25 16:48:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-25 16:48:09] 
[2026-01-25 16:48:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-25 16:48:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-25 16:48:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-25 16:48:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-25 16:48:09] 
[2026-01-25 16:48:09] 2026-01-25 15:36:58,690 | INFO     | **************************************
[2026-01-25 16:48:09] 2026-01-25 15:36:59,193 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2026-01-25 16:48:09] 2026-01-25 15:36:59,208 | INFO     | sufficient remaining disk space (1652932214784 B)
[2026-01-25 16:48:09] 2026-01-25 15:36:59,208 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-25 16:48:09] 2026-01-25 15:36:59,208 | INFO     | current server update state: UPDATING_FINAL
[2026-01-25 16:48:09] 2026-01-25 15:36:59,209 | INFO     | update_server=False
[2026-01-25 16:48:09] 2026-01-25 15:36:59,209 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-25 16:48:09] 2026-01-25 15:36:59,209 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-25 16:48:09] 2026-01-25 15:36:59,209 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-25 16:48:09] 2026-01-25 15:36:59,209 | INFO     | aborting loop
[2026-01-25 16:48:09] 2026-01-25 15:36:59,263 | INFO     | all payload control threads have been joined
[2026-01-25 16:48:09] 2026-01-25 15:36:59,394 | INFO     | job.realtimelogging is not enabled
[2026-01-25 16:48:09] 2026-01-25 15:36:59,652 | INFO     | all data control threads have been joined
[2026-01-25 16:48:09] 2026-01-25 15:36:59,701 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-25 16:48:09] 2026-01-25 15:37:00,214 | INFO     | [job] retrieve thread has finished
[2026-01-25 16:48:09] 2026-01-25 15:37:00,215 | INFO     | [job] queue monitor thread has finished
[2026-01-25 16:48:09] 2026-01-25 15:37:00,215 | INFO     | [job] job monitor thread has finished
[2026-01-25 16:48:09] 2026-01-25 15:37:00,269 | INFO     | [payload] control thread has finished
[2026-01-25 16:48:09] 2026-01-25 15:37:00,324 | INFO     | [data] copytool_in thread has finished
[2026-01-25 16:48:09] 2026-01-25 15:37:00,399 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-25 16:48:09] 2026-01-25 15:37:00,422 | INFO     | [payload] validate_post thread has finished
[2026-01-25 16:48:09] 2026-01-25 15:37:00,657 | INFO     | [data] control thread has finished
[2026-01-25 16:48:09] 2026-01-25 15:37:00,818 | INFO     | [job] validate thread has finished
[2026-01-25 16:48:09] 2026-01-25 15:37:00,866 | INFO     | all job control threads have been joined
[2026-01-25 16:48:09] 2026-01-25 15:37:01,050 | INFO     | [payload] failed_post thread has finished
[2026-01-25 16:48:09] 2026-01-25 15:37:01,411 | INFO     | [job] create_data_payload thread has finished
[2026-01-25 16:48:09] 2026-01-25 15:37:01,412 | INFO     | [payload] execute_payloads thread has finished
[2026-01-25 16:48:09] 2026-01-25 15:37:01,412 | INFO     | [payload] validate_pre thread has finished
[2026-01-25 16:48:09] 2026-01-25 15:37:01,706 | INFO     | [data] copytool_out thread has finished
[2026-01-25 16:48:09] 2026-01-25 15:37:01,871 | INFO     | [job] control thread has finished
