Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:54:33 (13755): wrapper (7.7.26015): starting
08:54:33 (13755): wrapper: running run_atlas (--nthreads 8)
[2026-01-25 08:54:33] Arguments: --nthreads 8
[2026-01-25 08:54:33] Threads: 8
[2026-01-25 08:54:33] Checking for CVMFS
[2026-01-25 08:54:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-25 08:54:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-25 08:54:36] Running cvmfs_config stat atlas.cern.ch
[2026-01-25 08:54:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-25 08:54:38] 2.11.2.0 23879 58181 136948 155501 3 57 22309640 25165824 4166 130560 0 14169357 99.686 16536607 2098 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-25 08:54:38] CVMFS is ok
[2026-01-25 08:54:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-25 08:54:38] Checking for apptainer binary...
[2026-01-25 08:54:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-25 08:54:38] Running /usr/bin/apptainer --version
[2026-01-25 08:54:38] apptainer version 1.3.2-1.el7
[2026-01-25 08:54:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-25 08:54:47] cg-vwn385.simple-grid.lan
[2026-01-25 08:54:47] apptainer works
[2026-01-25 08:54:47] Set ATHENA_PROC_NUMBER=8
[2026-01-25 08:54:47] Set ATHENA_CORE_NUMBER=8
[2026-01-25 08:54:47] Starting ATLAS job with PandaID=6981221955
[2026-01-25 08:54:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-25 13:12:40]  *** The last 200 lines of the pilot log: ***
[2026-01-25 13:12:40] 2026-01-25 12:11:49,541 | INFO     | total number of processed events: 400 (read)
[2026-01-25 13:12:40] 2026-01-25 12:11:49,543 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6981221955/memory_monitor_summary.json (trf name=prmon)
[2026-01-25 13:12:40] 2026-01-25 12:11:49,544 | INFO     | extracted standard info from prmon json
[2026-01-25 13:12:40] 2026-01-25 12:11:49,544 | INFO     | extracted standard memory fields from prmon json
[2026-01-25 13:12:40] 2026-01-25 12:11:49,545 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-25 13:12:40] 2026-01-25 12:11:49,545 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-25 13:12:40] 2026-01-25 12:11:49,545 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-25 13:12:40] 2026-01-25 12:11:49,550 | INFO     | fitting pss+swap vs Time
[2026-01-25 13:12:40] 2026-01-25 12:11:49,551 | INFO     | sum of square deviations: 4504437945.0
[2026-01-25 13:12:40] 2026-01-25 12:11:49,553 | INFO     | sum of deviations: 93800263426.5
[2026-01-25 13:12:40] 2026-01-25 12:11:49,554 | INFO     | mean x: 1769335664.5
[2026-01-25 13:12:40] 2026-01-25 12:11:49,554 | INFO     | mean y: 2427577.118852459
[2026-01-25 13:12:40] 2026-01-25 12:11:49,554 | INFO     | intersect: -36842158461.462135
[2026-01-25 13:12:40] 2026-01-25 12:11:49,554 | INFO     | chi2: 5.327680402216547
[2026-01-25 13:12:40] 2026-01-25 12:11:49,555 | INFO     | sum of square deviations: 4233158440.0
[2026-01-25 13:12:40] 2026-01-25 12:11:49,557 | INFO     | sum of deviations: 107728416027.0
[2026-01-25 13:12:40] 2026-01-25 12:11:49,557 | INFO     | mean x: 1769335512.0
[2026-01-25 13:12:40] 2026-01-25 12:11:49,557 | INFO     | mean y: 2435255.958158996
[2026-01-25 13:12:40] 2026-01-25 12:11:49,558 | INFO     | intersect: -45024868784.20931
