Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:32:03 (5669): wrapper (7.7.26015): starting
18:32:03 (5669): wrapper: running run_atlas (--nthreads 12)
[2026-01-24 18:32:03] Arguments: --nthreads 12
[2026-01-24 18:32:03] Threads: 12
[2026-01-24 18:32:03] Checking for CVMFS
[2026-01-24 18:32:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-24 18:32:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-24 18:32:03] Running cvmfs_config stat atlas.cern.ch
[2026-01-24 18:32:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-24 18:32:03] 2.11.2.0 2984 373259 94288 155489 2 51 18283744 20275201 1 130560 1 158505582 99.959 21808971 16602 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-24 18:32:03] CVMFS is ok
[2026-01-24 18:32:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-24 18:32:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-24 18:32:03] Further information can be found at the LHC@home message board.
[2026-01-24 18:32:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-24 18:32:03] Checking for apptainer binary...
[2026-01-24 18:32:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-24 18:32:03] Running /usr/bin/apptainer --version
[2026-01-24 18:32:03] apptainer version 1.3.2-1.el7
[2026-01-24 18:32:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-24 18:32:05] c-205-26.aglt2.org
[2026-01-24 18:32:05] apptainer works
[2026-01-24 18:32:05] Set ATHENA_PROC_NUMBER=12
[2026-01-24 18:32:05] Set ATHENA_CORE_NUMBER=12
[2026-01-24 18:32:05] Starting ATLAS job with PandaID=6980376543
[2026-01-24 18:32:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-24 19:39:55]  *** The last 200 lines of the pilot log: ***
[2026-01-24 19:39:55]  filetype=log
[2026-01-24 19:39:55]  guid=b916a365-45b7-45a5-aa59-95fc719c28e0
[2026-01-24 19:39:55]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-24 19:39:55]  is_altstaged=None
[2026-01-24 19:39:55]  is_tar=False
[2026-01-24 19:39:55]  lfn=log.48310724._001811.job.log.tgz.1
[2026-01-24 19:39:55]  mtime=0
[2026-01-24 19:39:55]  protocol_id=None
[2026-01-24 19:39:55]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-24 19:39:55]  replicas=None
[2026-01-24 19:39:55]  scope=mc23_13p6TeV
[2026-01-24 19:39:55]  status=None
[2026-01-24 19:39:55]  status_code=0
[2026-01-24 19:39:55]  storage_token=
[2026-01-24 19:39:55]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6980376543/log.48310724._001811.job.log.tgz.1
[2026-01-24 19:39:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2d/38/log.48310724._001811.job.log.tgz.1
[2026-01-24 19:39:55]  workdir=None
[2026-01-24 19:39:55] ]
[2026-01-24 19:39:55] 2026-01-25 00:39:21,740 | INFO     | transferring file log.48310724._001811.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6980376543/log.48310724._001811.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-24 19:39:55] 2026-01-25 00:39:21,740 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6980376543/log.48310724._001811.job.log.tgz.1 /tmp/boinchome/slots/0/log.48310724._001811.job
[2026-01-24 19:39:55] 2026-01-25 00:39:21,760 | INFO     | adding to output.list: log.48310724._001811.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2d/38/log.48310724._001811.job.log.tg
[2026-01-24 19:39:55] 2026-01-25 00:39:21,761 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-24 19:39:55] 2026-01-25 00:39:21,761 | INFO     | summary of transferred files:
[2026-01-24 19:39:55] 2026-01-25 00:39:21,762 | INFO     |  -- lfn=log.48310724._001811.job.log.tgz.1, status_code=0, status=transferred
[2026-01-24 19:39:55] 2026-01-25 00:39:21,762 | INFO     | stage-out finished correctly
[2026-01-24 19:39:55] 2026-01-25 00:39:21,842 | INFO     | time since job start (4015s) is within the limit (349056.0s)
