Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
13:35:05 (886465): wrapper (7.7.26015): starting
13:35:05 (886465): wrapper: running run_atlas (--nthreads 12)
[2026-01-26 13:35:05] Arguments: --nthreads 12
[2026-01-26 13:35:05] Threads: 12
[2026-01-26 13:35:05] Checking for CVMFS
[2026-01-26 13:35:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 13:35:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 13:35:05] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 13:35:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 13:35:05] 2.13.3.0 280120 2966 47180 155548 1 188 3466437 4096000 868 130560 0 1816716 99.987 112572 783 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-26 13:35:05] CVMFS is ok
[2026-01-26 13:35:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 13:35:05] Checking for apptainer binary...
[2026-01-26 13:35:05] apptainer is not installed, using version from CVMFS
[2026-01-26 13:35:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 13:35:06] martinpcalt
[2026-01-26 13:35:06] apptainer works
[2026-01-26 13:35:06] Set ATHENA_PROC_NUMBER=12
[2026-01-26 13:35:06] Set ATHENA_CORE_NUMBER=12
[2026-01-26 13:35:06] Starting ATLAS job with PandaID=6981030239
[2026-01-26 13:35:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 15:44:49]  *** The last 200 lines of the pilot log: ***
[2026-01-26 15:44:49] 2026-01-26 15:43:49,716 | INFO     | log transfer has been attempted: DONE
[2026-01-26 15:44:49] 2026-01-26 15:43:49,716 | INFO     | job 6981030239 has finished - writing final server update
[2026-01-26 15:44:49] 2026-01-26 15:43:49,716 | INFO     | total number of processed events: 400 (read)
[2026-01-26 15:44:49] 2026-01-26 15:43:49,738 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/0/PanDA_Pilot-6981030239/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 15:44:49] 2026-01-26 15:43:49,739 | INFO     | extracted standard info from prmon json
[2026-01-26 15:44:49] 2026-01-26 15:43:49,739 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 15:44:49] 2026-01-26 15:43:49,740 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 15:44:49] 2026-01-26 15:43:49,740 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 15:44:49] 2026-01-26 15:43:49,740 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 15:44:49] 2026-01-26 15:43:49,745 | INFO     | fitting pss+swap vs Time
[2026-01-26 15:44:49] 2026-01-26 15:43:49,746 | INFO     | sum of square deviations: 620244187.5
[2026-01-26 15:44:49] 2026-01-26 15:43:49,747 | INFO     | sum of deviations: 27382686439.000004
[2026-01-26 15:44:49] 2026-01-26 15:43:49,748 | INFO     | mean x: 1769438358.5
[2026-01-26 15:44:49] 2026-01-26 15:43:49,748 | INFO     | mean y: 2637539.761904762
[2026-01-26 15:44:49] 2026-01-26 15:43:49,748 | INFO     | intersect: -78114943761.9482
[2026-01-26 15:44:49] 2026-01-26 15:43:49,749 | INFO     | chi2: 1.691508663116821
[2026-01-26 15:44:49] 2026-01-26 15:43:49,749 | INFO     | sum of square deviations: 549294020.0
[2026-01-26 15:44:49] 2026-01-26 15:43:49,750 | INFO     | sum of deviations: 25768649253.0
[2026-01-26 15:44:49] 2026-01-26 15:43:49,751 | INFO     | mean x: 1769438206.0
[2026-01-26 15:44:49] 2026-01-26 15:43:49,751 | INFO     | mean y: 2634074.909090909
