Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:29:45 (4269): wrapper (7.7.26015): starting
09:29:45 (4269): wrapper: running run_atlas (--nthreads 8)
[2026-01-25 09:29:45] Arguments: --nthreads 8
[2026-01-25 09:29:45] Threads: 8
[2026-01-25 09:29:45] Checking for CVMFS
[2026-01-25 09:29:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-25 09:29:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-25 09:29:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-25 09:29:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-25 09:29:48] 2.11.2.0 1076 58219 132668 155502 2 53 20154636 25165824 1060 130560 0 21119291 99.786 17685296 3219 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-25 09:29:48] CVMFS is ok
[2026-01-25 09:29:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-25 09:29:48] Checking for apptainer binary...
[2026-01-25 09:29:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-25 09:29:48] Running /usr/bin/apptainer --version
[2026-01-25 09:29:48] apptainer version 1.3.2-1.el7
[2026-01-25 09:29:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-25 09:30:04] cg-vwn456.simple-grid.lan
[2026-01-25 09:30:04] apptainer works
[2026-01-25 09:30:04] Set ATHENA_PROC_NUMBER=8
[2026-01-25 09:30:04] Set ATHENA_CORE_NUMBER=8
[2026-01-25 09:30:04] Starting ATLAS job with PandaID=6981424108
[2026-01-25 09:30:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-25 13:13:23]  *** The last 200 lines of the pilot log: ***
[2026-01-25 13:13:23] 2026-01-25 12:12:37,546 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-25 13:13:23] 2026-01-25 12:12:37,546 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-25 13:13:23] 2026-01-25 12:12:37,546 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-25 13:13:23] 2026-01-25 12:12:37,550 | INFO     | fitting pss+swap vs Time
[2026-01-25 13:13:23] 2026-01-25 12:12:37,551 | INFO     | sum of square deviations: 2790348132.0
[2026-01-25 13:13:23] 2026-01-25 12:12:37,553 | INFO     | sum of deviations: 88909691181.00003
[2026-01-25 13:13:23] 2026-01-25 12:12:37,553 | INFO     | mean x: 1769336801.5
[2026-01-25 13:13:23] 2026-01-25 12:12:37,553 | INFO     | mean y: 2418483.096153846
[2026-01-25 13:13:23] 2026-01-25 12:12:37,554 | INFO     | intersect: -56374485463.935555
[2026-01-25 13:13:23] 2026-01-25 12:12:37,554 | INFO     | chi2: 8.364448771992658
[2026-01-25 13:13:23] 2026-01-25 12:12:37,554 | INFO     | sum of square deviations: 2593916542.0
[2026-01-25 13:13:23] 2026-01-25 12:12:37,556 | INFO     | sum of deviations: 101134606143.0
[2026-01-25 13:13:23] 2026-01-25 12:12:37,556 | INFO     | mean x: 1769336649.0
[2026-01-25 13:13:23] 2026-01-25 12:12:37,556 | INFO     | mean y: 2427752.4778325125
[2026-01-25 13:13:23] 2026-01-25 12:12:37,557 | INFO     | intersect: -68982507666.07677
[2026-01-25 13:13:23] 2026-01-25 12:12:37,557 | INFO     | chi2: 7.587987874456318
[2026-01-25 13:13:23] 2026-01-25 12:12:37,557 | INFO     | current chi2=7.587987874456318 (change=9.282869902153323 %)
[2026-01-25 13:13:23] 2026-01-25 12:12:37,557 | INFO     | right removable region: 202
[2026-01-25 13:13:23] 2026-01-25 12:12:37,558 | INFO     | sum of square deviations: 2593916542.0
[2026-01-25 13:13:23] 2026-01-25 12:12:37,559 | INFO     | sum of deviations: 17537875577.0
[2026-01-25 13:13:23] 2026-01-25 12:12:37,560 | INFO     | mean x: 1769336954.0