[2026-01-24 19:39:55] 2026-01-25 00:39:21,843 | INFO     | 4023s have passed since pilot start - server update state is 'RUNNING'
[2026-01-24 19:39:55] 2026-01-25 00:39:22,058 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-24 19:39:55] 2026-01-25 00:39:22,649 | INFO     | monitor loop #305: job 0:6980376543 is in state 'finished'
[2026-01-24 19:39:55] 2026-01-25 00:39:22,649 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-24 19:39:55] 2026-01-25 00:39:23,558 | INFO     | job 6980376543 has state=finished
[2026-01-24 19:39:55] 2026-01-25 00:39:23,559 | INFO     | preparing for final server update for job 6980376543 in state='finished'
[2026-01-24 19:39:55] 2026-01-25 00:39:23,634 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-24 19:39:55] 2026-01-25 00:39:23,634 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6980376543/jobReport.json
[2026-01-24 19:39:55] 2026-01-25 00:39:23,636 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-01-24 19:39:55] 2026-01-25 00:39:23,636 | INFO     | this job has now completed (state=finished)
[2026-01-24 19:39:55] 2026-01-25 00:39:23,636 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-24 19:39:55] 2026-01-25 00:39:23,636 | INFO     | log transfer has been attempted: DONE
[2026-01-24 19:39:55] 2026-01-25 00:39:23,636 | INFO     | job 6980376543 has finished - writing final server update
[2026-01-24 19:39:55] 2026-01-25 00:39:23,637 | INFO     | total number of processed events: 400 (read)
[2026-01-24 19:39:55] 2026-01-25 00:39:23,639 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6980376543/memory_monitor_summary.json (trf name=prmon)
[2026-01-24 19:39:55] 2026-01-25 00:39:23,639 | INFO     | extracted standard info from prmon json
[2026-01-24 19:39:55] 2026-01-25 00:39:23,639 | INFO     | extracted standard memory fields from prmon json
[2026-01-24 19:39:55] 2026-01-25 00:39:23,639 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-24 19:39:55] 2026-01-25 00:39:23,639 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-24 19:39:55] 2026-01-25 00:39:23,640 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-24 19:39:55] 2026-01-25 00:39:23,641 | INFO     | fitting pss+swap vs Time
[2026-01-24 19:39:55] 2026-01-25 00:39:23,641 | INFO     | sum of square deviations: 63666310.0
[2026-01-24 19:39:55] 2026-01-25 00:39:23,641 | INFO     | sum of deviations: -6661423870.000001
[2026-01-24 19:39:55] 2026-01-25 00:39:23,641 | INFO     | mean x: 1769299644.0
[2026-01-24 19:39:55] 2026-01-25 00:39:23,642 | INFO     | mean y: 2851964.186440678
[2026-01-24 19:39:55] 2026-01-25 00:39:23,642 | INFO     | intersect: 185125169901.63412
[2026-01-24 19:39:55] 2026-01-25 00:39:23,642 | INFO     | chi2: 0.053468880473262856
[2026-01-24 19:39:55] 2026-01-25 00:39:23,642 | INFO     | current memory leak: -104.63 B/s (using 59 data points, chi2=0.05)
[2026-01-24 19:39:55] 2026-01-25 00:39:23,642 | INFO     | could have reported an average CPU frequency of 1662 MHz (6 samples)
[2026-01-24 19:39:55] 2026-01-25 00:39:23,643 | INFO     | ..............................
[2026-01-24 19:39:55] 2026-01-25 00:39:23,643 | INFO     | . Timing measurements:
[2026-01-24 19:39:55] 2026-01-25 00:39:23,643 | INFO     | . get job = 0 s
[2026-01-24 19:39:55] 2026-01-25 00:39:23,643 | INFO     | . initial setup = 7 s
[2026-01-24 19:39:55] 2026-01-25 00:39:23,643 | INFO     | . payload setup = 7 s
[2026-01-24 19:39:55] 2026-01-25 00:39:23,643 | INFO     | . stage-in = 0 s
[2026-01-24 19:39:55] 2026-01-25 00:39:23,643 | INFO     | . payload execution = 3993 s
[2026-01-24 19:39:55] 2026-01-25 00:39:23,643 | INFO     | . stage-out = 0 s
[2026-01-24 19:39:55] 2026-01-25 00:39:23,643 | INFO     | . log creation = 0 s
[2026-01-24 19:39:55] 2026-01-25 00:39:23,643 | INFO     | ..............................