[2026-01-26 15:44:49] 2026-01-26 15:43:49,751 | INFO     | intersect: -83005792824.1705
[2026-01-26 15:44:49] 2026-01-26 15:43:49,752 | INFO     | chi2: 1.6934144357395866
[2026-01-26 15:44:49] 2026-01-26 15:43:49,752 | INFO     | current chi2=1.6934144357395866 (change=-0.11266703294643254 %)
[2026-01-26 15:44:49] 2026-01-26 15:43:49,752 | INFO     | right removable region: 120
[2026-01-26 15:44:49] 2026-01-26 15:43:49,752 | INFO     | sum of square deviations: 549294020.0
[2026-01-26 15:44:49] 2026-01-26 15:43:49,754 | INFO     | sum of deviations: 3148526590.000001
[2026-01-26 15:44:49] 2026-01-26 15:43:49,754 | INFO     | mean x: 1769438511.0
[2026-01-26 15:44:49] 2026-01-26 15:43:49,754 | INFO     | mean y: 2688968.7933884296
[2026-01-26 15:44:49] 2026-01-26 15:43:49,754 | INFO     | intersect: -10139646462.518078
[2026-01-26 15:44:49] 2026-01-26 15:43:49,755 | INFO     | chi2: 0.06173232270400428
[2026-01-26 15:44:49] 2026-01-26 15:43:49,755 | INFO     | current chi2=0.06173232270400428 (change=96.35045778658593 %)
[2026-01-26 15:44:49] 2026-01-26 15:43:49,756 | INFO     | sum of square deviations: 483971865.0
[2026-01-26 15:44:49] 2026-01-26 15:43:49,757 | INFO     | sum of deviations: -1187305280.9999998
[2026-01-26 15:44:49] 2026-01-26 15:43:49,757 | INFO     | mean x: 1769438663.5
[2026-01-26 15:44:49] 2026-01-26 15:43:49,757 | INFO     | mean y: 2698954.5689655175
[2026-01-26 15:44:49] 2026-01-26 15:43:49,757 | INFO     | intersect: 4343579120.359453
[2026-01-26 15:44:49] 2026-01-26 15:43:49,758 | INFO     | chi2: 0.005532764558371771
[2026-01-26 15:44:49] 2026-01-26 15:43:49,758 | INFO     | current chi2=0.005532764558371771 (change=91.03749168016824 %)
[2026-01-26 15:44:49] 2026-01-26 15:43:49,759 | INFO     | sum of square deviations: 424045160.0
[2026-01-26 15:44:49] 2026-01-26 15:43:49,760 | INFO     | sum of deviations: -1035448769.9999999
[2026-01-26 15:44:49] 2026-01-26 15:43:49,760 | INFO     | mean x: 1769438816.0
[2026-01-26 15:44:49] 2026-01-26 15:43:49,760 | INFO     | mean y: 2698552.09009009
[2026-01-26 15:44:49] 2026-01-26 15:43:49,760 | INFO     | intersect: 4323378089.18811
[2026-01-26 15:44:49] 2026-01-26 15:43:49,761 | INFO     | chi2: 0.005379726878384105
[2026-01-26 15:44:49] 2026-01-26 15:43:49,761 | INFO     | current chi2=0.005379726878384105 (change=2.7660255261739026 %)
[2026-01-26 15:44:49] 2026-01-26 15:43:49,761 | INFO     | left removable region: 30
[2026-01-26 15:44:49] 2026-01-26 15:43:49,762 | INFO     | sum of square deviations: 226022842.5
[2026-01-26 15:44:49] 2026-01-26 15:43:49,763 | INFO     | sum of deviations: -95070391.00000006
[2026-01-26 15:44:49] 2026-01-26 15:43:49,763 | INFO     | mean x: 1769439090.5
[2026-01-26 15:44:49] 2026-01-26 15:43:49,764 | INFO     | mean y: 2692568.066666667
[2026-01-26 15:44:49] 2026-01-26 15:43:49,764 | INFO     | intersect: 746959228.5681136
[2026-01-26 15:44:49] 2026-01-26 15:43:49,764 | INFO     | chi2: 0.003273979964412909
[2026-01-26 15:44:49] 2026-01-26 15:43:49,765 | INFO     | current memory leak: -0.42 B/s (using 90 data points, chi2=0.00)
[2026-01-26 15:44:49] 2026-01-26 15:43:49,765 | INFO     | could have reported an average CPU frequency of 2638 MHz (8 samples)
[2026-01-26 15:44:49] 2026-01-26 15:43:49,765 | INFO     | ..............................