[2026-01-25 13:12:40] 2026-01-25 12:11:49,558 | INFO     | chi2: 4.584124577649196
[2026-01-25 13:12:40] 2026-01-25 12:11:49,558 | INFO     | current chi2=4.584124577649196 (change=13.956464510483762 %)
[2026-01-25 13:12:40] 2026-01-25 12:11:49,558 | INFO     | right removable region: 238
[2026-01-25 13:12:40] 2026-01-25 12:11:49,559 | INFO     | sum of square deviations: 4233158440.0
[2026-01-25 13:12:40] 2026-01-25 12:11:49,561 | INFO     | sum of deviations: 14438185525.999998
[2026-01-25 13:12:40] 2026-01-25 12:11:49,561 | INFO     | mean x: 1769335817.0
[2026-01-25 13:12:40] 2026-01-25 12:11:49,561 | INFO     | mean y: 2472137.2133891215
[2026-01-25 13:12:40] 2026-01-25 12:11:49,562 | INFO     | intersect: -6032265079.861524
[2026-01-25 13:12:40] 2026-01-25 12:11:49,562 | INFO     | chi2: 1.1929856853983483
[2026-01-25 13:12:40] 2026-01-25 12:11:49,562 | INFO     | current chi2=1.1929856853983483 (change=77.60778433890265 %)
[2026-01-25 13:12:40] 2026-01-25 12:11:49,563 | INFO     | sum of square deviations: 3972995422.5
[2026-01-25 13:12:40] 2026-01-25 12:11:49,565 | INFO     | sum of deviations: -4214596628.000002
[2026-01-25 13:12:40] 2026-01-25 12:11:49,565 | INFO     | mean x: 1769335969.5
[2026-01-25 13:12:40] 2026-01-25 12:11:49,565 | INFO     | mean y: 2482964.1025641025
[2026-01-25 13:12:40] 2026-01-25 12:11:49,565 | INFO     | intersect: 1879413747.5167286
[2026-01-25 13:12:40] 2026-01-25 12:11:49,566 | INFO     | chi2: 0.8009290401946539
[2026-01-25 13:12:40] 2026-01-25 12:11:49,566 | INFO     | current chi2=0.8009290401946539 (change=32.863482772870256 %)
[2026-01-25 13:12:40] 2026-01-25 12:11:49,566 | INFO     | sum of square deviations: 3723716330.0
[2026-01-25 13:12:40] 2026-01-25 12:11:49,569 | INFO     | sum of deviations: -6857699666.0
[2026-01-25 13:12:40] 2026-01-25 12:11:49,569 | INFO     | mean x: 1769336122.0
[2026-01-25 13:12:40] 2026-01-25 12:11:49,569 | INFO     | mean y: 2484576.689956332
[2026-01-25 13:12:40] 2026-01-25 12:11:49,569 | INFO     | intersect: 3260943239.3779206
[2026-01-25 13:12:40] 2026-01-25 12:11:49,569 | INFO     | chi2: 0.7971317540524241
[2026-01-25 13:12:40] 2026-01-25 12:11:49,570 | INFO     | current chi2=0.7971317540524241 (change=0.474110183507265 %)
[2026-01-25 13:12:40] 2026-01-25 12:11:49,570 | INFO     | left removable region: 30
[2026-01-25 13:12:40] 2026-01-25 12:11:49,570 | INFO     | sum of square deviations: 2790348132.0
[2026-01-25 13:12:40] 2026-01-25 12:11:49,572 | INFO     | sum of deviations: 4120739313.5000005
[2026-01-25 13:12:40] 2026-01-25 12:11:49,572 | INFO     | mean x: 1769336396.5
[2026-01-25 13:12:40] 2026-01-25 12:11:49,572 | INFO     | mean y: 2496810.408653846
[2026-01-25 13:12:40] 2026-01-25 12:11:49,573 | INFO     | intersect: -2610429499.4844856
[2026-01-25 13:12:40] 2026-01-25 12:11:49,573 | INFO     | chi2: 0.000512696034421082
[2026-01-25 13:12:40] 2026-01-25 12:11:49,573 | INFO     | current memory leak: 1.48 B/s (using 208 data points, chi2=0.00)
[2026-01-25 13:12:40] 2026-01-25 12:11:49,574 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2026-01-25 13:12:40] 2026-01-25 12:11:49,574 | INFO     | ..............................
