Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:45:52 (19790): wrapper (7.7.26015): starting
02:45:52 (19790): wrapper: running run_atlas (--nthreads 8)
[2026-01-25 02:45:52] Arguments: --nthreads 8
[2026-01-25 02:45:52] Threads: 8
[2026-01-25 02:45:52] Checking for CVMFS
[2026-01-25 02:45:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-25 02:45:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-25 02:45:55] Running cvmfs_config stat atlas.cern.ch
[2026-01-25 02:45:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-25 02:45:56] 2.11.2.0 32117 57813 130680 155491 1 54 18642019 25165824 1060 130560 0 22507426 99.828 14882409 3088 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-25 02:45:56] CVMFS is ok
[2026-01-25 02:45:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-25 02:45:56] Checking for apptainer binary...
[2026-01-25 02:45:56] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-25 02:45:56] Running /usr/bin/apptainer --version
[2026-01-25 02:45:56] apptainer version 1.3.2-1.el7
[2026-01-25 02:45:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-25 02:46:14] cg-vwn477.simple-grid.lan
[2026-01-25 02:46:14] apptainer works
[2026-01-25 02:46:14] Set ATHENA_PROC_NUMBER=8
[2026-01-25 02:46:14] Set ATHENA_CORE_NUMBER=8
[2026-01-25 02:46:14] Starting ATLAS job with PandaID=6980916278
[2026-01-25 02:46:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-25 06:44:20]  *** The last 200 lines of the pilot log: ***
[2026-01-25 06:44:20] 2026-01-25 05:43:28,562 | INFO     | total number of processed events: 400 (read)
[2026-01-25 06:44:20] 2026-01-25 05:43:28,564 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6980916278/memory_monitor_summary.json (trf name=prmon)
[2026-01-25 06:44:20] 2026-01-25 05:43:28,564 | INFO     | extracted standard info from prmon json
[2026-01-25 06:44:20] 2026-01-25 05:43:28,565 | INFO     | extracted standard memory fields from prmon json
[2026-01-25 06:44:20] 2026-01-25 05:43:28,565 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-25 06:44:20] 2026-01-25 05:43:28,565 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-25 06:44:20] 2026-01-25 05:43:28,565 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-25 06:44:20] 2026-01-25 05:43:28,570 | INFO     | fitting pss+swap vs Time
[2026-01-25 06:44:20] 2026-01-25 05:43:28,570 | INFO     | sum of square deviations: 3438620752.0
[2026-01-25 06:44:20] 2026-01-25 05:43:28,572 | INFO     | sum of deviations: 98640756928.99998
[2026-01-25 06:44:20] 2026-01-25 05:43:28,572 | INFO     | mean x: 1769313025.0
[2026-01-25 06:44:20] 2026-01-25 05:43:28,572 | INFO     | mean y: 2406175.013452915
[2026-01-25 06:44:20] 2026-01-25 05:43:28,572 | INFO     | intersect: -50752355288.23577
[2026-01-25 06:44:20] 2026-01-25 05:43:28,573 | INFO     | chi2: 8.255972761884454
[2026-01-25 06:44:20] 2026-01-25 05:43:28,573 | INFO     | sum of square deviations: 3212467674.5
[2026-01-25 06:44:20] 2026-01-25 05:43:28,575 | INFO     | sum of deviations: 126345250880.99997
[2026-01-25 06:44:20] 2026-01-25 05:43:28,575 | INFO     | mean x: 1769312872.5
[2026-01-25 06:44:20] 2026-01-25 05:43:28,575 | INFO     | mean y: 2424578.5779816513
[2026-01-25 06:44:20] 2026-01-25 05:43:28,575 | INFO     | intersect: -69584043337.48857