[2026-01-25 13:13:23] 2026-01-25 12:12:37,560 | INFO     | mean y: 2473846.3990147784
[2026-01-25 13:13:23] 2026-01-25 12:12:37,560 | INFO     | intersect: -11960290124.840647
[2026-01-25 13:13:23] 2026-01-25 12:12:37,560 | INFO     | chi2: 3.3342551925822805
[2026-01-25 13:13:23] 2026-01-25 12:12:37,561 | INFO     | current chi2=3.3342551925822805 (change=60.13777735423965 %)
[2026-01-25 13:13:23] 2026-01-25 12:12:37,561 | INFO     | sum of square deviations: 2406926989.5
[2026-01-25 13:13:23] 2026-01-25 12:12:37,563 | INFO     | sum of deviations: -30407998763.0
[2026-01-25 13:13:23] 2026-01-25 12:12:37,563 | INFO     | mean x: 1769337106.5
[2026-01-25 13:13:23] 2026-01-25 12:12:37,563 | INFO     | mean y: 2512810.484848485
[2026-01-25 13:13:23] 2026-01-25 12:12:37,564 | INFO     | intersect: 22355496835.545986
[2026-01-25 13:13:23] 2026-01-25 12:12:37,564 | INFO     | chi2: 1.0909956416583944
[2026-01-25 13:13:23] 2026-01-25 12:12:37,564 | INFO     | current chi2=1.0909956416583944 (change=67.27917994742775 %)
[2026-01-25 13:13:23] 2026-01-25 12:12:37,565 | INFO     | sum of square deviations: 2229146912.0
[2026-01-25 13:13:23] 2026-01-25 12:12:37,566 | INFO     | sum of deviations: -36359449794.000015
[2026-01-25 13:13:23] 2026-01-25 12:12:37,566 | INFO     | mean x: 1769337259.0
[2026-01-25 13:13:23] 2026-01-25 12:12:37,566 | INFO     | mean y: 2517871.994818653
[2026-01-25 13:13:23] 2026-01-25 12:12:37,567 | INFO     | intersect: 28862046551.306965
[2026-01-25 13:13:23] 2026-01-25 12:12:37,567 | INFO     | chi2: 1.0257652430980442
[2026-01-25 13:13:23] 2026-01-25 12:12:37,567 | INFO     | current chi2=1.0257652430980442 (change=5.978978840024983 %)
[2026-01-25 13:13:23] 2026-01-25 12:12:37,567 | INFO     | left removable region: 30
[2026-01-25 13:13:23] 2026-01-25 12:12:37,568 | INFO     | sum of square deviations: 1577789583.0
[2026-01-25 13:13:23] 2026-01-25 12:12:37,569 | INFO     | sum of deviations: -4159916319.4999995
[2026-01-25 13:13:23] 2026-01-25 12:12:37,569 | INFO     | mean x: 1769337533.5
[2026-01-25 13:13:23] 2026-01-25 12:12:37,569 | INFO     | mean y: 2512378.843023256
[2026-01-25 13:13:23] 2026-01-25 12:12:37,569 | INFO     | intersect: 4667453863.825896
[2026-01-25 13:13:23] 2026-01-25 12:12:37,570 | INFO     | chi2: 0.0533991665775781
[2026-01-25 13:13:23] 2026-01-25 12:12:37,570 | INFO     | current memory leak: -2.64 B/s (using 172 data points, chi2=0.05)
[2026-01-25 13:13:23] 2026-01-25 12:12:37,570 | INFO     | could have reported an average CPU frequency of 2250 MHz (11 samples)
[2026-01-25 13:13:23] 2026-01-25 12:12:37,571 | INFO     | ..............................
[2026-01-25 13:13:23] 2026-01-25 12:12:37,571 | INFO     | . Timing measurements:
[2026-01-25 13:13:23] 2026-01-25 12:12:37,571 | INFO     | . get job = 0 s
[2026-01-25 13:13:23] 2026-01-25 12:12:37,571 | INFO     | . initial setup = 119 s
[2026-01-25 13:13:23] 2026-01-25 12:12:37,571 | INFO     | . payload setup = 149 s
[2026-01-25 13:13:23] 2026-01-25 12:12:37,571 | INFO     | . stage-in = 0 s
[2026-01-25 13:13:23] 2026-01-25 12:12:37,571 | INFO     | . payload execution = 12770 s
[2026-01-25 13:13:23] 2026-01-25 12:12:37,572 | INFO     | . stage-out = 1 s
[2026-01-25 13:13:23] 2026-01-25 12:12:37,572 | INFO     | . log creation = 0 s
[2026-01-25 13:13:23] 2026-01-25 12:12:37,572 | INFO     | ..............................