[2026-01-26 15:44:49] 2026-01-26 15:43:49,766 | INFO     | . Timing measurements:
[2026-01-26 15:44:49] 2026-01-26 15:43:49,766 | INFO     | . get job = 0 s
[2026-01-26 15:44:49] 2026-01-26 15:43:49,766 | INFO     | . initial setup = 21 s
[2026-01-26 15:44:49] 2026-01-26 15:43:49,766 | INFO     | . payload setup = 2 s
[2026-01-26 15:44:49] 2026-01-26 15:43:49,766 | INFO     | . stage-in = 0 s
[2026-01-26 15:44:49] 2026-01-26 15:43:49,767 | INFO     | . payload execution = 7679 s
[2026-01-26 15:44:49] 2026-01-26 15:43:49,767 | INFO     | . stage-out = 0 s
[2026-01-26 15:44:49] 2026-01-26 15:43:49,767 | INFO     | . log creation = 0 s
[2026-01-26 15:44:49] 2026-01-26 15:43:49,767 | INFO     | ..............................
[2026-01-26 15:44:49] 2026-01-26 15:43:50,453 | INFO     | 
[2026-01-26 15:44:49] 2026-01-26 15:43:50,453 | INFO     | job summary report
[2026-01-26 15:44:49] 2026-01-26 15:43:50,453 | INFO     | --------------------------------------------------
[2026-01-26 15:44:49] 2026-01-26 15:43:50,453 | INFO     | PanDA job id: 6981030239
[2026-01-26 15:44:49] 2026-01-26 15:43:50,454 | INFO     | task id: 48310724
[2026-01-26 15:44:49] 2026-01-26 15:43:50,454 | INFO     | errors: (none)
[2026-01-26 15:44:49] 2026-01-26 15:43:50,454 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 15:44:49] 2026-01-26 15:43:50,454 | INFO     | pilot state: finished 
[2026-01-26 15:44:49] 2026-01-26 15:43:50,454 | INFO     | transexitcode: 0
[2026-01-26 15:44:49] 2026-01-26 15:43:50,455 | INFO     | exeerrorcode: 0
[2026-01-26 15:44:49] 2026-01-26 15:43:50,455 | INFO     | exeerrordiag: 
[2026-01-26 15:44:49] 2026-01-26 15:43:50,455 | INFO     | exitcode: 0
[2026-01-26 15:44:49] 2026-01-26 15:43:50,455 | INFO     | exitmsg: OK
[2026-01-26 15:44:49] 2026-01-26 15:43:50,455 | INFO     | cpuconsumptiontime: 31210 s
[2026-01-26 15:44:49] 2026-01-26 15:43:50,455 | INFO     | nevents: 400
[2026-01-26 15:44:49] 2026-01-26 15:43:50,456 | INFO     | neventsw: 0
[2026-01-26 15:44:49] 2026-01-26 15:43:50,456 | INFO     | pid: 894619
[2026-01-26 15:44:49] 2026-01-26 15:43:50,456 | INFO     | pgrp: 894619
[2026-01-26 15:44:49] 2026-01-26 15:43:50,456 | INFO     | corecount: 12
[2026-01-26 15:44:49] 2026-01-26 15:43:50,456 | INFO     | event service: False
[2026-01-26 15:44:49] 2026-01-26 15:43:50,457 | INFO     | sizes: {0: 2284272, 11: 2284272, 7685: 2311950, 7686: 2320994, 7687: 2321244}
[2026-01-26 15:44:49] 2026-01-26 15:43:50,457 | INFO     | --------------------------------------------------
[2026-01-26 15:44:49] 2026-01-26 15:43:50,457 | INFO     | 
[2026-01-26 15:44:49] 2026-01-26 15:43:50,457 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/0
[2026-01-26 15:44:49] 2026-01-26 15:43:50,470 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 15:44:49] 2026-01-26 15:43:50,471 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 15:44:49] 2026-01-26 15:43:50,471 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 15:44:49] 2026-01-26 15:43:50,471 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 15:44:49] 2026-01-26 15:43:50,471 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 15:44:49] 2026-01-26 15:43:50,471 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 15:44:49] 2026-01-26 15:43:50,471 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 