[2026-01-25 06:44:20] 2026-01-25 05:43:28,576 | INFO     | chi2: 6.702768952981946
[2026-01-25 06:44:20] 2026-01-25 05:43:28,576 | INFO     | current chi2=6.702768952981946 (change=18.81309269906051 %)
[2026-01-25 06:44:20] 2026-01-25 05:43:28,576 | INFO     | right removable region: 217
[2026-01-25 06:44:20] 2026-01-25 05:43:28,577 | INFO     | sum of square deviations: 3212467674.5
[2026-01-25 06:44:20] 2026-01-25 05:43:28,582 | INFO     | sum of deviations: 24067097807.0
[2026-01-25 06:44:20] 2026-01-25 05:43:28,583 | INFO     | mean x: 1769313177.5
[2026-01-25 06:44:20] 2026-01-25 05:43:28,583 | INFO     | mean y: 2456416.6788990824
[2026-01-25 06:44:20] 2026-01-25 05:43:28,583 | INFO     | intersect: -13252846860.647963
[2026-01-25 06:44:20] 2026-01-25 05:43:28,583 | INFO     | chi2: 3.6368148498664516
[2026-01-25 06:44:20] 2026-01-25 05:43:28,583 | INFO     | current chi2=3.6368148498664516 (change=55.94928720384566 %)
[2026-01-25 06:44:20] 2026-01-25 05:43:28,584 | INFO     | sum of square deviations: 2996454322.0
[2026-01-25 06:44:20] 2026-01-25 05:43:28,585 | INFO     | sum of deviations: -22431134293.0
[2026-01-25 06:44:20] 2026-01-25 05:43:28,585 | INFO     | mean x: 1769313330.0
[2026-01-25 06:44:20] 2026-01-25 05:43:28,586 | INFO     | mean y: 2489096.7981220656
[2026-01-25 06:44:20] 2026-01-25 05:43:28,586 | INFO     | intersect: 13247378104.528849
[2026-01-25 06:44:20] 2026-01-25 05:43:28,586 | INFO     | chi2: 1.7767201506723567
[2026-01-25 06:44:20] 2026-01-25 05:43:28,586 | INFO     | current chi2=1.7767201506723567 (change=51.14625781024844 %)
[2026-01-25 06:44:20] 2026-01-25 05:43:28,586 | INFO     | sum of square deviations: 2790348132.0
[2026-01-25 06:44:20] 2026-01-25 05:43:28,588 | INFO     | sum of deviations: -22702331356.5
[2026-01-25 06:44:20] 2026-01-25 05:43:28,588 | INFO     | mean x: 1769313482.5
[2026-01-25 06:44:20] 2026-01-25 05:43:28,588 | INFO     | mean y: 2489237.706730769
[2026-01-25 06:44:20] 2026-01-25 05:43:28,588 | INFO     | intersect: 14397661113.428066
[2026-01-25 06:44:20] 2026-01-25 05:43:28,589 | INFO     | chi2: 1.7480051298468249
[2026-01-25 06:44:20] 2026-01-25 05:43:28,589 | INFO     | current chi2=1.7480051298468249 (change=1.6161814123999936 %)
[2026-01-25 06:44:20] 2026-01-25 05:43:28,589 | INFO     | left removable region: 30
[2026-01-25 06:44:20] 2026-01-25 05:43:28,589 | INFO     | sum of square deviations: 2027639878.0
[2026-01-25 06:44:20] 2026-01-25 05:43:28,591 | INFO     | sum of deviations: 6481449713.999999
[2026-01-25 06:44:20] 2026-01-25 05:43:28,591 | INFO     | mean x: 1769313757.0
[2026-01-25 06:44:20] 2026-01-25 05:43:28,591 | INFO     | mean y: 2510561.245989305
[2026-01-25 06:44:20] 2026-01-25 05:43:28,591 | INFO     | intersect: -5653187114.021332
[2026-01-25 06:44:20] 2026-01-25 05:43:28,591 | INFO     | chi2: 0.0005950827147705191
[2026-01-25 06:44:20] 2026-01-25 05:43:28,592 | INFO     | current memory leak: 3.20 B/s (using 187 data points, chi2=0.00)
[2026-01-25 06:44:20] 2026-01-25 05:43:28,597 | INFO     | could have reported an average CPU frequency of 2249 MHz (11 samples)
[2026-01-25 06:44:20] 2026-01-25 05:43:28,597 | INFO     | ..............................