[2026-01-25 16:48:09] 2026-01-25 15:37:02,383 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-25 16:48:09] 2026-01-25 15:37:06,389 | INFO     | [data] queue_monitor thread has finished
[2026-01-25 16:48:09] 2026-01-25 15:37:29,202 | INFO     | PID=2959081 has CPU usage=8.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-25 16:48:09] 2026-01-25 15:37:29,203 | INFO     | .. there are 2 such processes running
[2026-01-25 16:48:09] 2026-01-25 15:37:29,204 | INFO     | found 0 job(s) in 20 queues
[2026-01-25 16:48:09] 2026-01-25 15:37:29,204 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-25 16:48:09] 2026-01-25 15:37:29,204 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-25 16:48:09] 2026-01-25 15:37:54,585 | INFO     | [monitor] cgroup control has ended
[2026-01-25 16:48:09] 2026-01-25 15:37:56,049 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22480752326464)>', '<ExcThread(monitor, started 22480508159744)>']
[2026-01-25 16:48:09] 2026-01-25 15:37:56,324 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-25 16:48:09] 2026-01-25 15:37:56,325 | INFO     | [monitor] control thread has ended
[2026-01-25 16:48:09] 2026-01-25 15:38:01,075 | INFO     | all workflow threads have been joined
[2026-01-25 16:48:09] 2026-01-25 15:38:01,075 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-25 16:48:09] 2026-01-25 15:38:01,075 | INFO     | traces error code: 0
[2026-01-25 16:48:09] 2026-01-25 15:38:01,076 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-25 16:48:09] 2026-01-25 15:38:01,197 [wrapper] ==== pilot stdout END ====
[2026-01-25 16:48:09] 2026-01-25 15:38:01,200 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-25 16:48:09] 2026-01-25 15:38:01,202 [wrapper] pilotpid: 2959081
[2026-01-25 16:48:09] 2026-01-25 15:38:01,204 [wrapper] Pilot exit status: 0
[2026-01-25 16:48:09] 2026-01-25 15:38:01,213 [wrapper] pandaids: 6981239467
[2026-01-25 16:48:09] 2026-01-25 15:38:01,272 [wrapper] cleanup supervisor_pilot 3053452 2959082
[2026-01-25 16:48:09] 2026-01-25 15:38:01,275 [wrapper] Test setup, not cleaning
[2026-01-25 16:48:09] 2026-01-25 15:38:01,277 [wrapper] apfmon messages muted
[2026-01-25 16:48:09] 2026-01-25 15:38:01,280 [wrapper] ==== wrapper stdout END ====
[2026-01-25 16:48:09] 2026-01-25 15:38:01,282 [wrapper] ==== wrapper stderr END ====
[2026-01-25 16:48:09]  *** Error codes and diagnostics ***
[2026-01-25 16:48:09]     "exeErrorCode": 0,
[2026-01-25 16:48:09]     "exeErrorDiag": "",
[2026-01-25 16:48:09]     "pilotErrorCode": 0,
[2026-01-25 16:48:09]     "pilotErrorDiag": "",
[2026-01-25 16:48:09]  *** Listing of results directory ***
[2026-01-25 16:48:09] total 668020
[2026-01-25 16:48:09] -rw-r--r-- 1 boinc boinc    584422 Jan 24 15:28 pilot3.tar.gz
[2026-01-25 16:48:09] -rwx------ 1 boinc boinc     36322 Jan 24 15:31 runpilot2-wrapper.sh
[2026-01-25 16:48:09] -rw-r--r-- 1 boinc boinc      5111 Jan 24 15:31 queuedata.json
[2026-01-25 16:48:09] -rw-r--r-- 1 boinc boinc       100 Jan 25 13:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-25 16:48:09] -rwxr-xr-x 1 boinc boinc      7986 Jan 25 13:21 run_atlas
[2026-01-25 16:48:09] -rw-r--r-- 1 boinc boinc       105 Jan 25 13:21 job.xml
[2026-01-25 16:48:09] -rw-r--r-- 1 boinc boinc      6425 Jan 25 13:21 init_data.xml
[2026-01-25 16:48:09] -rw-r--r-- 2 boinc boinc 493017858 Jan 25 13:21 EVNT.48310824._000032.pool.root.1
[2026-01-25 16:48:09] -rw-r--r-- 2 boinc boinc     15845 Jan 25 13:21 start_atlas.sh
[2026-01-25 16:48:09] drwxrwx--x 2 boinc boinc      4096 Jan 25 13:21 shared
[2026-01-25 16:48:09] -rw-r--r-- 2 boinc boinc    597753 Jan 25 13:21 input.tar.gz
[2026-01-25 16:48:09] -rw-r--r-- 1 boinc boinc         0 Jan 25 13:21 boinc_lockfile
[2026-01-25 16:48:09] -rw-r--r-- 1 boinc boinc      2523 Jan 25 13:21 pandaJob.out
[2026-01-25 16:48:09] -rw------- 1 boinc boinc   1004254 Jan 25 13:21 agis_schedconf.cvmfs.json
[2026-01-25 16:48:09] -rw------- 1 boinc boinc       454 Jan 25 13:21 workernode_map.json
[2026-01-25 16:48:09] drwx------ 5 boinc boinc      4096 Jan 25 13:21 pilot3
[2026-01-25 16:48:09] -rw------- 1 boinc boinc 183013841 Jan 25 16:36 HITS.48310826._004664.pool.root.1
[2026-01-25 16:48:09] -rw-r--r-- 1 boinc boinc       529 Jan 25 16:36 boinc_task_state.xml
[2026-01-25 16:48:09] -rw------- 1 boinc boinc      1038 Jan 25 16:36 memory_monitor_summary.json
[2026-01-25 16:48:09] -rw------- 1 boinc boinc   1516246 Jan 25 16:36 agis_ddmendpoints.agis.ALL.json
[2026-01-25 16:48:09] -rw------- 1 boinc boinc    371007 Jan 25 16:36 log.48310826._004664.job.log.tgz.1
[2026-01-25 16:48:09] -rw------- 1 boinc boinc      6414 Jan 25 16:36 heartbeat.json
[2026-01-25 16:48:09] -rw------- 1 boinc boinc        95 Jan 25 16:37 pilot_heartbeat.json
[2026-01-25 16:48:09] -rw------- 1 boinc boinc      4902 Jan 25 16:38 pilotlog.txt
[2026-01-25 16:48:09] -rw------- 1 boinc boinc   1665530 Jan 25 16:38 log.48310826._004664.job.log.1
[2026-01-25 16:48:09] -rw------- 1 boinc boinc       357 Jan 25 16:38 output.list
[2026-01-25 16:48:09] -rw-r--r-- 1 boinc boinc       620 Jan 25 16:38 runtime_log
[2026-01-25 16:48:09] -rw------- 1 boinc boinc   2058240 Jan 25 16:38 result.tar.gz
[2026-01-25 16:48:09] -rw-r--r-- 1 boinc boinc      9205 Jan 25 16:38 runtime_log.err
[2026-01-25 16:48:09] -rw------- 1 boinc boinc       668 Jan 25 16:38 7tNNDmQqt38nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmuO5KDmKavacn.diag
[2026-01-25 16:48:09] -rw-r--r-- 1 boinc boinc        26 Jan 25 16:47 wrapper_checkpoint.txt
[2026-01-25 16:48:09] -rw-r--r-- 1 boinc boinc      8192 Jan 25 16:48 boinc_mmap_file
[2026-01-25 16:48:09] -rw-r--r-- 1 boinc boinc     21122 Jan 25 16:48 stderr.txt
[2026-01-25 16:48:09] HITS file was successfully produced:
[2026-01-25 16:48:09] -rw------- 1 boinc boinc 183013841 Jan 25 16:36 shared/HITS.pool.root.1
[2026-01-25 16:48:09]  *** Contents of shared directory: ***
[2026-01-25 16:48:09] total 662812
[2026-01-25 16:48:09] -rw-r--r-- 2 boinc boinc 493017858 Jan 25 13:21 ATLAS.root_0
[2026-01-25 16:48:09] -rw-r--r-- 2 boinc boinc     15845 Jan 25 13:21 start_atlas.sh
[2026-01-25 16:48:09] -rw-r--r-- 2 boinc boinc    597753 Jan 25 13:21 input.tar.gz
[2026-01-25 16:48:09] -rw------- 1 boinc boinc 183013841 Jan 25 16:36 HITS.pool.root.1
[2026-01-25 16:48:09] -rw------- 1 boinc boinc   2058240 Jan 25 16:38 result.tar.gz
16:48:10 (2955079): run_atlas exited; CPU time 45696.545176
16:48:10 (2955079): called boinc_finish(0)

</stderr_txt>
]]>

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