15:44:49] 2026-01-26 15:43:50,471 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 15:44:49] 2026-01-26 15:43:50,471 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 15:44:49] 2026-01-26 15:43:50,471 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 15:44:49] 2026-01-26 15:43:50,471 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 15:44:49] 2026-01-26 15:43:50,471 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 15:44:49] 2026-01-26 15:43:50,471 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 15:44:49] 2026-01-26 15:43:50,471 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 15:44:49] 2026-01-26 15:43:50,471 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 15:44:49] 2026-01-26 15:43:50,471 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 15:44:49] 2026-01-26 15:43:50,471 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 15:44:49] 2026-01-26 15:43:50,472 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 15:44:49] 2026-01-26 15:43:50,472 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 15:44:49] 2026-01-26 15:43:50,472 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 15:44:49] 2026-01-26 15:43:50,472 | INFO     | job 6981030239 has completed (purged errors)
[2026-01-26 15:44:49] 2026-01-26 15:43:50,472 | INFO     | overall cleanup function is called
[2026-01-26 15:44:49] 2026-01-26 15:43:51,476 | INFO     | --- collectZombieJob: --- 10, [894619]
[2026-01-26 15:44:49] 2026-01-26 15:43:51,476 | INFO     | zombie collector waiting for pid 894619
[2026-01-26 15:44:49] 2026-01-26 15:43:51,476 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 15:44:49] 2026-01-26 15:43:51,476 | INFO     | collected zombie processes
[2026-01-26 15:44:49] 2026-01-26 15:43:51,476 | INFO     | will attempt to kill all subprocesses of pid=894619
[2026-01-26 15:44:49] 2026-01-26 15:43:51,520 | INFO     | process IDs to be killed: [894619] (in reverse order)
[2026-01-26 15:44:49] 2026-01-26 15:43:51,541 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 15:44:49] 2026-01-26 15:43:51,541 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 15:44:49] 2026-01-26 15:43:51,542 | INFO     | did not find any defunct processes belonging to 894619
[2026-01-26 15:44:49] 2026-01-26 15:43:51,543 | INFO     | did not find any defunct processes belonging to 894619
[2026-01-26 15:44:49] 2026-01-26 15:43:51,544 | INFO     | ready for new job
[2026-01-26 15:44:49] 2026-01-26 15:43:51,544 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 15:44:49] 2026-01-26 15:43:51,545 | INFO     | **************************************
[2026-01-26 15:44:49] 2026-01-26 15:43:51,545 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 15:44:49] 2026-01-26 15:43:51,545 | INFO     | **************************************
[2026-01-26 15:44:49] 2026-01-26 15:43:51,545 | INFO     | 
[2026-01-26 15:44:49] 2026-01-26 15:43:51,563 | INFO     | architecture information:
[2026-01-26 15:44:49] 2026-01-26 15:43:51,563 | INFO     | executing command: cat /etc/os-release
[2026-01-26 15:44:49] 2026-01-26 15:43:51,570 | INFO     | cat /etc/os-release:
[2026-01-26 15:44:49] NAME="CentOS Linux"
[2026-01-26 15:44:49] VERSION="7 (Core)"
[2026-01-26 15:44:49] ID="centos"
[2026-01-26 15:44:49] ID_LIKE="rhel fedora"
[2026-01-26 15:44:49] VERSION_ID="7"