[2026-01-25 06:44:20] 2026-01-25 05:43:28,598 | INFO     | . Timing measurements:
[2026-01-25 06:44:20] 2026-01-25 05:43:28,598 | INFO     | . get job = 0 s
[2026-01-25 06:44:20] 2026-01-25 05:43:28,598 | INFO     | . initial setup = 125 s
[2026-01-25 06:44:20] 2026-01-25 05:43:28,598 | INFO     | . payload setup = 148 s
[2026-01-25 06:44:20] 2026-01-25 05:43:28,598 | INFO     | . stage-in = 0 s
[2026-01-25 06:44:20] 2026-01-25 05:43:28,598 | INFO     | . payload execution = 13670 s
[2026-01-25 06:44:20] 2026-01-25 05:43:28,598 | INFO     | . stage-out = 4 s
[2026-01-25 06:44:20] 2026-01-25 05:43:28,598 | INFO     | . log creation = 1 s
[2026-01-25 06:44:20] 2026-01-25 05:43:28,598 | INFO     | ..............................
[2026-01-25 06:44:20] 2026-01-25 05:43:28,730 | INFO     | 
[2026-01-25 06:44:20] 2026-01-25 05:43:28,730 | INFO     | job summary report
[2026-01-25 06:44:20] 2026-01-25 05:43:28,730 | INFO     | --------------------------------------------------
[2026-01-25 06:44:20] 2026-01-25 05:43:28,730 | INFO     | PanDA job id: 6980916278
[2026-01-25 06:44:20] 2026-01-25 05:43:28,730 | INFO     | task id: 48298489
[2026-01-25 06:44:20] 2026-01-25 05:43:28,730 | INFO     | errors: (none)
[2026-01-25 06:44:20] 2026-01-25 05:43:28,730 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-25 06:44:20] 2026-01-25 05:43:28,731 | INFO     | pilot state: finished 
[2026-01-25 06:44:20] 2026-01-25 05:43:28,731 | INFO     | transexitcode: 0
[2026-01-25 06:44:20] 2026-01-25 05:43:28,731 | INFO     | exeerrorcode: 0
[2026-01-25 06:44:20] 2026-01-25 05:43:28,731 | INFO     | exeerrordiag: 
[2026-01-25 06:44:20] 2026-01-25 05:43:28,731 | INFO     | exitcode: 0
[2026-01-25 06:44:20] 2026-01-25 05:43:28,731 | INFO     | exitmsg: OK
[2026-01-25 06:44:20] 2026-01-25 05:43:28,731 | INFO     | cpuconsumptiontime: 51377 s
[2026-01-25 06:44:20] 2026-01-25 05:43:28,731 | INFO     | nevents: 400
[2026-01-25 06:44:20] 2026-01-25 05:43:28,731 | INFO     | neventsw: 0
[2026-01-25 06:44:20] 2026-01-25 05:43:28,731 | INFO     | pid: 28198
[2026-01-25 06:44:20] 2026-01-25 05:43:28,731 | INFO     | pgrp: 28198
[2026-01-25 06:44:20] 2026-01-25 05:43:28,731 | INFO     | corecount: 8
[2026-01-25 06:44:20] 2026-01-25 05:43:28,731 | INFO     | event service: False
[2026-01-25 06:44:20] 2026-01-25 05:43:28,732 | INFO     | sizes: {0: 2283831, 1: 2284288, 2: 2284348, 12: 2284376, 13823: 2314728, 13828: 2323726, 13830: 2324104}
[2026-01-25 06:44:20] 2026-01-25 05:43:28,732 | INFO     | --------------------------------------------------
[2026-01-25 06:44:20] 2026-01-25 05:43:28,732 | INFO     | 
[2026-01-25 06:44:20] 2026-01-25 05:43:28,732 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-01-25 06:44:20] 2026-01-25 05:43:29,301 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-25 06:44:20] 2026-01-25 05:43:29,301 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-25 06:44:20] 2026-01-25 05:43:29,301 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-25 06:44:20] 2026-01-25 05:43:29,301 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-25 06:44:20] 2026-01-25 05:43:29,301 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-25 06:44:20] 2026-01-25 05:43:29,301 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-25 06:44:20] 2026-01-25 05:43:29,302 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-25 06:44:20] 2026-01-25 