[2026-01-24 19:39:55] 2026-01-25 00:39:23,795 | INFO     | 
[2026-01-24 19:39:55] 2026-01-25 00:39:23,796 | INFO     | job summary report
[2026-01-24 19:39:55] 2026-01-25 00:39:23,796 | INFO     | --------------------------------------------------
[2026-01-24 19:39:55] 2026-01-25 00:39:23,796 | INFO     | PanDA job id: 6980376543
[2026-01-24 19:39:55] 2026-01-25 00:39:23,796 | INFO     | task id: 48310724
[2026-01-24 19:39:55] 2026-01-25 00:39:23,796 | INFO     | errors: (none)
[2026-01-24 19:39:55] 2026-01-25 00:39:23,797 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-24 19:39:55] 2026-01-25 00:39:23,797 | INFO     | pilot state: finished 
[2026-01-24 19:39:55] 2026-01-25 00:39:23,797 | INFO     | transexitcode: 0
[2026-01-24 19:39:55] 2026-01-25 00:39:23,797 | INFO     | exeerrorcode: 0
[2026-01-24 19:39:55] 2026-01-25 00:39:23,797 | INFO     | exeerrordiag: 
[2026-01-24 19:39:55] 2026-01-25 00:39:23,797 | INFO     | exitcode: 0
[2026-01-24 19:39:55] 2026-01-25 00:39:23,798 | INFO     | exitmsg: OK
[2026-01-24 19:39:55] 2026-01-25 00:39:23,798 | INFO     | cpuconsumptiontime: 44104 s
[2026-01-24 19:39:55] 2026-01-25 00:39:23,798 | INFO     | nevents: 400
[2026-01-24 19:39:55] 2026-01-25 00:39:23,798 | INFO     | neventsw: 0
[2026-01-24 19:39:55] 2026-01-25 00:39:23,798 | INFO     | pid: 14029
[2026-01-24 19:39:55] 2026-01-25 00:39:23,798 | INFO     | pgrp: 14029
[2026-01-24 19:39:55] 2026-01-25 00:39:23,798 | INFO     | corecount: 12
[2026-01-24 19:39:55] 2026-01-25 00:39:23,799 | INFO     | event service: False
[2026-01-24 19:39:55] 2026-01-25 00:39:23,799 | INFO     | sizes: {0: 2283758, 1: 2284275, 12: 2284275, 4003: 2310033, 4004: 2319087, 4006: 2319225}
[2026-01-24 19:39:55] 2026-01-25 00:39:23,799 | INFO     | --------------------------------------------------
[2026-01-24 19:39:55] 2026-01-25 00:39:23,799 | INFO     | 
[2026-01-24 19:39:55] 2026-01-25 00:39:23,799 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-24 19:39:55] 2026-01-25 00:39:23,825 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-24 19:39:55] 2026-01-25 00:39:23,825 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-24 19:39:55] 2026-01-25 00:39:23,826 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-24 19:39:55] 2026-01-25 00:39:23,826 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-24 19:39:55] 2026-01-25 00:39:23,826 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-24 19:39:55] 2026-01-25 00:39:23,826 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-24 19:39:55] 2026-01-25 00:39:23,826 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-24 19:39:55] 2026-01-25 00:39:23,826 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-24 19:39:55] 2026-01-25 00:39:23,827 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-24 19:39:55] 2026-01-25 00:39:23,827 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-24 19:39:55] 2026-01-25 00:39:23,827 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-24 19:39:55] 2026-01-25 00:39:23,827 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-24 19:39:55] 2026-01-25 00:39:23,827 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-24 19:39:55] 2026-01-25 00:39:23,827 