[2026-01-26 15:44:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 15:44:49] ANSI_COLOR="0;31"
[2026-01-26 15:44:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 15:44:49] HOME_URL="https://www.centos.org/"
[2026-01-26 15:44:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 15:44:49] 
[2026-01-26 15:44:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 15:44:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 15:44:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 15:44:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 15:44:49] 
[2026-01-26 15:44:49] 2026-01-26 15:43:51,570 | INFO     | **************************************
[2026-01-26 15:44:49] 2026-01-26 15:43:52,071 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/0
[2026-01-26 15:44:49] 2026-01-26 15:43:52,079 | INFO     | sufficient remaining disk space (257941307392 B)
[2026-01-26 15:44:49] 2026-01-26 15:43:52,079 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 15:44:49] 2026-01-26 15:43:52,079 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 15:44:49] 2026-01-26 15:43:52,079 | INFO     | update_server=False
[2026-01-26 15:44:49] 2026-01-26 15:43:52,079 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 15:44:49] 2026-01-26 15:43:52,079 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 15:44:49] 2026-01-26 15:43:52,237 | INFO     | job.realtimelogging is not enabled
[2026-01-26 15:44:49] 2026-01-26 15:43:52,423 | INFO     | all payload control threads have been joined
[2026-01-26 15:44:49] 2026-01-26 15:43:52,430 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 15:44:49] 2026-01-26 15:43:52,430 | INFO     | aborting loop
[2026-01-26 15:44:49] 2026-01-26 15:43:52,604 | INFO     | all data control threads have been joined
[2026-01-26 15:44:49] 2026-01-26 15:43:53,084 | INFO     | [job] retrieve thread has finished
[2026-01-26 15:44:49] 2026-01-26 15:43:53,239 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 15:44:49] 2026-01-26 15:43:53,368 | INFO     | [payload] validate_post thread has finished
[2026-01-26 15:44:49] 2026-01-26 15:43:53,428 | INFO     | [payload] control thread has finished
[2026-01-26 15:44:49] 2026-01-26 15:43:53,435 | INFO     | [job] job monitor thread has finished
[2026-01-26 15:44:49] 2026-01-26 15:43:53,483 | INFO     | all job control threads have been joined
[2026-01-26 15:44:49] 2026-01-26 15:43:53,610 | INFO     | [data] control thread has finished
[2026-01-26 15:44:49] 2026-01-26 15:43:53,691 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 15:44:49] 2026-01-26 15:43:53,759 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 15:44:49] 2026-01-26 15:43:53,875 | INFO     | [job] validate thread has finished
[2026-01-26 15:44:49] 2026-01-26 15:43:54,084 | INFO     | [data] copytool_out thread has finished
[2026-01-26 15:44:49] 2026-01-26 15:43:54,243 | INFO     | [data] copytool_in thread has finished
[2026-01-26 15:44:49] 2026-01-26 15:43:54,411 | INFO     | [payload] failed_post thread has finished
[2026-01-26 15:44:49] 2026-01-26 15:43:54,487 | INFO     | [job] control thread has finished
[2026-01-26 15:44:49] 2026-01-26 15:43:54,530 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 15:44:49] 2026-01-26 15:43:55,079 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 15:44:49] 2026-01-26 15:43:55,412 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 15:44:49] 2026-01-26 15:43:56,083 | INFO     | [job] queue monitor thread has finished