05:43:29,302 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-25 06:44:20] 2026-01-25 05:43:29,302 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-25 06:44:20] 2026-01-25 05:43:29,302 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-25 06:44:20] 2026-01-25 05:43:29,302 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-25 06:44:20] 2026-01-25 05:43:29,302 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-25 06:44:20] 2026-01-25 05:43:29,302 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-25 06:44:20] 2026-01-25 05:43:29,302 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-25 06:44:20] 2026-01-25 05:43:29,303 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-25 06:44:20] 2026-01-25 05:43:29,303 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-25 06:44:20] 2026-01-25 05:43:29,303 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-25 06:44:20] 2026-01-25 05:43:29,303 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-25 06:44:20] 2026-01-25 05:43:29,303 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-25 06:44:20] 2026-01-25 05:43:29,303 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-25 06:44:20] 2026-01-25 05:43:29,303 | INFO     | job 6980916278 has completed (purged errors)
[2026-01-25 06:44:20] 2026-01-25 05:43:29,303 | INFO     | overall cleanup function is called
[2026-01-25 06:44:20] 2026-01-25 05:43:30,312 | INFO     | --- collectZombieJob: --- 10, [28198]
[2026-01-25 06:44:20] 2026-01-25 05:43:30,312 | INFO     | zombie collector waiting for pid 28198
[2026-01-25 06:44:20] 2026-01-25 05:43:30,312 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-25 06:44:20] 2026-01-25 05:43:30,313 | INFO     | collected zombie processes
[2026-01-25 06:44:20] 2026-01-25 05:43:30,313 | INFO     | will attempt to kill all subprocesses of pid=28198
[2026-01-25 06:44:20] 2026-01-25 05:43:30,397 | INFO     | process IDs to be killed: [28198] (in reverse order)
[2026-01-25 06:44:20] 2026-01-25 05:43:31,306 | WARNING  | found no corresponding commands to process id(s)
[2026-01-25 06:44:20] 2026-01-25 05:43:31,306 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-25 06:44:20] 2026-01-25 05:43:31,308 | INFO     | did not find any defunct processes belonging to 28198
[2026-01-25 06:44:20] 2026-01-25 05:43:31,310 | INFO     | did not find any defunct processes belonging to 28198
[2026-01-25 06:44:20] 2026-01-25 05:43:31,310 | INFO     | ready for new job
[2026-01-25 06:44:20] 2026-01-25 05:43:31,310 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-25 06:44:20] 2026-01-25 05:43:31,312 | INFO     | **************************************
[2026-01-25 06:44:20] 2026-01-25 05:43:31,312 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-25 06:44:20] 2026-01-25 05:43:31,312 | INFO     | **************************************
[2026-01-25 06:44:20] 2026-01-25 05:43:31,312 | INFO     | 
[2026-01-25 06:44:20] 2026-01-25 05:43:31,313 | INFO     | pilot is running in a VM
[2026-01-25 06:44:20] 2026-01-25 05:43:31,313 | INFO     | architecture information:
[2026-01-25 06:44:20] 2026-01-25 05:43:31,320 | INFO     | executing command: cat /etc/os-release
[2026-01-25 06:44:20] 2026-01-25 05:43:31,582 | INFO     | cat /etc/os-release:
[2026-01-25 06:44:20] NAME="CentOS Linux"
[2026-01-25 06:44:20] VERSION="7 (Core)"
[2026-01-25 06:44:20] ID="centos"
[2026-01-25 06:44:20] ID_LIKE="rhel fedora"