[2026-01-25 13:12:40] 2026-01-25 12:11:49,574 | INFO     | . Timing measurements:
[2026-01-25 13:12:40] 2026-01-25 12:11:49,574 | INFO     | . get job = 0 s
[2026-01-25 13:12:40] 2026-01-25 12:11:49,574 | INFO     | . initial setup = 100 s
[2026-01-25 13:12:40] 2026-01-25 12:11:49,574 | INFO     | . payload setup = 117 s
[2026-01-25 13:12:40] 2026-01-25 12:11:49,574 | INFO     | . stage-in = 0 s
[2026-01-25 13:12:40] 2026-01-25 12:11:49,575 | INFO     | . payload execution = 14960 s
[2026-01-25 13:12:40] 2026-01-25 12:11:49,575 | INFO     | . stage-out = 1 s
[2026-01-25 13:12:40] 2026-01-25 12:11:49,575 | INFO     | . log creation = 0 s
[2026-01-25 13:12:40] 2026-01-25 12:11:49,575 | INFO     | ..............................
[2026-01-25 13:12:40] 2026-01-25 12:11:49,845 | INFO     | 
[2026-01-25 13:12:40] 2026-01-25 12:11:49,845 | INFO     | job summary report
[2026-01-25 13:12:40] 2026-01-25 12:11:49,845 | INFO     | --------------------------------------------------
[2026-01-25 13:12:40] 2026-01-25 12:11:49,845 | INFO     | PanDA job id: 6981221955
[2026-01-25 13:12:40] 2026-01-25 12:11:49,845 | INFO     | task id: 48301086
[2026-01-25 13:12:40] 2026-01-25 12:11:49,845 | INFO     | errors: (none)
[2026-01-25 13:12:40] 2026-01-25 12:11:49,846 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-25 13:12:40] 2026-01-25 12:11:49,846 | INFO     | pilot state: finished 
[2026-01-25 13:12:40] 2026-01-25 12:11:49,846 | INFO     | transexitcode: 0
[2026-01-25 13:12:40] 2026-01-25 12:11:49,846 | INFO     | exeerrorcode: 0
[2026-01-25 13:12:40] 2026-01-25 12:11:49,846 | INFO     | exeerrordiag: 
[2026-01-25 13:12:40] 2026-01-25 12:11:49,846 | INFO     | exitcode: 0
[2026-01-25 13:12:40] 2026-01-25 12:11:49,846 | INFO     | exitmsg: OK
[2026-01-25 13:12:40] 2026-01-25 12:11:49,846 | INFO     | cpuconsumptiontime: 55319 s
[2026-01-25 13:12:40] 2026-01-25 12:11:49,846 | INFO     | nevents: 400
[2026-01-25 13:12:40] 2026-01-25 12:11:49,846 | INFO     | neventsw: 0
[2026-01-25 13:12:40] 2026-01-25 12:11:49,846 | INFO     | pid: 22369
[2026-01-25 13:12:40] 2026-01-25 12:11:49,847 | INFO     | pgrp: 22369
[2026-01-25 13:12:40] 2026-01-25 12:11:49,847 | INFO     | corecount: 8
[2026-01-25 13:12:40] 2026-01-25 12:11:49,847 | INFO     | event service: False
[2026-01-25 13:12:40] 2026-01-25 12:11:49,847 | INFO     | sizes: {0: 2283098, 1: 2283784, 2: 2284245, 13: 2284245, 15082: 2315251, 15085: 2324251, 15087: 2324435, 15090: 2324629}
[2026-01-25 13:12:40] 2026-01-25 12:11:49,847 | INFO     | --------------------------------------------------
[2026-01-25 13:12:40] 2026-01-25 12:11:49,847 | INFO     | 
[2026-01-25 13:12:40] 2026-01-25 12:11:49,847 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2026-01-25 13:12:40] 2026-01-25 12:11:49,891 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-25 13:12:40] 2026-01-25 12:11:49,891 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-25 13:12:40] 2026-01-25 12:11:49,892 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-25 13:12:40] 2026-01-25 12:11:49,892 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-25 13:12:40] 2026-01-25 12:11:49,892 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-25 13:12:40] 2026-01-25 12:11:49,892 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-25 13:12:40] 2026-01-25 12:11:49,892 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-25 