[2026-01-26 15:44:49] 2026-01-26 15:43:59,418 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 15:44:49] 2026-01-26 15:44:21,760 | INFO     | PID=890185 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-26 15:44:49] 2026-01-26 15:44:21,760 | INFO     | .. there are 2 such processes running
[2026-01-26 15:44:49] 2026-01-26 15:44:21,761 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 15:44:49] 2026-01-26 15:44:21,761 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 15:44:49] 2026-01-26 15:44:21,761 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 15:44:49] 2026-01-26 15:44:44,028 | INFO     | [monitor] cgroup control has ended
[2026-01-26 15:44:49] 2026-01-26 15:44:44,183 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140347052750656)>', '<ExcThread(monitor, started 140346595972864)>']
[2026-01-26 15:44:49] 2026-01-26 15:44:44,861 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 15:44:49] 2026-01-26 15:44:44,861 | INFO     | [monitor] control thread has ended
[2026-01-26 15:44:49] 2026-01-26 15:44:49,207 | INFO     | all workflow threads have been joined
[2026-01-26 15:44:49] 2026-01-26 15:44:49,207 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 15:44:49] 2026-01-26 15:44:49,207 | INFO     | traces error code: 0
[2026-01-26 15:44:49] 2026-01-26 15:44:49,207 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 15:44:49] 2026-01-26 15:44:49,261 [wrapper] ==== pilot stdout END ====
[2026-01-26 15:44:49] 2026-01-26 15:44:49,262 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 15:44:49] 2026-01-26 15:44:49,263 [wrapper] pilotpid: 890185
[2026-01-26 15:44:49] 2026-01-26 15:44:49,264 [wrapper] Pilot exit status: 0
[2026-01-26 15:44:49] 2026-01-26 15:44:49,270 [wrapper] pandaids: 6981030239
[2026-01-26 15:44:49] 2026-01-26 15:44:49,280 [wrapper] cleanup supervisor_pilot  900094 890186
[2026-01-26 15:44:49] 2026-01-26 15:44:49,281 [wrapper] Test setup, not cleaning
[2026-01-26 15:44:49] 2026-01-26 15:44:49,282 [wrapper] apfmon messages muted
[2026-01-26 15:44:49] 2026-01-26 15:44:49,283 [wrapper] ==== wrapper stdout END ====
[2026-01-26 15:44:49] 2026-01-26 15:44:49,284 [wrapper] ==== wrapper stderr END ====
[2026-01-26 15:44:49]  *** Error codes and diagnostics ***
[2026-01-26 15:44:49]     "exeErrorCode": 0,
[2026-01-26 15:44:49]     "exeErrorDiag": "",
[2026-01-26 15:44:49]     "pilotErrorCode": 0,
[2026-01-26 15:44:49]     "pilotErrorDiag": "",
[2026-01-26 15:44:49]  *** Listing of results directory ***
[2026-01-26 15:44:49] total 673380
[2026-01-26 15:44:49] -rw-r--r-- 1 boinc boinc    584422 Jan 24 09:17 pilot3.tar.gz
[2026-01-26 15:44:49] -rwx------ 1 boinc boinc     36322 Jan 24 09:18 runpilot2-wrapper.sh
[2026-01-26 15:44:49] -rw-r--r-- 1 boinc boinc      5111 Jan 24 09:19 queuedata.json
[2026-01-26 15:44:49] -rw-rw-r-- 1 boinc boinc       100 Jan 26 13:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 15:44:49] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 13:34 run_atlas
[2026-01-26 15:44:49] -rw-rw-r-- 1 boinc boinc       105 Jan 26 13:34 job.xml
[2026-01-26 15:44:49] -rw-r--r-- 2 boinc boinc 491978111 Jan 26 13:35 EVNT.48310721._000048.pool.root.1