[2026-01-25 13:13:23] 2026-01-25 12:12:37,684 | INFO     | 
[2026-01-25 13:13:23] 2026-01-25 12:12:37,684 | INFO     | job summary report
[2026-01-25 13:13:23] 2026-01-25 12:12:37,684 | INFO     | --------------------------------------------------
[2026-01-25 13:13:23] 2026-01-25 12:12:37,684 | INFO     | PanDA job id: 6981424108
[2026-01-25 13:13:23] 2026-01-25 12:12:37,684 | INFO     | task id: 48310783
[2026-01-25 13:13:23] 2026-01-25 12:12:37,685 | INFO     | errors: (none)
[2026-01-25 13:13:23] 2026-01-25 12:12:37,685 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-25 13:13:23] 2026-01-25 12:12:37,685 | INFO     | pilot state: finished 
[2026-01-25 13:13:23] 2026-01-25 12:12:37,685 | INFO     | transexitcode: 0
[2026-01-25 13:13:23] 2026-01-25 12:12:37,685 | INFO     | exeerrorcode: 0
[2026-01-25 13:13:23] 2026-01-25 12:12:37,685 | INFO     | exeerrordiag: 
[2026-01-25 13:13:23] 2026-01-25 12:12:37,685 | INFO     | exitcode: 0
[2026-01-25 13:13:23] 2026-01-25 12:12:37,685 | INFO     | exitmsg: OK
[2026-01-25 13:13:23] 2026-01-25 12:12:37,685 | INFO     | cpuconsumptiontime: 51392 s
[2026-01-25 13:13:23] 2026-01-25 12:12:37,685 | INFO     | nevents: 400
[2026-01-25 13:13:23] 2026-01-25 12:12:37,686 | INFO     | neventsw: 0
[2026-01-25 13:13:23] 2026-01-25 12:12:37,686 | INFO     | pid: 12705
[2026-01-25 13:13:23] 2026-01-25 12:12:37,686 | INFO     | pgrp: 12705
[2026-01-25 13:13:23] 2026-01-25 12:12:37,686 | INFO     | corecount: 8
[2026-01-25 13:13:23] 2026-01-25 12:12:37,686 | INFO     | event service: False
[2026-01-25 13:13:23] 2026-01-25 12:12:37,686 | INFO     | sizes: {0: 2283092, 1: 2283777, 2: 2284238, 13: 2284238, 12924: 2314358, 12927: 2323356, 12929: 2323540, 12930: 2323734}
[2026-01-25 13:13:23] 2026-01-25 12:12:37,686 | INFO     | --------------------------------------------------
[2026-01-25 13:13:23] 2026-01-25 12:12:37,686 | INFO     | 
[2026-01-25 13:13:23] 2026-01-25 12:12:37,686 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-01-25 13:13:23] 2026-01-25 12:12:37,720 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-25 13:13:23] 2026-01-25 12:12:37,721 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-25 13:13:23] 2026-01-25 12:12:37,721 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-25 13:13:23] 2026-01-25 12:12:37,721 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-25 13:13:23] 2026-01-25 12:12:37,721 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-25 13:13:23] 2026-01-25 12:12:37,721 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-25 13:13:23] 2026-01-25 12:12:37,721 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-25 13:13:23] 2026-01-25 12:12:37,722 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-25 13:13:23] 2026-01-25 12:12:37,722 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-25 13:13:23] 2026-01-25 12:12:37,722 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-25 13:13:23] 2026-01-25 12:12:37,722 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-25 13:13:23] 2026-01-25 12:12:37,722 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-25 13:13:23] 2026-01-25 12:12:37,722 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-25 13:13:23] 2026-01-25 12:12:37,723 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-25 13:13:23] 2026-01-25 12:12:37,723 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-25 13:13:23] 2026-01-25 12:12:37,723 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-25 13:13:23] 2026-01-25 12:12:37,723 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-25 13:13:23] 2026-01-25 12:12:37,723 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-25 13:13:23] 2026-01-25 12:12:37,723 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-25 13:13:23] 2026-01-25 12:12:37,723 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-25 13:13:23] 2026-01-25 12:12:37,723 | INFO     | job 6981424108 has completed (purged errors)
[2026-01-25 13:13:23] 2026-01-25 12:12:37,724 | INFO     | overall cleanup function is called
[2026-01-25 13:13:23] 2026-01-25 12:12:37,874 | WARNING  | process 12705 can no longer be monitored (due to stat problems) - aborting
[2026-01-25 13:13:23] 2026-01-25 12:12:37,925 | INFO     | using path: /var/lib/boinc/slots/9/memory_monitor_summary.json (trf name=prmon)
[2026-01-25 13:13:23] 2026-01-25 12:12:37,988 | INFO     | number of running child processes to parent process 12705: 1
[2026-01-25 13:13:23] 2026-01-25 12:12:37,989 | INFO     | maximum number of monitored processes: 8
[2026-01-25 13:13:23] 2026-01-25 12:12:37,989 | INFO     | aborting job monitoring since job object (job id=6981424108) has expired
[2026-01-25 13:13:23] 2026-01-25 12:12:38,732 | INFO     | --- collectZombieJob: --- 10, [12705]
[2026-01-25 13:13:23] 2026-01-25 12:12:38,732 | INFO     | zombie collector waiting for pid 12705
[2026-01-25 13:13:23] 2026-01-25 12:12:38,732 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-25 13:13:23] 2026-01-25 12:12:38,733 | INFO     | collected zombie processes
[2026-01-25 13:13:23] 2026-01-25 12:12:38,733 | INFO     | will attempt to kill all subprocesses of pid=12705
[2026-01-25 13:13:23] 2026-01-25 12:12:38,798 | INFO     | process IDs to be killed: [12705] (in reverse order)
[2026-01-25 13:13:23] 2026-01-25 12:12:38,884 | WARNING  | found no corresponding commands to process id(s)
[2026-01-25 13:13:23] 2026-01-25 12:12:38,884 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-25 13:13:23] 2026-01-25 12:12:38,886 | INFO     | did not find any defunct processes belonging to 12705
[2026-01-25 13:13:23] 2026-01-25 12:12:38,888 | INFO     | did not find any defunct processes belonging to 12705
[2026-01-25 13:13:23] 2026-01-25 12:12:38,888 | INFO     | ready for new job
[2026-01-25 13:13:23] 2026-01-25 12:12:38,888 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-25 13:13:23] 2026-01-25 12:12:38,890 | INFO     | **************************************
[2026-01-25 13:13:23] 2026-01-25 12:12:38,890 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-25 13:13:23] 2026-01-25 12:12:38,890 | INFO     | **************************************
[2026-01-25 13:13:23] 2026-01-25 12:12:38,890 | INFO     | 
[2026-01-25 13:13:23] 2026-01-25 12:12:38,891 | INFO     | pilot is running in a VM
[2026-01-25 13:13:23] 2026-01-25 12:12:38,891 | INFO     | architecture information:
[2026-01-25 13:13:23] 2026-01-25 12:12:38,891 | INFO     | executing command: cat /etc/os-release
[2026-01-25 13:13:23] 2026-01-25 12:12:38,917 | INFO     | cat /etc/os-release:
[2026-01-25 13:13:23] NAME="CentOS Linux"
[2026-01-25 13:13:23] VERSION="7 (Core)"
[2026-01-25 13:13:23] ID="centos"
[2026-01-25 13:13:23] ID_LIKE="rhel fedora"