13:12:40] 2026-01-25 12:11:49,892 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-25 13:12:40] 2026-01-25 12:11:49,892 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-25 13:12:40] 2026-01-25 12:11:49,892 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-25 13:12:40] 2026-01-25 12:11:49,892 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-25 13:12:40] 2026-01-25 12:11:49,892 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-25 13:12:40] 2026-01-25 12:11:49,893 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-25 13:12:40] 2026-01-25 12:11:49,893 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-25 13:12:40] 2026-01-25 12:11:49,893 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-25 13:12:40] 2026-01-25 12:11:49,893 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-25 13:12:40] 2026-01-25 12:11:49,893 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-25 13:12:40] 2026-01-25 12:11:49,893 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-25 13:12:40] 2026-01-25 12:11:49,893 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-25 13:12:40] 2026-01-25 12:11:49,893 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-25 13:12:40] 2026-01-25 12:11:49,893 | INFO     | job 6981221955 has completed (purged errors)
[2026-01-25 13:12:40] 2026-01-25 12:11:49,894 | INFO     | overall cleanup function is called
[2026-01-25 13:12:40] 2026-01-25 12:11:50,903 | INFO     | --- collectZombieJob: --- 10, [22369]
[2026-01-25 13:12:40] 2026-01-25 12:11:50,904 | INFO     | zombie collector waiting for pid 22369
[2026-01-25 13:12:40] 2026-01-25 12:11:50,904 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-25 13:12:40] 2026-01-25 12:11:50,904 | INFO     | collected zombie processes
[2026-01-25 13:12:40] 2026-01-25 12:11:50,904 | INFO     | will attempt to kill all subprocesses of pid=22369
[2026-01-25 13:12:40] 2026-01-25 12:11:51,010 | INFO     | process IDs to be killed: [22369] (in reverse order)
[2026-01-25 13:12:40] 2026-01-25 12:11:51,067 | WARNING  | found no corresponding commands to process id(s)
[2026-01-25 13:12:40] 2026-01-25 12:11:51,067 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-25 13:12:40] 2026-01-25 12:11:51,071 | INFO     | did not find any defunct processes belonging to 22369
[2026-01-25 13:12:40] 2026-01-25 12:11:51,074 | INFO     | did not find any defunct processes belonging to 22369
[2026-01-25 13:12:40] 2026-01-25 12:11:51,075 | INFO     | ready for new job
[2026-01-25 13:12:40] 2026-01-25 12:11:51,075 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-25 13:12:40] 2026-01-25 12:11:51,077 | INFO     | **************************************
[2026-01-25 13:12:40] 2026-01-25 12:11:51,077 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-25 13:12:40] 2026-01-25 12:11:51,077 | INFO     | **************************************
[2026-01-25 13:12:40] 2026-01-25 12:11:51,077 | INFO     | 
[2026-01-25 13:12:40] 2026-01-25 12:11:51,078 | INFO     | pilot is running in a VM
[2026-01-25 13:12:40] 2026-01-25 12:11:51,078 | INFO     | architecture information:
[2026-01-25 13:12:40] 2026-01-25 12:11:51,078 | INFO     | executing command: cat /etc/os-release
[2026-01-25 13:12:40] 2026-01-25 12:11:51,096 | INFO     | cat /etc/os-release:
[2026-01-25 13:12:40] NAME="CentOS Linux"
[2026-01-25 13:12:40] VERSION="7 (Core)"
[2026-01-25 13:12:40] ID="centos"
[2026-01-25 13:12:40] ID_LIKE="rhel fedora"
[2026-01-25 13:12:40] VERSION_ID="7"
[2026-01-25 13:12:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-25 13:12:40] ANSI_COLOR="0;31"
[2026-01-25 13:12:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-25 13:12:40] HOME_URL="https://www.centos.org/"
[2026-01-25 13:12:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-25 13:12:40] 
[2026-01-25 13:12:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-25 13:12:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-25 13:12:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-25 13:12:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-25 13:12:40] 
[2026-01-25 13:12:40] 2026-01-25 12:11:51,096 | INFO     | **************************************
[2026-01-25 13:12:40] 2026-01-25 12:11:51,598 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2026-01-25 13:12:40] 2026-01-25 12:11:51,623 | INFO     | sufficient remaining disk space (496499687424 B)
[2026-01-25 13:12:40] 2026-01-25 12:11:51,623 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-25 13:12:40] 2026-01-25 12:11:51,624 | INFO     | current server update state: UPDATING_FINAL
[2026-01-25 13:12:40] 2026-01-25 12:11:51,624 | INFO     | update_server=False
[2026-01-25 13:12:40] 2026-01-25 12:11:51,624 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-25 13:12:40] 2026-01-25 12:11:51,624 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-25 13:12:40] 2026-01-25 12:11:51,625 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-25 13:12:40] 2026-01-25 12:11:51,637 | INFO     | all data control threads have been joined
[2026-01-25 13:12:40] 2026-01-25 12:11:51,848 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-25 13:12:40] 2026-01-25 12:11:51,849 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-25 13:12:40] 2026-01-25 12:11:51,849 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-25 13:12:40] 2026-01-25 12:11:51,849 | INFO     | will abort loop
[2026-01-25 13:12:40] 2026-01-25 12:11:52,131 | INFO     | all job control threads have been joined
[2026-01-25 13:12:40] 2026-01-25 12:11:52,617 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-25 13:12:40] 2026-01-25 12:11:52,625 | INFO     | [job] retrieve thread has finished
[2026-01-25 13:12:40] 2026-01-25 12:11:52,626 | INFO     | [job] queue monitor thread has finished
[2026-01-25 13:12:40] 2026-01-25 12:11:52,642 | INFO     | [data] control thread has finished
[2026-01-25 13:12:40] 2026-01-25 12:11:52,804 | INFO     | all payload control threads have been joined
[2026-01-25 13:12:40] 2026-01-25 12:11:52,855 | INFO     | [job] job monitor thread has finished
[2026-01-25 13:12:40] 2026-01-25 12:11:52,977 | INFO     | [payload] validate_post thread has finished
[2026-01-25 13:12:40] 2026-01-25 12:11:53,031 | INFO     | [payload] validate_pre thread has finished
[2026-01-25 13:12:40] 2026-01-25 12:11:53,117 | INFO     | [job] create_data_payload thread has finished
[2026-01-25 13:12:40] 2026-01-25 12:11:53,137 | INFO     | [job] control thread has finished
[2026-01-25 13:12:40] 2026-01-25 12:11:53,315 | INFO     | [payload] execute_payloads thread has finished
[2026-01-25 13:12:40] 2026-01-25 12:11:53,615 | INFO     | [payload] failed_post thread has finished
[2026-01-25 13:12:40] 2026-01-25 12:11:53,633 | INFO     | [data] copytool_out thread has finished
[2026-01-25 13:12:40] 2026-01-25 12:11:53,751 | INFO     | [job] validate thread has finished