[2026-01-25 06:44:20] VERSION_ID="7"
[2026-01-25 06:44:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-25 06:44:20] ANSI_COLOR="0;31"
[2026-01-25 06:44:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-25 06:44:20] HOME_URL="https://www.centos.org/"
[2026-01-25 06:44:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-25 06:44:20] 
[2026-01-25 06:44:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-25 06:44:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-25 06:44:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-25 06:44:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-25 06:44:20] 
[2026-01-25 06:44:20] 2026-01-25 05:43:31,583 | INFO     | **************************************
[2026-01-25 06:44:20] 2026-01-25 05:43:32,086 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-01-25 06:44:20] 2026-01-25 05:43:32,268 | INFO     | sufficient remaining disk space (494534656000 B)
[2026-01-25 06:44:20] 2026-01-25 05:43:32,268 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-25 06:44:20] 2026-01-25 05:43:32,268 | INFO     | current server update state: UPDATING_FINAL
[2026-01-25 06:44:20] 2026-01-25 05:43:32,268 | INFO     | update_server=False
[2026-01-25 06:44:20] 2026-01-25 05:43:32,269 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-25 06:44:20] 2026-01-25 05:43:32,270 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-25 06:44:20] 2026-01-25 05:43:32,402 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-25 06:44:20] 2026-01-25 05:43:32,402 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-25 06:44:20] 2026-01-25 05:43:32,402 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-25 06:44:20] 2026-01-25 05:43:32,403 | INFO     | will abort loop
[2026-01-25 06:44:20] 2026-01-25 05:43:32,783 | INFO     | all data control threads have been joined
[2026-01-25 06:44:20] 2026-01-25 05:43:33,056 | INFO     | all payload control threads have been joined
[2026-01-25 06:44:20] 2026-01-25 05:43:33,274 | INFO     | [job] retrieve thread has finished
[2026-01-25 06:44:20] 2026-01-25 05:43:33,287 | INFO     | [payload] execute_payloads thread has finished
[2026-01-25 06:44:20] 2026-01-25 05:43:33,408 | INFO     | [job] job monitor thread has finished
[2026-01-25 06:44:20] 2026-01-25 05:43:33,534 | INFO     | [data] copytool_in thread has finished
[2026-01-25 06:44:20] 2026-01-25 05:43:33,607 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-25 06:44:20] 2026-01-25 05:43:33,753 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-25 06:44:20] 2026-01-25 05:43:33,789 | INFO     | [data] control thread has finished
[2026-01-25 06:44:20] 2026-01-25 05:43:33,985 | INFO     | all job control threads have been joined
[2026-01-25 06:44:20] 2026-01-25 05:43:34,017 | INFO     | [payload] validate_pre thread has finished
[2026-01-25 06:44:20] 2026-01-25 05:43:34,062 | INFO     | [payload] control thread has finished
[2026-01-25 06:44:20] 2026-01-25 05:43:34,074 | INFO     | [job] validate thread has finished
[2026-01-25 06:44:20] 2026-01-25 05:43:34,120 | INFO     | [payload] validate_post thread has finished
[2026-01-25 06:44:20] 2026-01-25 05:43:34,133 | INFO     | [job] create_data_payload thread has finished
[2026-01-25 06:44:20] 2026-01-25 05:43:34,277 | INFO     | [data] copytool_out thread has finished