[2026-01-25 13:13:23] VERSION_ID="7"
[2026-01-25 13:13:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-25 13:13:23] ANSI_COLOR="0;31"
[2026-01-25 13:13:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-25 13:13:23] HOME_URL="https://www.centos.org/"
[2026-01-25 13:13:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-25 13:13:23] 
[2026-01-25 13:13:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-25 13:13:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-25 13:13:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-25 13:13:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-25 13:13:23] 
[2026-01-25 13:13:23] 2026-01-25 12:12:38,918 | INFO     | **************************************
[2026-01-25 13:13:23] 2026-01-25 12:12:39,421 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-01-25 13:13:23] 2026-01-25 12:12:39,445 | INFO     | sufficient remaining disk space (496754491392 B)
[2026-01-25 13:13:23] 2026-01-25 12:12:39,446 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-25 13:13:23] 2026-01-25 12:12:39,446 | INFO     | current server update state: UPDATING_FINAL
[2026-01-25 13:13:23] 2026-01-25 12:12:39,446 | INFO     | update_server=False
[2026-01-25 13:13:23] 2026-01-25 12:12:39,446 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-25 13:13:23] 2026-01-25 12:12:39,447 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-25 13:13:23] 2026-01-25 12:12:39,447 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-25 13:13:23] 2026-01-25 12:12:39,448 | INFO     | aborting loop
[2026-01-25 13:13:23] 2026-01-25 12:12:39,777 | INFO     | all data control threads have been joined
[2026-01-25 13:13:23] 2026-01-25 12:12:40,201 | INFO     | all payload control threads have been joined
[2026-01-25 13:13:23] 2026-01-25 12:12:40,452 | INFO     | [job] retrieve thread has finished
[2026-01-25 13:13:23] 2026-01-25 12:12:40,453 | INFO     | [job] queue monitor thread has finished
[2026-01-25 13:13:23] 2026-01-25 12:12:40,453 | INFO     | [job] job monitor thread has finished
[2026-01-25 13:13:23] 2026-01-25 12:12:40,684 | INFO     | all job control threads have been joined
[2026-01-25 13:13:23] 2026-01-25 12:12:40,698 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-25 13:13:23] 2026-01-25 12:12:40,782 | INFO     | [data] control thread has finished
[2026-01-25 13:13:23] 2026-01-25 12:12:41,207 | INFO     | [payload] control thread has finished
[2026-01-25 13:13:23] 2026-01-25 12:12:41,243 | INFO     | [payload] validate_post thread has finished
[2026-01-25 13:13:23] 2026-01-25 12:12:41,676 | INFO     | [payload] validate_pre thread has finished
[2026-01-25 13:13:23] 2026-01-25 12:12:41,690 | INFO     | [job] control thread has finished
[2026-01-25 13:13:23] 2026-01-25 12:12:41,695 | INFO     | [data] copytool_in thread has finished
[2026-01-25 13:13:23] 2026-01-25 12:12:41,733 | INFO     | [job] validate thread has finished
[2026-01-25 13:13:23] 2026-01-25 12:12:41,737 | INFO     | [payload] execute_payloads thread has finished
[2026-01-25 13:13:23] 2026-01-25 12:12:41,859 | INFO     | [job] create_data_payload thread has finished
[2026-01-25 13:13:23] 2026-01-25 12:12:41,961 | INFO     | [payload] failed_post thread has finished
[2026-01-25 13:13:23] 2026-01-25 12:12:42,703 | INFO     | [data] copytool_out thread has finished