[2026-01-25 13:12:40] 2026-01-25 12:11:53,810 | INFO     | [payload] control thread has finished
[2026-01-25 13:12:40] 2026-01-25 12:11:53,854 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-25 13:12:40] 2026-01-25 12:11:54,008 | INFO     | [data] copytool_in thread has finished
[2026-01-25 13:12:40] 2026-01-25 12:11:56,625 | INFO     | [data] queue_monitor thread has finished
[2026-01-25 13:12:40] 2026-01-25 12:12:22,516 | INFO     | PID=17868 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-25 13:12:40] 2026-01-25 12:12:22,516 | INFO     | .. there are 8 such processes running
[2026-01-25 13:12:40] 2026-01-25 12:12:22,517 | INFO     | found 0 job(s) in 20 queues
[2026-01-25 13:12:40] 2026-01-25 12:12:22,517 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-25 13:12:40] 2026-01-25 12:12:22,517 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-25 13:12:40] 2026-01-25 12:12:32,399 | INFO     | [monitor] cgroup control has ended
[2026-01-25 13:12:40] 2026-01-25 12:12:33,778 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140631575537472)>', '<ExcThread(monitor, started 140630885906176)>']
[2026-01-25 13:12:40] 2026-01-25 12:12:34,588 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-25 13:12:40] 2026-01-25 12:12:34,589 | INFO     | [monitor] control thread has ended
[2026-01-25 13:12:40] 2026-01-25 12:12:38,804 | INFO     | all workflow threads have been joined
[2026-01-25 13:12:40] 2026-01-25 12:12:38,805 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-25 13:12:40] 2026-01-25 12:12:38,805 | INFO     | traces error code: 0
[2026-01-25 13:12:40] 2026-01-25 12:12:38,805 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-25 13:12:40] 2026-01-25 12:12:39,044 [wrapper] ==== pilot stdout END ====
[2026-01-25 13:12:40] 2026-01-25 12:12:39,095 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-25 13:12:40] 2026-01-25 12:12:39,115 [wrapper] pilotpid: 17868
[2026-01-25 13:12:40] 2026-01-25 12:12:39,173 [wrapper] Pilot exit status: 0
[2026-01-25 13:12:40] 2026-01-25 12:12:39,267 [wrapper] pandaids: 6981221955
[2026-01-25 13:12:40] 2026-01-25 12:12:39,321 [wrapper] cleanup supervisor_pilot 29239 17869
[2026-01-25 13:12:40] 2026-01-25 12:12:39,331 [wrapper] Test setup, not cleaning
[2026-01-25 13:12:40] 2026-01-25 12:12:39,334 [wrapper] apfmon messages muted
[2026-01-25 13:12:40] 2026-01-25 12:12:39,347 [wrapper] ==== wrapper stdout END ====
[2026-01-25 13:12:40] 2026-01-25 12:12:39,374 [wrapper] ==== wrapper stderr END ====
[2026-01-25 13:12:40]  *** Error codes and diagnostics ***
[2026-01-25 13:12:40]     "exeErrorCode": 0,
[2026-01-25 13:12:40]     "exeErrorDiag": "",
[2026-01-25 13:12:40]     "pilotErrorCode": 0,
[2026-01-25 13:12:40]     "pilotErrorDiag": "",
[2026-01-25 13:12:40]  *** Listing of results directory ***
[2026-01-25 13:12:40] total 668768
[2026-01-25 13:12:40] -rwx------. 1 boinc boinc     36322 Jan 24 15:27 runpilot2-wrapper.sh
[2026-01-25 13:12:40] -rw-r--r--. 1 boinc boinc      5111 Jan 24 15:28 queuedata.json
[2026-01-25 13:12:40] -rw-r--r--. 1 boinc boinc    584422 Jan 24 15:28 pilot3.tar.gz
[2026-01-25 13:12:40] -rw-r--r--. 1 boinc boinc       100 Jan 25 08:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-25 13:12:40] -rwxr-xr-x. 1 boinc boinc      7986 Jan 25 08:54 run_atlas
[2026-01-25 13:12:40] -rw-r--r--. 1 boinc boinc       105 Jan 25 08:54 job.xml