[2026-01-25 06:44:20] 2026-01-25 05:43:34,542 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-25 06:44:20] 2026-01-25 05:43:34,759 | INFO     | [job] queue monitor thread has finished
[2026-01-25 06:44:20] 2026-01-25 05:43:34,870 | INFO     | [payload] failed_post thread has finished
[2026-01-25 06:44:20] 2026-01-25 05:43:34,991 | INFO     | [job] control thread has finished
[2026-01-25 06:44:20] 2026-01-25 05:43:38,551 | INFO     | [data] queue_monitor thread has finished
[2026-01-25 06:44:20] 2026-01-25 05:44:01,423 | INFO     | PID=23765 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-25 06:44:20] 2026-01-25 05:44:01,423 | INFO     | .. there are 2 such processes running
[2026-01-25 06:44:20] 2026-01-25 05:44:01,423 | INFO     | found 0 job(s) in 20 queues
[2026-01-25 06:44:20] 2026-01-25 05:44:01,423 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-25 06:44:20] 2026-01-25 05:44:01,423 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-25 06:44:20] 2026-01-25 05:44:09,311 | INFO     | [monitor] cgroup control has ended
[2026-01-25 06:44:20] 2026-01-25 05:44:09,867 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140039663449920)>', '<ExcThread(monitor, started 140039061227264)>']
[2026-01-25 06:44:20] 2026-01-25 05:44:10,478 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-25 06:44:20] 2026-01-25 05:44:10,478 | INFO     | [monitor] control thread has ended
[2026-01-25 06:44:20] 2026-01-25 05:44:14,893 | INFO     | all workflow threads have been joined
[2026-01-25 06:44:20] 2026-01-25 05:44:14,893 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-25 06:44:20] 2026-01-25 05:44:14,894 | INFO     | traces error code: 0
[2026-01-25 06:44:20] 2026-01-25 05:44:14,894 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-25 06:44:20] 2026-01-25 05:44:15,419 [wrapper] ==== pilot stdout END ====
[2026-01-25 06:44:20] 2026-01-25 05:44:15,551 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-25 06:44:20] 2026-01-25 05:44:15,718 [wrapper] pilotpid: 23765
[2026-01-25 06:44:20] 2026-01-25 05:44:15,871 [wrapper] Pilot exit status: 0
[2026-01-25 06:44:20] 2026-01-25 05:44:16,622 [wrapper] pandaids: 6980916278
[2026-01-25 06:44:20] 2026-01-25 05:44:17,404 [wrapper] cleanup supervisor_pilot  1615 23766
[2026-01-25 06:44:20] 2026-01-25 05:44:17,467 [wrapper] Test setup, not cleaning
[2026-01-25 06:44:20] 2026-01-25 05:44:17,558 [wrapper] apfmon messages muted
[2026-01-25 06:44:20] 2026-01-25 05:44:17,660 [wrapper] ==== wrapper stdout END ====
[2026-01-25 06:44:20] 2026-01-25 05:44:17,796 [wrapper] ==== wrapper stderr END ====
[2026-01-25 06:44:20]  *** Error codes and diagnostics ***
[2026-01-25 06:44:20]     "exeErrorCode": 0,
[2026-01-25 06:44:20]     "exeErrorDiag": "",
[2026-01-25 06:44:20]     "pilotErrorCode": 0,
[2026-01-25 06:44:20]     "pilotErrorDiag": "",
[2026-01-25 06:44:20]  *** Listing of results directory ***
[2026-01-25 06:44:20] total 431520
[2026-01-25 06:44:20] -rw-r--r--. 1 boinc boinc      5111 Jan 24 10:17 queuedata.json
[2026-01-25 06:44:20] -rw-r--r--. 1 boinc boinc    584422 Jan 24 10:17 pilot3.tar.gz
[2026-01-25 06:44:20] -rwx------. 1 boinc boinc     36322 Jan 24 10:17 runpilot2-wrapper.sh
[2026-01-25 06:44:20] -rw-r--r--. 1 boinc boinc       100 Jan 25 02:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-25 06:44:20] -rwxr-xr-x. 1 boinc boinc      7986 Jan 25 02:45 run_atlas
[2026-01-25 06:44:20] -rw-r--r--. 1 boinc boinc       105 Jan 25 02:45 job.xml