[2026-01-25 13:13:23] 2026-01-25 12:12:42,901 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-25 13:13:23] 2026-01-25 12:12:46,906 | INFO     | [data] queue_monitor thread has finished
[2026-01-25 13:13:23] 2026-01-25 12:12:49,869 | INFO     | job.realtimelogging is not enabled
[2026-01-25 13:13:23] 2026-01-25 12:12:50,874 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-25 13:13:23] 2026-01-25 12:13:10,253 | INFO     | PID=8269 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-25 13:13:23] 2026-01-25 12:13:10,253 | INFO     | .. there are 2 such processes running
[2026-01-25 13:13:23] 2026-01-25 12:13:10,254 | INFO     | found 0 job(s) in 20 queues
[2026-01-25 13:13:23] 2026-01-25 12:13:10,254 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-25 13:13:23] 2026-01-25 12:13:10,254 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-25 13:13:23] 2026-01-25 12:13:16,962 | INFO     | [monitor] cgroup control has ended
[2026-01-25 13:13:23] 2026-01-25 12:13:18,341 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140125011867456)>', '<ExcThread(monitor, started 140124423702272)>']
[2026-01-25 13:13:23] 2026-01-25 12:13:19,301 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-25 13:13:23] 2026-01-25 12:13:19,301 | INFO     | [monitor] control thread has ended
[2026-01-25 13:13:23] 2026-01-25 12:13:23,348 | INFO     | all workflow threads have been joined
[2026-01-25 13:13:23] 2026-01-25 12:13:23,349 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-25 13:13:23] 2026-01-25 12:13:23,349 | INFO     | traces error code: 0
[2026-01-25 13:13:23] 2026-01-25 12:13:23,349 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-25 13:13:23] 2026-01-25 12:13:23,476 [wrapper] ==== pilot stdout END ====
[2026-01-25 13:13:23] 2026-01-25 12:13:23,482 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-25 13:13:23] 2026-01-25 12:13:23,486 [wrapper] pilotpid: 8269
[2026-01-25 13:13:23] 2026-01-25 12:13:23,491 [wrapper] Pilot exit status: 0
[2026-01-25 13:13:23] 2026-01-25 12:13:23,523 [wrapper] pandaids: 6981424108
[2026-01-25 13:13:23] 2026-01-25 12:13:23,588 [wrapper] cleanup supervisor_pilot 18674 8270
[2026-01-25 13:13:23] 2026-01-25 12:13:23,595 [wrapper] Test setup, not cleaning
[2026-01-25 13:13:23] 2026-01-25 12:13:23,608 [wrapper] apfmon messages muted
[2026-01-25 13:13:23] 2026-01-25 12:13:23,612 [wrapper] ==== wrapper stdout END ====
[2026-01-25 13:13:23] 2026-01-25 12:13:23,616 [wrapper] ==== wrapper stderr END ====
[2026-01-25 13:13:23]  *** Error codes and diagnostics ***
[2026-01-25 13:13:23]     "exeErrorCode": 0,
[2026-01-25 13:13:23]     "exeErrorDiag": "",
[2026-01-25 13:13:23]     "pilotErrorCode": 0,
[2026-01-25 13:13:23]     "pilotErrorDiag": "",
[2026-01-25 13:13:23]  *** Listing of results directory ***
[2026-01-25 13:13:23] total 722732
[2026-01-25 13:13:23] -rwx------. 1 boinc boinc     36322 Jan 24 20:30 runpilot2-wrapper.sh
[2026-01-25 13:13:23] -rw-r--r--. 1 boinc boinc    584422 Jan 24 20:31 pilot3.tar.gz
[2026-01-25 13:13:23] -rw-r--r--. 1 boinc boinc      5111 Jan 24 20:32 queuedata.json
[2026-01-25 13:13:23] -rw-r--r--. 1 boinc boinc       100 Jan 25 09:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-25 13:13:23] -rwxr-xr-x. 1 boinc boinc      7986 Jan 25 09:29 run_atlas
[2026-01-25 13:13:23] -rw-r--r--. 1 boinc boinc       105 Jan 25 09:29 job.xml
[2026-01-25 13:13:23] -rw-r--r--. 1 boinc boinc      6391 Jan 25 09:29 init_data.xml
[2026-01-25 13:13:23] -rw-r--r--. 2 boinc boinc 537333380 Jan 25 09:29 EVNT.48310779._000025.pool.root.1
[2026-01-25 13:13:23] -rw-r--r--. 2 boinc boinc     15845 Jan 25 09:29 start_atlas.sh
[2026-01-25 13:13:23] drwxrwx--x. 2 boinc boinc        68 Jan 25 09:29 shared
[2026-01-25 13:13:23] -rw-r--r--. 2 boinc boinc    597760 Jan 25 09:29 input.tar.gz
[2026-01-25 13:13:23] -rw-r--r--. 1 boinc boinc         0 Jan 25 09:29 boinc_lockfile
[2026-01-25 13:13:23] -rw-r--r--. 1 boinc boinc      2522 Jan 25 09:30 pandaJob.out
[2026-01-25 13:13:23] -rw-------. 1 boinc boinc       413 Jan 25 09:36 workernode_map.json
[2026-01-25 13:13:23] -rw-------. 1 boinc boinc   1004246 Jan 25 09:36 agis_schedconf.cvmfs.json
[2026-01-25 13:13:23] drwx------. 5 boinc boinc      4096 Jan 25 09:36 pilot3
[2026-01-25 13:13:23] -rw-------. 1 boinc boinc 194223370 Jan 25 13:11 HITS.48310783._002241.pool.root.1
[2026-01-25 13:13:23] -rw-r--r--. 1 boinc boinc       532 Jan 25 13:11 boinc_task_state.xml
[2026-01-25 13:13:23] -rw-------. 1 boinc boinc      1022 Jan 25 13:12 memory_monitor_summary.json
[2026-01-25 13:13:23] -rw-------. 1 boinc boinc   1516246 Jan 25 13:12 agis_ddmendpoints.agis.ALL.json
[2026-01-25 13:13:23] -rw-------. 1 boinc boinc    473104 Jan 25 13:12 log.48310783._002241.job.log.tgz.1
[2026-01-25 13:13:23] -rw-------. 1 boinc boinc      6320 Jan 25 13:12 heartbeat.json
[2026-01-25 13:13:23] -rw-r--r--. 1 boinc boinc      8192 Jan 25 13:13 boinc_mmap_file
[2026-01-25 13:13:23] -rw-r--r--. 1 boinc boinc        28 Jan 25 13:13 wrapper_checkpoint.txt
[2026-01-25 13:13:23] -rw-------. 1 boinc boinc        95 Jan 25 13:13 pilot_heartbeat.json
[2026-01-25 13:13:23] -rw-------. 1 boinc boinc      4951 Jan 25 13:13 pilotlog.txt
[2026-01-25 13:13:23] -rw-------. 1 boinc boinc   1826826 Jan 25 13:13 log.48310783._002241.job.log.1
[2026-01-25 13:13:23] -rw-------. 1 boinc boinc       357 Jan 25 13:13 output.list
[2026-01-25 13:13:23] -rw-r--r--. 1 boinc boinc       620 Jan 25 13:13 runtime_log
[2026-01-25 13:13:23] -rw-------. 1 boinc boinc   2314240 Jan 25 13:13 result.tar.gz
[2026-01-25 13:13:23] -rw-r--r--. 1 boinc boinc      8816 Jan 25 13:13 runtime_log.err
[2026-01-25 13:13:23] -rw-------. 1 boinc boinc       654 Jan 25 13:13 eTzNDmcWy38n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMBzKDmlbFNnm.diag
[2026-01-25 13:13:23] -rw-r--r--. 1 boinc boinc     20731 Jan 25 13:13 stderr.txt
[2026-01-25 13:13:23] HITS file was successfully produced:
[2026-01-25 13:13:23] -rw-------. 1 boinc boinc 194223370 Jan 25 13:11 shared/HITS.pool.root.1
[2026-01-25 13:13:23]  *** Contents of shared directory: ***
[2026-01-25 13:13:23] total 717272
[2026-01-25 13:13:23] -rw-r--r--. 2 boinc boinc 537333380 Jan 25 09:29 ATLAS.root_0
[2026-01-25 13:13:23] -rw-r--r--. 2 boinc boinc     15845 Jan 25 09:29 start_atlas.sh
[2026-01-25 13:13:23] -rw-r--r--. 2 boinc boinc    597760 Jan 25 09:29 input.tar.gz
[2026-01-25 13:13:23] -rw-------. 1 boinc boinc 194223370 Jan 25 13:11 HITS.pool.root.1
[2026-01-25 13:13:23] -rw-------. 1 boinc boinc   2314240 Jan 25 13:13 result.tar.gz
13:13:24 (4269): run_atlas exited; CPU time 51523.394790
13:13:24 (4269): called boinc_finish(0)

</stderr_txt>
]]>

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