[2026-01-25 13:12:40] -rw-r--r--. 1 boinc boinc      6392 Jan 25 08:54 init_data.xml
[2026-01-25 13:12:40] -rw-r--r--. 2 boinc boinc 497752045 Jan 25 08:54 EVNT.48301084._000083.pool.root.1
[2026-01-25 13:12:40] -rw-r--r--. 2 boinc boinc     15845 Jan 25 08:54 start_atlas.sh
[2026-01-25 13:12:40] drwxrwx--x. 2 boinc boinc        68 Jan 25 08:54 shared
[2026-01-25 13:12:40] -rw-r--r--. 2 boinc boinc    597764 Jan 25 08:54 input.tar.gz
[2026-01-25 13:12:40] -rw-r--r--. 1 boinc boinc         0 Jan 25 08:54 boinc_lockfile
[2026-01-25 13:12:40] -rw-r--r--. 1 boinc boinc      2519 Jan 25 08:54 pandaJob.out
[2026-01-25 13:12:40] -rw-------. 1 boinc boinc       415 Jan 25 09:00 workernode_map.json
[2026-01-25 13:12:40] -rw-------. 1 boinc boinc   1004246 Jan 25 09:00 agis_schedconf.cvmfs.json
[2026-01-25 13:12:40] drwx------. 5 boinc boinc      4096 Jan 25 09:00 pilot3
[2026-01-25 13:12:40] -rw-------. 1 boinc boinc 177905930 Jan 25 13:11 HITS.48301086._010677.pool.root.1
[2026-01-25 13:12:40] -rw-r--r--. 1 boinc boinc       531 Jan 25 13:11 boinc_task_state.xml
[2026-01-25 13:12:40] -rw-------. 1 boinc boinc      1018 Jan 25 13:11 memory_monitor_summary.json
[2026-01-25 13:12:40] -rw-------. 1 boinc boinc   1516246 Jan 25 13:11 agis_ddmendpoints.agis.ALL.json
[2026-01-25 13:12:40] -rw-------. 1 boinc boinc    497405 Jan 25 13:11 log.48301086._010677.job.log.tgz.1
[2026-01-25 13:12:40] -rw-------. 1 boinc boinc      6320 Jan 25 13:11 heartbeat.json
[2026-01-25 13:12:40] -rw-------. 1 boinc boinc        95 Jan 25 13:12 pilot_heartbeat.json
[2026-01-25 13:12:40] -rw-r--r--. 1 boinc boinc      8192 Jan 25 13:12 boinc_mmap_file
[2026-01-25 13:12:40] -rw-r--r--. 1 boinc boinc        28 Jan 25 13:12 wrapper_checkpoint.txt
[2026-01-25 13:12:40] -rw-------. 1 boinc boinc      5067 Jan 25 13:12 pilotlog.txt
[2026-01-25 13:12:40] -rw-------. 1 boinc boinc   2118009 Jan 25 13:12 log.48301086._010677.job.log.1
[2026-01-25 13:12:40] -rw-------. 1 boinc boinc       357 Jan 25 13:12 output.list
[2026-01-25 13:12:40] -rw-r--r--. 1 boinc boinc       620 Jan 25 13:12 runtime_log
[2026-01-25 13:12:40] -rw-------. 1 boinc boinc   2631680 Jan 25 13:12 result.tar.gz
[2026-01-25 13:12:40] -rw-------. 1 boinc boinc       655 Jan 25 13:12 tBdLDmQnt38nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTF5KDmyovf8n.diag
[2026-01-25 13:12:40] -rw-r--r--. 1 boinc boinc      8832 Jan 25 13:12 runtime_log.err
[2026-01-25 13:12:40] -rw-r--r--. 1 boinc boinc     20726 Jan 25 13:12 stderr.txt
[2026-01-25 13:12:40] HITS file was successfully produced:
[2026-01-25 13:12:40] -rw-------. 1 boinc boinc 177905930 Jan 25 13:11 shared/HITS.pool.root.1
[2026-01-25 13:12:40]  *** Contents of shared directory: ***
[2026-01-25 13:12:40] total 663000
[2026-01-25 13:12:40] -rw-r--r--. 2 boinc boinc 497752045 Jan 25 08:54 ATLAS.root_0
[2026-01-25 13:12:40] -rw-r--r--. 2 boinc boinc     15845 Jan 25 08:54 start_atlas.sh
[2026-01-25 13:12:40] -rw-r--r--. 2 boinc boinc    597764 Jan 25 08:54 input.tar.gz
[2026-01-25 13:12:40] -rw-------. 1 boinc boinc 177905930 Jan 25 13:11 HITS.pool.root.1
[2026-01-25 13:12:40] -rw-------. 1 boinc boinc   2631680 Jan 25 13:12 result.tar.gz
13:12:41 (13755): run_atlas exited; CPU time 55563.769673
13:12:41 (13755): called boinc_finish(0)

</stderr_txt>
]]>

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