[2026-01-25 06:44:20] -rw-r--r--. 1 boinc boinc      6391 Jan 25 02:45 init_data.xml
[2026-01-25 06:44:20] -rw-r--r--. 2 boinc boinc 263406404 Jan 25 02:45 EVNT.48298487._000033.pool.root.1
[2026-01-25 06:44:20] -rw-r--r--. 2 boinc boinc     15845 Jan 25 02:45 start_atlas.sh
[2026-01-25 06:44:20] drwxrwx--x. 2 boinc boinc        68 Jan 25 02:45 shared
[2026-01-25 06:44:20] -rw-r--r--. 2 boinc boinc    597769 Jan 25 02:45 input.tar.gz
[2026-01-25 06:44:20] -rw-r--r--. 1 boinc boinc         0 Jan 25 02:45 boinc_lockfile
[2026-01-25 06:44:20] -rw-r--r--. 1 boinc boinc      2616 Jan 25 02:46 pandaJob.out
[2026-01-25 06:44:20] -rw-------. 1 boinc boinc       415 Jan 25 02:52 workernode_map.json
[2026-01-25 06:44:20] -rw-------. 1 boinc boinc   1004254 Jan 25 02:52 agis_schedconf.cvmfs.json
[2026-01-25 06:44:20] drwx------. 5 boinc boinc      4096 Jan 25 02:52 pilot3
[2026-01-25 06:44:20] -rw-------. 1 boinc boinc 169753211 Jan 25 06:42 HITS.48298489._000821.pool.root.1
[2026-01-25 06:44:20] -rw-r--r--. 1 boinc boinc       531 Jan 25 06:42 boinc_task_state.xml
[2026-01-25 06:44:20] -rw-------. 1 boinc boinc      1011 Jan 25 06:43 memory_monitor_summary.json
[2026-01-25 06:44:20] -rw-------. 1 boinc boinc   1516246 Jan 25 06:43 agis_ddmendpoints.agis.ALL.json
[2026-01-25 06:44:20] -rw-------. 1 boinc boinc        95 Jan 25 06:43 pilot_heartbeat.json
[2026-01-25 06:44:20] -rw-------. 1 boinc boinc    442281 Jan 25 06:43 log.48298489._000821.job.log.tgz.1
[2026-01-25 06:44:20] -rw-------. 1 boinc boinc      6309 Jan 25 06:43 heartbeat.json
[2026-01-25 06:44:20] -rw-r--r--. 1 boinc boinc        28 Jan 25 06:44 wrapper_checkpoint.txt
[2026-01-25 06:44:20] -rw-r--r--. 1 boinc boinc      8192 Jan 25 06:44 boinc_mmap_file
[2026-01-25 06:44:20] -rw-------. 1 boinc boinc      5066 Jan 25 06:44 pilotlog.txt
[2026-01-25 06:44:20] -rw-------. 1 boinc boinc   1953056 Jan 25 06:44 log.48298489._000821.job.log.1
[2026-01-25 06:44:20] -rw-------. 1 boinc boinc       357 Jan 25 06:44 output.list
[2026-01-25 06:44:20] -rw-r--r--. 1 boinc boinc       620 Jan 25 06:44 runtime_log
[2026-01-25 06:44:20] -rw-------. 1 boinc boinc   2416640 Jan 25 06:44 result.tar.gz
[2026-01-25 06:44:20] -rw-r--r--. 1 boinc boinc      8816 Jan 25 06:44 runtime_log.err
[2026-01-25 06:44:20] -rw-------. 1 boinc boinc       655 Jan 25 06:44 5xmNDmowo38nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDn4KDmjTrDbn.diag
[2026-01-25 06:44:20] -rw-r--r--. 1 boinc boinc     20705 Jan 25 06:44 stderr.txt
[2026-01-25 06:44:20] HITS file was successfully produced:
[2026-01-25 06:44:20] -rw-------. 1 boinc boinc 169753211 Jan 25 06:42 shared/HITS.pool.root.1
[2026-01-25 06:44:20]  *** Contents of shared directory: ***
[2026-01-25 06:44:20] total 425972
[2026-01-25 06:44:20] -rw-r--r--. 2 boinc boinc 263406404 Jan 25 02:45 ATLAS.root_0
[2026-01-25 06:44:20] -rw-r--r--. 2 boinc boinc     15845 Jan 25 02:45 start_atlas.sh
[2026-01-25 06:44:20] -rw-r--r--. 2 boinc boinc    597769 Jan 25 02:45 input.tar.gz
[2026-01-25 06:44:20] -rw-------. 1 boinc boinc 169753211 Jan 25 06:42 HITS.pool.root.1
[2026-01-25 06:44:20] -rw-------. 1 boinc boinc   2416640 Jan 25 06:44 result.tar.gz
06:44:22 (19790): run_atlas exited; CPU time 51520.416030
06:44:22 (19790): called boinc_finish(0)

</stderr_txt>
]]>

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