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-24 19:39:55] 2026-01-25 00:39:23,828 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-24 19:39:55] 2026-01-25 00:39:23,828 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-24 19:39:55] 2026-01-25 00:39:23,828 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-24 19:39:55] 2026-01-25 00:39:23,828 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-24 19:39:55] 2026-01-25 00:39:23,828 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-24 19:39:55] 2026-01-25 00:39:23,829 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-24 19:39:55] 2026-01-25 00:39:23,829 | INFO     | job 6980376543 has completed (purged errors)
[2026-01-24 19:39:55] 2026-01-25 00:39:23,829 | INFO     | overall cleanup function is called
[2026-01-24 19:39:55] 2026-01-25 00:39:24,837 | INFO     | --- collectZombieJob: --- 10, [14029]
[2026-01-24 19:39:55] 2026-01-25 00:39:24,838 | INFO     | zombie collector waiting for pid 14029
[2026-01-24 19:39:55] 2026-01-25 00:39:24,846 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-24 19:39:55] 2026-01-25 00:39:24,847 | INFO     | collected zombie processes
[2026-01-24 19:39:55] 2026-01-25 00:39:24,847 | INFO     | will attempt to kill all subprocesses of pid=14029
[2026-01-24 19:39:55] 2026-01-25 00:39:24,938 | INFO     | process IDs to be killed: [14029] (in reverse order)
[2026-01-24 19:39:55] 2026-01-25 00:39:24,992 | WARNING  | found no corresponding commands to process id(s)
[2026-01-24 19:39:55] 2026-01-25 00:39:24,992 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-24 19:39:55] 2026-01-25 00:39:24,996 | INFO     | did not find any defunct processes belonging to 14029
[2026-01-24 19:39:55] 2026-01-25 00:39:24,998 | INFO     | did not find any defunct processes belonging to 14029
[2026-01-24 19:39:55] 2026-01-25 00:39:24,998 | INFO     | ready for new job
[2026-01-24 19:39:55] 2026-01-25 00:39:24,998 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-24 19:39:55] 2026-01-25 00:39:24,999 | INFO     | **************************************
[2026-01-24 19:39:55] 2026-01-25 00:39:24,999 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-24 19:39:55] 2026-01-25 00:39:25,000 | INFO     | **************************************
[2026-01-24 19:39:55] 2026-01-25 00:39:25,000 | INFO     | 
[2026-01-24 19:39:55] 2026-01-25 00:39:25,000 | INFO     | architecture information:
[2026-01-24 19:39:55] 2026-01-25 00:39:25,001 | INFO     | executing command: cat /etc/os-release
[2026-01-24 19:39:55] 2026-01-25 00:39:25,015 | INFO     | cat /etc/os-release:
[2026-01-24 19:39:55] NAME="CentOS Linux"
[2026-01-24 19:39:55] VERSION="7 (Core)"
[2026-01-24 19:39:55] ID="centos"
[2026-01-24 19:39:55] ID_LIKE="rhel fedora"
[2026-01-24 19:39:55] VERSION_ID="7"
[2026-01-24 19:39:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-24 19:39:55] ANSI_COLOR="0;31"
[2026-01-24 19:39:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-24 19:39:55] HOME_URL="https://www.centos.org/"
[2026-01-24 19:39:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-24 19:39:55] 
[2026-01-24 19:39:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-24 19:39:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-24 19:39:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-24 19:39:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-24 19:39:55] 
[2026-01-24 19:39:55] 2026-01-25 00:39:25,015 | INFO     | **************************************
[2026-01-24 19:39:55] 2026-01-25 00:39:25,519 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-24 19:39:55] 2026-01-25 00:39:25,534 | INFO     | sufficient remaining disk space (28806479872 B)
[2026-01-24 19:39:55] 2026-01-25 00:39:25,535 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-24 19:39:55] 2026-01-25 00:39:25,535 | INFO     | current server update state: UPDATING_FINAL
[2026-01-24 19:39:55] 2026-01-25 00:39:25,535 | INFO     | update_server=False
[2026-01-24 19:39:55] 2026-01-25 00:39:25,535 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-24 19:39:55] 2026-01-25 00:39:25,535 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-24 19:39:55] 2026-01-25 00:39:25,536 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-24 19:39:55] 2026-01-25 00:39:26,163 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-24 19:39:55] 2026-01-25 00:39:26,163 | INFO     | aborting loop
[2026-01-24 19:39:55] 2026-01-25 00:39:26,264 | INFO     | all data control threads have been joined
[2026-01-24 19:39:55] 2026-01-25 00:39:26,450 | INFO     | all job control threads have been joined
[2026-01-24 19:39:55] 2026-01-25 00:39:26,541 | INFO     | [job] retrieve thread has finished
[2026-01-24 19:39:55] 2026-01-25 00:39:26,541 | INFO     | [job] queue monitor thread has finished
[2026-01-24 19:39:55] 2026-01-25 00:39:26,655 | INFO     | all payload control threads have been joined
[2026-01-24 19:39:55] 2026-01-25 00:39:26,849 | INFO     | [payload] validate_post thread has finished
[2026-01-24 19:39:55] 2026-01-25 00:39:26,900 | INFO     | [data] copytool_in thread has finished
[2026-01-24 19:39:55] 2026-01-25 00:39:27,002 | INFO     | [payload] failed_post thread has finished
[2026-01-24 19:39:55] 2026-01-25 00:39:27,168 | INFO     | [job] job monitor thread has finished
[2026-01-24 19:39:55] 2026-01-25 00:39:27,270 | INFO     | [data] control thread has finished
[2026-01-24 19:39:55] 2026-01-25 00:39:27,455 | INFO     | [job] control thread has finished
[2026-01-24 19:39:55] 2026-01-25 00:39:27,541 | INFO     | [data] copytool_out thread has finished
[2026-01-24 19:39:55] 2026-01-25 00:39:27,661 | INFO     | [payload] control thread has finished
[2026-01-24 19:39:55] 2026-01-25 00:39:27,760 | INFO     | [job] validate thread has finished
[2026-01-24 19:39:55] 2026-01-25 00:39:27,764 | INFO     | [job] create_data_payload thread has finished
[2026-01-24 19:39:55] 2026-01-25 00:39:27,976 | INFO     | [payload] execute_payloads thread has finished
[2026-01-24 19:39:55] 2026-01-25 00:39:28,037 | INFO     | [payload] validate_pre thread has finished
[2026-01-24 19:39:55] 2026-01-25 00:39:28,140 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-24 19:39:55] 2026-01-25 00:39:32,099 | INFO     | [monitor] cgroup control has ended
[2026-01-24 19:39:55] 2026-01-25 00:39:32,146 | INFO     | [data] queue_monitor thread has finished
[2026-01-24 19:39:55] 2026-01-25 00:39:36,132 | INFO     | job.realtimelogging is not enabled
[2026-01-24 19:39:55] 2026-01-25 00:39:37,137 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-24 19:39:55] 2026-01-25 00:39:37,591 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140614404507456)>', '<ExcThread(monitor, started 140613529888512)>']
[2026-01-24 19:39:55] 2026-01-25 00:39:42,616 | INFO     | all workflow threads have been joined
[2026-01-24 19:39:55] 2026-01-25 00:39:42,616 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-24 19:39:55] 2026-01-25 00:39:42,617 | INFO     | traces error code: 0
[2026-01-24 19:39:55] 2026-01-25 00:39:42,617 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-24 19:39:55] 2026-01-25 00:39:55,050 | INFO     | PID=9655 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-24 19:39:55] 2026-01-25 00:39:55,050 | INFO     | found 0 job(s) in 20 queues
[2026-01-24 19:39:55] 2026-01-25 00:39:55,050 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-24 19:39:55] 2026-01-25 00:39:55,051 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-24 19:39:55] 2026-01-25 00:39:55,051 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-24 19:39:55] 2026-01-25 00:39:55,051 | INFO     | [monitor] control thread has ended
[2026-01-24 19:39:55] 2026-01-25 00:39:55,127 [wrapper] ==== pilot stdout END ====
[2026-01-24 19:39:55] 2026-01-25 00:39:55,131 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-24 19:39:55] 2026-01-25 00:39:55,135 [wrapper] pilotpid: 9655
[2026-01-24 19:39:55] 2026-01-25 00:39:55,138 [wrapper] Pilot exit status: 0
[2026-01-24 19:39:55] 2026-01-25 00:39:55,154 [wrapper] pandaids: 6980376543
[2026-01-24 19:39:55] 2026-01-25 00:39:55,193 [wrapper] cleanup supervisor_pilot 32333 9656
[2026-01-24 19:39:55] 2026-01-25 00:39:55,197 [wrapper] Test setup, not cleaning
[2026-01-24 19:39:55] 2026-01-25 00:39:55,201 [wrapper] apfmon messages muted
[2026-01-24 19:39:55] 2026-01-25 00:39:55,205 [wrapper] ==== wrapper stdout END ====
[2026-01-24 19:39:55] 2026-01-25 00:39:55,209 [wrapper] ==== wrapper stderr END ====
[2026-01-24 19:39:55]  *** Error codes and diagnostics ***
[2026-01-24 19:39:55]     "exeErrorCode": 0,
[2026-01-24 19:39:55]     "exeErrorDiag": "",
[2026-01-24 19:39:55]     "pilotErrorCode": 0,
[2026-01-24 19:39:55]     "pilotErrorDiag": "",
[2026-01-24 19:39:55]  *** Listing of results directory ***
[2026-01-24 19:39:55] total 666256
[2026-01-24 19:39:55] -rw-r--r-- 1 boincer umatlas    584422 Jan 24 01:02 pilot3.tar.gz
[2026-01-24 19:39:55] -rwx------ 1 boincer umatlas     36322 Jan 24 01:04 runpilot2-wrapper.sh
[2026-01-24 19:39:55] -rw-r--r-- 1 boincer umatlas      5111 Jan 24 01:06 queuedata.json
[2026-01-24 19:39:55] -rw-r--r-- 1 boincer umatlas       100 Jan 24 18:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-24 19:39:55] -rwxr-xr-x 1 boincer umatlas      7986 Jan 24 18:32 run_atlas
[2026-01-24 19:39:55] -rw-r--r-- 1 boincer umatlas       105 Jan 24 18:32 job.xml
[2026-01-24 19:39:55] -rw-r--r-- 2 boincer umatlas 494729365 Jan 24 18:32 EVNT.48310721._000037.pool.root.1
[2026-01-24 19:39:55] -rw-r--r-- 2 boincer umatlas     15845 Jan 24 18:32 start_atlas.sh
[2026-01-24 19:39:55] drwxrwx--x 2 boincer umatlas      4096 Jan 24 18:32 shared
[2026-01-24 19:39:55] -rw-r--r-- 2 boincer umatlas    597756 Jan 24 18:32 input.tar.gz
[2026-01-24 19:39:55] -rw-r--r-- 1 boincer umatlas         0 Jan 24 18:32 boinc_lockfile
[2026-01-24 19:39:55] -rw-r--r-- 1 boincer umatlas      2530 Jan 24 18:32 pandaJob.out
[2026-01-24 19:39:55] -rw------- 1 boincer umatlas        57 Jan 24 18:32 setup.sh.local
[2026-01-24 19:39:55] -rw------- 1 boincer umatlas   1004254 Jan 24 18:32 agis_schedconf.cvmfs.json
[2026-01-24 19:39:55] -rw------- 1 boincer umatlas   1516246 Jan 24 18:32 agis_ddmendpoints.agis.ALL.json
[2026-01-24 19:39:55] -rw------- 1 boincer umatlas       433 Jan 24 18:32 workernode_map.json
[2026-01-24 19:39:55] drwx------ 5 boincer umatlas      4096 Jan 24 18:32 pilot3
[2026-01-24 19:39:55] -rw-r--r-- 1 boincer umatlas      5953 Jan 24 19:37 init_data.xml
[2026-01-24 19:39:55] -rw------- 1 boincer umatlas 181650415 Jan 24 19:38 HITS.48310724._001811.pool.root.1
[2026-01-24 19:39:55] -rw-r--r-- 1 boincer umatlas       530 Jan 24 19:39 boinc_task_state.xml
[2026-01-24 19:39:55] -rw------- 1 boincer umatlas        95 Jan 24 19:39 pilot_heartbeat.json
[2026-01-24 19:39:55] -rw------- 1 boincer umatlas      1057 Jan 24 19:39 memory_monitor_summary.json
[2026-01-24 19:39:55] -rw------- 1 boincer umatlas    375002 Jan 24 19:39 log.48310724._001811.job.log.tgz.1
[2026-01-24 19:39:55] -rw------- 1 boincer umatlas      6403 Jan 24 19:39 heartbeat.json
[2026-01-24 19:39:55] -rw-r--r-- 1 boincer umatlas        27 Jan 24 19:39 wrapper_checkpoint.txt
[2026-01-24 19:39:55] -rw-r--r-- 1 boincer umatlas      8192 Jan 24 19:39 boinc_mmap_file
[2026-01-24 19:39:55] -rw------- 1 boincer umatlas       744 Jan 24 19:39 pilotlog.txt
[2026-01-24 19:39:55] -rw------- 1 boincer umatlas    590109 Jan 24 19:39 log.48310724._001811.job.log.1
[2026-01-24 19:39:55] -rw------- 1 boincer umatlas       357 Jan 24 19:39 output.list
[2026-01-24 19:39:55] -rw-r--r-- 1 boincer umatlas       620 Jan 24 19:39 runtime_log
[2026-01-24 19:39:55] -rw------- 1 boincer umatlas    983040 Jan 24 19:39 result.tar.gz
[2026-01-24 19:39:55] -rw------- 1 boincer umatlas       659 Jan 24 19:39 esDODmQwl38nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyd4KDmM8G3zm.diag
[2026-01-24 19:39:55] -rw-r--r-- 1 boincer umatlas      9343 Jan 24 19:39 runtime_log.err
[2026-01-24 19:39:55] -rw-r--r-- 1 boincer umatlas     21273 Jan 24 19:39 stderr.txt
[2026-01-24 19:39:55] HITS file was successfully produced:
[2026-01-24 19:39:55] -rw------- 1 boincer umatlas 181650415 Jan 24 19:38 shared/HITS.pool.root.1
[2026-01-24 19:39:55]  *** Contents of shared directory: ***
[2026-01-24 19:39:55] total 662092
[2026-01-24 19:39:55] -rw-r--r-- 2 boincer umatlas 494729365 Jan 24 18:32 ATLAS.root_0
[2026-01-24 19:39:55] -rw-r--r-- 2 boincer umatlas     15845 Jan 24 18:32 start_atlas.sh
[2026-01-24 19:39:55] -rw-r--r-- 2 boincer umatlas    597756 Jan 24 18:32 input.tar.gz
[2026-01-24 19:39:55] -rw------- 1 boincer umatlas 181650415 Jan 24 19:38 HITS.pool.root.1
[2026-01-24 19:39:55] -rw------- 1 boincer umatlas    983040 Jan 24 19:39 result.tar.gz
19:39:56 (5669): run_atlas exited; CPU time 44084.884836
19:39:56 (5669): called boinc_finish(0)

</stderr_txt>
]]>

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