[2026-01-26 15:44:49] drwxrwx--x 2 boinc boinc      4096 Jan 26 13:35 shared
[2026-01-26 15:44:49] -rw-r--r-- 2 boinc boinc    597763 Jan 26 13:35 input.tar.gz
[2026-01-26 15:44:49] -rw-r--r-- 2 boinc boinc     15845 Jan 26 13:35 start_atlas.sh
[2026-01-26 15:44:49] -rw-rw-r-- 1 boinc boinc      8907 Jan 26 13:35 init_data.xml
[2026-01-26 15:44:49] -rw-rw-r-- 1 boinc boinc         0 Jan 26 13:35 boinc_setup_complete
[2026-01-26 15:44:49] -rw-rw-r-- 1 boinc boinc         0 Jan 26 13:35 boinc_lockfile
[2026-01-26 15:44:49] -rw-rw-r-- 1 boinc boinc      2532 Jan 26 13:35 pandaJob.out
[2026-01-26 15:44:49] -rw------- 1 boinc boinc   1002197 Jan 26 13:35 agis_schedconf.cvmfs.json
[2026-01-26 15:44:49] -rw------- 1 boinc boinc   1516246 Jan 26 13:35 agis_ddmendpoints.agis.ALL.json
[2026-01-26 15:44:49] -rw------- 1 boinc boinc       421 Jan 26 13:35 workernode_map.json
[2026-01-26 15:44:49] drwx------ 5 boinc boinc      4096 Jan 26 13:35 pilot3
[2026-01-26 15:44:49] -rw------- 1 boinc boinc 190462910 Jan 26 15:43 HITS.48310724._002370.pool.root.1
[2026-01-26 15:44:49] -rw------- 1 boinc boinc      1034 Jan 26 15:43 memory_monitor_summary.json
[2026-01-26 15:44:49] -rw------- 1 boinc boinc    440094 Jan 26 15:43 log.48310724._002370.job.log.tgz.1
[2026-01-26 15:44:49] -rw------- 1 boinc boinc      6340 Jan 26 15:43 heartbeat.json
[2026-01-26 15:44:49] -rw-rw-r-- 1 boinc boinc       530 Jan 26 15:43 boinc_task_state.xml
[2026-01-26 15:44:49] -rw------- 1 boinc boinc        95 Jan 26 15:44 pilot_heartbeat.json
[2026-01-26 15:44:49] -rw-rw-r-- 1 boinc boinc      8192 Jan 26 15:44 boinc_mmap_file
[2026-01-26 15:44:49] -rw-rw-r-- 1 boinc boinc        27 Jan 26 15:44 wrapper_checkpoint.txt
[2026-01-26 15:44:49] -rw------- 1 boinc boinc      4914 Jan 26 15:44 pilotlog.txt
[2026-01-26 15:44:49] -rw------- 1 boinc boinc   1139713 Jan 26 15:44 log.48310724._002370.job.log.1
[2026-01-26 15:44:49] -rw------- 1 boinc boinc       357 Jan 26 15:44 output.list
[2026-01-26 15:44:49] -rw-rw-r-- 1 boinc boinc       620 Jan 26 15:44 runtime_log
[2026-01-26 15:44:49] -rw------- 1 boinc boinc   1597440 Jan 26 15:44 result.tar.gz
[2026-01-26 15:44:49] -rw-rw-r-- 1 boinc boinc      9189 Jan 26 15:44 runtime_log.err
[2026-01-26 15:44:49] -rw------- 1 boinc boinc       660 Jan 26 15:44 GJ6MDm7xo38nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsr4KDmkBF2Im.diag
[2026-01-26 15:44:49] -rw-rw-r-- 1 boinc boinc     20786 Jan 26 15:44 stderr.txt
[2026-01-26 15:44:49] HITS file was successfully produced:
[2026-01-26 15:44:49] -rw------- 1 boinc boinc 190462910 Jan 26 15:43 shared/HITS.pool.root.1
[2026-01-26 15:44:49]  *** Contents of shared directory: ***
[2026-01-26 15:44:49] total 668616
[2026-01-26 15:44:49] -rw-r--r-- 2 boinc boinc 491978111 Jan 26 13:35 ATLAS.root_0
[2026-01-26 15:44:49] -rw-r--r-- 2 boinc boinc    597763 Jan 26 13:35 input.tar.gz
[2026-01-26 15:44:49] -rw-r--r-- 2 boinc boinc     15845 Jan 26 13:35 start_atlas.sh
[2026-01-26 15:44:49] -rw------- 1 boinc boinc 190462910 Jan 26 15:43 HITS.pool.root.1
[2026-01-26 15:44:49] -rw------- 1 boinc boinc   1597440 Jan 26 15:44 result.tar.gz
15:44:51 (886465): run_atlas exited; CPU time 31222.812817
15:44:51 (886465): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN